Wall clock time and date at job start Fri Apr 10 2020 18:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00032 * 2 1 4 4 H 1.48499 * 109.46813 * 240.00117 * 3 2 1 5 5 H 1.48502 * 109.46742 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47311 * 119.99731 * 3 2 1 7 7 C 1.38806 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00567 * 176.02253 * 7 2 1 9 9 N 1.36945 * 119.99730 * 356.02178 * 7 2 1 10 10 C 1.46962 * 120.59046 * 215.68506 * 9 7 2 11 11 C 1.53372 * 108.63627 * 235.24450 * 10 9 7 12 12 N 1.46962 * 108.63415 * 310.58539 * 11 10 9 13 13 C 1.34779 * 120.59130 * 235.19465 * 12 11 10 14 14 O 1.21536 * 119.99720 * 5.97582 * 13 12 11 15 15 C 1.48004 * 120.00176 * 185.96675 * 13 12 11 16 16 C 1.38894 * 121.16549 * 53.76474 * 15 13 12 17 17 C 1.39348 * 119.66642 * 180.02562 * 16 15 13 18 18 N 1.31103 * 121.90629 * 359.95171 * 17 16 15 19 19 C 1.33289 * 121.62079 * 0.02562 * 18 17 16 20 20 C 1.40834 * 121.92568 * 180.02562 * 19 18 17 21 21 C 1.36166 * 118.77117 * 179.97438 * 20 19 18 22 22 N 1.32542 * 121.95940 * 0.02562 * 21 20 19 23 23 C 1.31331 * 122.60105 * 0.02562 * 22 21 20 24 24 C 1.40087 * 119.88015 * 359.97438 * 23 22 21 25 25 C 1.46957 * 118.81748 * 55.47379 * 12 11 10 26 26 C 1.46957 * 120.59385 * 35.70949 * 9 7 2 27 27 H 0.97000 * 120.00037 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.61171 * 115.50670 * 10 9 7 29 29 H 1.08994 * 109.75707 * 355.07648 * 10 9 7 30 30 H 1.08994 * 109.61279 * 190.83227 * 11 10 9 31 31 H 1.09002 * 109.60384 * 70.32165 * 11 10 9 32 32 H 1.07993 * 120.16608 * 0.02562 * 16 15 13 33 33 H 1.07996 * 119.04807 * 179.97438 * 17 16 15 34 34 H 1.07993 * 120.61385 * 0.25252 * 20 19 18 35 35 H 1.07994 * 119.02252 * 179.97438 * 21 20 19 36 36 H 1.08009 * 120.06470 * 179.97438 * 23 22 21 37 37 H 1.09000 * 109.61085 * 64.26253 * 25 12 11 38 38 H 1.09003 * 109.61157 * 184.77608 * 25 12 11 39 39 H 1.09001 * 109.61103 * 244.49659 * 26 9 7 40 40 H 1.09004 * 109.61361 * 5.00480 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0884 -1.2033 -0.0643 9 7 1.3281 -2.3866 0.0833 10 6 1.8886 -3.5219 0.8293 11 6 1.9535 -4.7374 -0.1038 12 7 0.6480 -4.8960 -0.7598 13 6 -0.0230 -6.0621 -0.6791 14 8 0.3966 -6.9570 0.0281 15 6 -1.2710 -6.2528 -1.4516 16 6 -1.3069 -6.0393 -2.8235 17 6 -2.4991 -6.2276 -3.5199 18 7 -3.6010 -6.6047 -2.9180 19 6 -3.6386 -6.8278 -1.6044 20 6 -4.8185 -7.2335 -0.9513 21 6 -4.7840 -7.4440 0.3935 22 7 -3.6759 -7.2777 1.1015 23 6 -2.5404 -6.9004 0.5602 24 6 -2.4706 -6.6581 -0.8178 25 6 0.0901 -3.7625 -1.5104 26 6 0.0226 -2.5452 -0.5726 27 1 -0.4850 0.8400 -0.0004 28 1 1.2502 -3.7499 1.6829 29 1 2.8912 -3.2747 1.1781 30 1 2.1829 -5.6316 0.4757 31 1 2.7247 -4.5791 -0.8576 32 1 -0.4153 -5.7289 -3.3479 33 1 -2.5157 -6.0584 -4.5864 34 1 -5.7326 -7.3795 -1.5076 35 1 -5.6866 -7.7548 0.8985 36 1 -1.6618 -6.7772 1.1763 37 1 0.7318 -3.5363 -2.3620 38 1 -0.9115 -4.0128 -1.8602 39 1 -0.7487 -2.7035 0.1812 40 1 -0.2068 -1.6509 -1.1521 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275113607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:49 Heat of formation + Delta-G solvation = 71.407979 kcal Electronic energy + Delta-G solvation = -25748.673741 eV Core-core repulsion = 22143.651779 eV Total energy + Delta-G solvation = -3605.021962 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.50730 -39.63528 -38.09735 -36.94590 -34.17743 -33.65550 -31.72473 -31.50922 -30.59509 -30.14313 -27.28878 -25.50448 -24.39529 -24.03156 -23.28596 -22.60991 -20.76775 -19.32100 -18.67971 -17.86749 -17.36574 -16.71084 -16.01719 -15.79728 -15.16495 -14.92989 -14.78772 -14.76891 -14.55437 -14.24515 -13.72745 -13.53751 -13.45722 -13.27396 -13.16864 -12.92289 -12.43733 -12.17899 -11.84078 -11.28326 -10.99149 -10.82576 -10.76222 -10.59963 -10.42030 -10.21812 -10.19205 -9.98761 -9.78841 -9.49382 -9.43503 -8.67286 -8.59836 -8.45672 -6.71194 -5.94116 -3.49992 -0.10784 0.51325 1.49579 2.62695 2.83796 3.13619 3.29185 3.35433 3.36024 3.89563 3.94554 4.22576 4.26885 4.35910 4.43126 4.53378 4.55236 4.98955 5.11386 5.17154 5.24846 5.26197 5.41963 5.58333 5.66511 5.67914 5.73826 5.77639 5.81282 5.99436 6.04186 6.15788 6.24168 6.30947 6.43665 6.68175 6.77995 7.12651 7.46447 7.54316 7.62289 7.65872 7.78317 8.17968 8.34644 9.06124 9.63717 10.23298 11.11377 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.018398 B = 0.003812 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.518848 B = 7343.546707 C = 7572.129246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.013 3.987 3 Si 0.907 3.093 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.131 3.869 11 C 0.094 3.906 12 N -0.580 5.580 13 C 0.548 3.452 14 O -0.540 6.540 15 C -0.023 4.023 16 C -0.150 4.150 17 C 0.154 3.846 18 N -0.471 5.471 19 C 0.158 3.842 20 C -0.148 4.148 21 C 0.093 3.907 22 N -0.487 5.487 23 C 0.175 3.825 24 C -0.137 4.137 25 C 0.072 3.928 26 C 0.154 3.846 27 H 0.258 0.742 28 H 0.025 0.975 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.149 0.851 33 H 0.171 0.829 34 H 0.147 0.853 35 H 0.161 0.839 36 H 0.171 0.829 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.021 0.979 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.553 -11.910 -6.249 14.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.187 4.187 3 Si 0.736 3.264 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.004 3.996 11 C -0.030 4.030 12 N -0.311 5.311 13 C 0.335 3.665 14 O -0.420 6.420 15 C -0.037 4.037 16 C -0.170 4.170 17 C -0.019 4.019 18 N -0.179 5.179 19 C 0.031 3.969 20 C -0.168 4.168 21 C -0.051 4.051 22 N -0.194 5.194 23 C 0.003 3.997 24 C -0.142 4.142 25 C -0.052 4.052 26 C 0.028 3.972 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.167 0.833 33 H 0.188 0.812 34 H 0.165 0.835 35 H 0.178 0.822 36 H 0.188 0.812 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.039 0.961 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.455 -12.514 -5.356 15.065 hybrid contribution 1.182 1.262 -0.588 1.827 sum -5.273 -11.251 -5.944 13.774 Atomic orbital electron populations 1.69804 1.05468 1.25959 1.53612 1.25341 0.95550 0.98476 0.99282 0.86319 0.78941 0.82929 0.78247 1.20797 1.21487 1.20709 1.19131 0.90805 0.82916 1.46123 0.91591 1.43914 1.20122 1.10080 1.57355 1.21324 0.98515 0.87326 0.92453 1.22343 0.82684 1.00762 0.97175 1.48081 1.20603 1.11538 1.50869 1.18126 0.83323 0.83096 0.81989 1.90781 1.68736 1.42188 1.40246 1.20405 0.93405 0.95245 0.94615 1.22466 1.00739 1.00268 0.93556 1.23107 0.87034 0.91015 1.00740 1.67857 1.28826 1.12121 1.09137 1.18855 0.92675 0.95729 0.89596 1.21701 0.97712 1.01765 0.95631 1.22352 0.96471 0.95361 0.90946 1.67615 0.99038 1.12423 1.40372 1.23388 0.96015 0.89525 0.90772 1.19582 0.94027 1.03667 0.96894 1.23065 0.97556 0.88178 0.96438 1.21487 0.87213 0.94717 0.93833 0.93159 0.95654 0.91229 0.89650 0.91409 0.83279 0.81203 0.83502 0.82205 0.81224 0.91310 0.91176 0.96101 0.86646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 10.61 55.49 0.59 -24.03 16 2 C 0.01 0.33 5.32 -17.43 -0.09 0.23 16 3 Si 0.91 20.50 29.56 -169.99 -5.02 15.48 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.26 -6.66 9.55 -15.06 -0.14 -6.80 16 8 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 9 N -0.59 -13.84 2.97 -171.77 -0.51 -14.35 16 10 C 0.13 2.60 6.67 -3.60 -0.02 2.57 16 11 C 0.09 1.60 6.60 -3.60 -0.02 1.57 16 12 N -0.58 -9.85 2.94 -173.27 -0.51 -10.36 16 13 C 0.55 9.17 6.57 -12.26 -0.08 9.09 16 14 O -0.54 -10.19 15.27 5.33 0.08 -10.11 16 15 C -0.02 -0.34 4.67 -104.37 -0.49 -0.83 16 16 C -0.15 -1.74 7.85 -38.93 -0.31 -2.04 16 17 C 0.15 1.63 11.14 -17.45 -0.19 1.44 16 18 N -0.47 -6.08 10.33 -10.95 -0.11 -6.19 16 19 C 0.16 2.20 6.63 -84.88 -0.56 1.64 16 20 C -0.15 -1.74 10.08 -39.35 -0.40 -2.14 16 21 C 0.09 1.10 11.06 -17.99 -0.20 0.90 16 22 N -0.49 -7.13 10.31 -13.24 -0.14 -7.27 16 23 C 0.18 2.71 10.53 -17.07 -0.18 2.53 16 24 C -0.14 -2.06 5.76 -106.55 -0.61 -2.68 16 25 C 0.07 1.22 5.85 -3.37 -0.02 1.20 16 26 C 0.15 3.39 5.48 -3.37 -0.02 3.38 16 27 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.31 7.94 -51.93 -0.41 0.90 16 30 H 0.09 1.40 6.99 -51.93 -0.36 1.04 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.15 1.42 7.79 -52.49 -0.41 1.01 16 33 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.17 2.72 6.59 -52.48 -0.35 2.38 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.07 5.30 -51.93 -0.28 0.80 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.12 2.84 5.85 -51.93 -0.30 2.53 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -30.75 330.42 -8.60 -39.36 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -4.61 Total: 2.42 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: -3.34 Total: 10.07 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -0.68 Total: -62.20 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.75 -8.60 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275113607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.764 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds