Wall clock time and date at job start Fri Apr 10 2020 18:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00032 * 2 1 4 4 H 1.48499 * 109.46813 * 240.00117 * 3 2 1 5 5 H 1.48502 * 109.46742 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47311 * 119.99731 * 3 2 1 7 7 C 1.38806 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00567 * 176.02253 * 7 2 1 9 9 N 1.36945 * 119.99730 * 356.02178 * 7 2 1 10 10 C 1.46962 * 120.59046 * 215.68506 * 9 7 2 11 11 C 1.53372 * 108.63627 * 235.24450 * 10 9 7 12 12 N 1.46962 * 108.63415 * 310.58539 * 11 10 9 13 13 C 1.34779 * 120.59130 * 235.19465 * 12 11 10 14 14 O 1.21536 * 119.99720 * 5.97582 * 13 12 11 15 15 C 1.48004 * 120.00176 * 185.96675 * 13 12 11 16 16 C 1.38894 * 121.16549 * 53.76474 * 15 13 12 17 17 C 1.39348 * 119.66642 * 180.02562 * 16 15 13 18 18 N 1.31103 * 121.90629 * 359.95171 * 17 16 15 19 19 C 1.33289 * 121.62079 * 0.02562 * 18 17 16 20 20 C 1.40834 * 121.92568 * 180.02562 * 19 18 17 21 21 C 1.36166 * 118.77117 * 179.97438 * 20 19 18 22 22 N 1.32542 * 121.95940 * 0.02562 * 21 20 19 23 23 C 1.31331 * 122.60105 * 0.02562 * 22 21 20 24 24 C 1.40087 * 119.88015 * 359.97438 * 23 22 21 25 25 C 1.46957 * 118.81748 * 55.47379 * 12 11 10 26 26 C 1.46957 * 120.59385 * 35.70949 * 9 7 2 27 27 H 0.97000 * 120.00037 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.61171 * 115.50670 * 10 9 7 29 29 H 1.08994 * 109.75707 * 355.07648 * 10 9 7 30 30 H 1.08994 * 109.61279 * 190.83227 * 11 10 9 31 31 H 1.09002 * 109.60384 * 70.32165 * 11 10 9 32 32 H 1.07993 * 120.16608 * 0.02562 * 16 15 13 33 33 H 1.07996 * 119.04807 * 179.97438 * 17 16 15 34 34 H 1.07993 * 120.61385 * 0.25252 * 20 19 18 35 35 H 1.07994 * 119.02252 * 179.97438 * 21 20 19 36 36 H 1.08009 * 120.06470 * 179.97438 * 23 22 21 37 37 H 1.09000 * 109.61085 * 64.26253 * 25 12 11 38 38 H 1.09003 * 109.61157 * 184.77608 * 25 12 11 39 39 H 1.09001 * 109.61103 * 244.49659 * 26 9 7 40 40 H 1.09004 * 109.61361 * 5.00480 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0884 -1.2033 -0.0643 9 7 1.3281 -2.3866 0.0833 10 6 1.8886 -3.5219 0.8293 11 6 1.9535 -4.7374 -0.1038 12 7 0.6480 -4.8960 -0.7598 13 6 -0.0230 -6.0621 -0.6791 14 8 0.3966 -6.9570 0.0281 15 6 -1.2710 -6.2528 -1.4516 16 6 -1.3069 -6.0393 -2.8235 17 6 -2.4991 -6.2276 -3.5199 18 7 -3.6010 -6.6047 -2.9180 19 6 -3.6386 -6.8278 -1.6044 20 6 -4.8185 -7.2335 -0.9513 21 6 -4.7840 -7.4440 0.3935 22 7 -3.6759 -7.2777 1.1015 23 6 -2.5404 -6.9004 0.5602 24 6 -2.4706 -6.6581 -0.8178 25 6 0.0901 -3.7625 -1.5104 26 6 0.0226 -2.5452 -0.5726 27 1 -0.4850 0.8400 -0.0004 28 1 1.2502 -3.7499 1.6829 29 1 2.8912 -3.2747 1.1781 30 1 2.1829 -5.6316 0.4757 31 1 2.7247 -4.5791 -0.8576 32 1 -0.4153 -5.7289 -3.3479 33 1 -2.5157 -6.0584 -4.5864 34 1 -5.7326 -7.3795 -1.5076 35 1 -5.6866 -7.7548 0.8985 36 1 -1.6618 -6.7772 1.1763 37 1 0.7318 -3.5363 -2.3620 38 1 -0.9115 -4.0128 -1.8602 39 1 -0.7487 -2.7035 0.1812 40 1 -0.2068 -1.6509 -1.1521 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275113607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:49 Heat of formation + Delta-G solvation = 51.678676 kcal Electronic energy + Delta-G solvation = -25749.529268 eV Core-core repulsion = 22143.651779 eV Total energy + Delta-G solvation = -3605.877489 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.54451 -40.93880 -39.08748 -38.51556 -35.75011 -34.83327 -33.19608 -32.69261 -31.95853 -31.44678 -28.91064 -26.72099 -25.57564 -25.27685 -24.74204 -24.02209 -22.21659 -20.64086 -19.82827 -19.12587 -18.53450 -18.07173 -17.52624 -17.02365 -16.72969 -16.29158 -15.89034 -15.78542 -15.65816 -15.44166 -15.28569 -15.16267 -15.04029 -14.62295 -14.34043 -13.93868 -13.77593 -13.43190 -13.09572 -13.00966 -12.79018 -12.49520 -12.27341 -12.11165 -12.00179 -11.82444 -11.71575 -11.41986 -10.92539 -10.59456 -10.49987 -10.47074 -9.95048 -9.60304 -8.58526 -7.89298 -5.48714 -1.11678 -0.44123 0.44921 1.37304 1.49482 1.51928 1.57555 1.77776 1.94422 2.48948 2.90000 3.02282 3.11732 3.26617 3.27613 3.42349 3.55955 3.58351 3.60675 4.11071 4.14794 4.21007 4.22100 4.26979 4.37627 4.53177 4.54543 4.60653 4.61291 4.72101 4.75516 4.78223 4.84217 5.05313 5.20720 5.25137 5.46297 5.50564 5.62088 5.67805 6.24864 6.41231 6.60653 6.76499 6.85711 7.12502 7.75682 8.31742 9.13349 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.018398 B = 0.003812 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.518848 B = 7343.546707 C = 7572.129246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.038 4.038 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.296 1.296 6 H -0.280 1.280 7 C -0.268 4.268 8 H 0.072 0.928 9 N -0.609 5.609 10 C 0.130 3.870 11 C 0.104 3.896 12 N -0.585 5.585 13 C 0.554 3.446 14 O -0.567 6.567 15 C -0.054 4.054 16 C -0.130 4.130 17 C 0.163 3.837 18 N -0.478 5.478 19 C 0.139 3.861 20 C -0.137 4.137 21 C 0.085 3.915 22 N -0.503 5.503 23 C 0.148 3.852 24 C -0.151 4.151 25 C 0.092 3.908 26 C 0.160 3.840 27 H 0.252 0.748 28 H 0.006 0.994 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.176 0.824 33 H 0.218 0.782 34 H 0.177 0.823 35 H 0.196 0.804 36 H 0.150 0.850 37 H 0.087 0.913 38 H 0.090 0.910 39 H -0.013 1.013 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.813 -12.494 -8.697 16.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.234 4.234 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.222 1.222 6 H -0.206 1.206 7 C -0.398 4.398 8 H 0.090 0.910 9 N -0.332 5.332 10 C 0.004 3.996 11 C -0.019 4.019 12 N -0.315 5.315 13 C 0.342 3.658 14 O -0.447 6.447 15 C -0.067 4.067 16 C -0.151 4.151 17 C -0.011 4.011 18 N -0.186 5.186 19 C 0.013 3.987 20 C -0.157 4.157 21 C -0.060 4.060 22 N -0.212 5.212 23 C -0.023 4.023 24 C -0.156 4.156 25 C -0.031 4.031 26 C 0.033 3.967 27 H 0.062 0.938 28 H 0.024 0.976 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.194 0.806 33 H 0.235 0.765 34 H 0.194 0.806 35 H 0.213 0.787 36 H 0.167 0.833 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.005 0.995 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.699 -13.125 -7.798 16.672 hybrid contribution 1.211 1.393 0.166 1.853 sum -5.487 -11.732 -7.633 15.034 Atomic orbital electron populations 1.70000 1.06750 1.26086 1.55068 1.26035 0.96227 1.01440 0.99666 0.85335 0.77582 0.79033 0.78409 1.19675 1.22206 1.20608 1.19469 0.91290 0.83853 1.45182 0.91045 1.44151 1.20274 1.10518 1.58306 1.21396 0.98280 0.87537 0.92392 1.22182 0.83375 0.99287 0.97074 1.48082 1.20654 1.11686 1.51098 1.18407 0.83578 0.82395 0.81402 1.90756 1.69523 1.43048 1.41380 1.20293 0.92347 0.98210 0.95897 1.22868 1.02221 0.97820 0.92152 1.23888 0.85736 0.88875 1.02583 1.67958 1.29835 1.12406 1.08424 1.19176 0.92901 0.96370 0.90219 1.22076 0.98096 0.99865 0.95679 1.22925 0.96590 0.95031 0.91420 1.67567 0.99630 1.12518 1.41460 1.23144 0.96062 0.91794 0.91303 1.19651 0.94911 1.04270 0.96724 1.22761 0.99244 0.85891 0.95237 1.21242 0.85957 0.96057 0.93422 0.93806 0.97555 0.90324 0.89064 0.89755 0.80634 0.76541 0.80553 0.78686 0.83268 0.89520 0.89165 0.99530 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.07 10.61 21.65 0.23 -51.84 16 2 C -0.04 -1.98 5.32 84.86 0.45 -1.53 16 3 Si 0.97 42.28 29.56 68.60 2.03 44.31 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.30 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.27 -13.75 9.55 84.03 0.80 -12.95 16 8 H 0.07 3.52 7.83 -2.91 -0.02 3.49 16 9 N -0.61 -28.81 2.97 -697.36 -2.07 -30.89 16 10 C 0.13 5.23 6.67 86.42 0.58 5.80 16 11 C 0.10 3.48 6.60 86.42 0.57 4.05 16 12 N -0.58 -19.45 2.94 -820.39 -2.41 -21.86 16 13 C 0.55 18.43 6.57 86.83 0.57 19.01 16 14 O -0.57 -21.75 15.27 -3.83 -0.06 -21.81 16 15 C -0.05 -1.54 4.67 -19.70 -0.09 -1.63 16 16 C -0.13 -2.62 7.85 22.69 0.18 -2.44 16 17 C 0.16 2.80 11.14 85.07 0.95 3.75 16 18 N -0.48 -10.91 10.33 -188.55 -1.95 -12.86 16 19 C 0.14 3.65 6.63 40.45 0.27 3.92 16 20 C -0.14 -2.96 10.08 22.42 0.23 -2.73 16 21 C 0.08 1.89 11.06 84.10 0.93 2.82 16 22 N -0.50 -15.01 10.31 -195.80 -2.02 -17.03 16 23 C 0.15 4.81 10.53 85.22 0.90 5.71 16 24 C -0.15 -4.53 5.76 -21.11 -0.12 -4.65 16 25 C 0.09 3.04 5.85 86.57 0.51 3.55 16 26 C 0.16 7.19 5.48 86.57 0.47 7.66 16 27 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 28 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.08 2.95 7.94 -2.39 -0.02 2.93 16 30 H 0.09 2.96 6.99 -2.39 -0.02 2.94 16 31 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.18 2.56 7.79 -2.91 -0.02 2.54 16 33 H 0.22 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.18 2.65 8.06 -2.91 -0.02 2.62 16 35 H 0.20 2.75 8.06 -2.91 -0.02 2.72 16 36 H 0.15 5.25 6.59 -2.91 -0.02 5.23 16 37 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.09 2.61 5.30 -2.39 -0.01 2.60 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.09 4.56 5.85 -2.39 -0.01 4.55 16 Total: -1.00 -69.12 330.42 2.01 -67.12 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.08 Total: 14.52 kcal Atomic # 6 Polarization: 23.15 SS G_CDS: 7.19 Total: 30.33 kcal Atomic # 7 Polarization: -126.25 SS G_CDS: -8.22 Total: -134.47 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.06 Total: -21.81 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -69.12 2.01 -67.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275113607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.794 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds