Wall clock time and date at job start Fri Apr 10 2020 18:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.50602 * 2 1 4 4 C 1.53093 * 109.50733 * 239.91091 * 2 1 3 5 5 N 1.47007 * 109.26186 * 183.21813 * 4 2 1 6 6 C 1.46899 * 111.00514 * 182.39094 * 5 4 2 7 7 C 1.52994 * 109.47351 * 169.99773 * 6 5 4 8 8 S 1.80995 * 109.47217 * 180.02562 * 7 6 5 9 9 C 1.76206 * 100.00281 * 180.02562 * 8 7 6 10 10 N 1.32386 * 126.25570 * 0.02562 * 9 8 7 11 11 N 1.28517 * 110.20353 * 179.97438 * 10 9 8 12 12 C 1.33094 * 109.74581 * 359.75765 * 11 10 9 13 13 C 1.39768 * 126.56627 * 180.24509 * 12 11 10 14 14 H 1.08005 * 120.00070 * 180.16476 * 13 12 11 15 15 C 1.40083 * 120.00056 * 0.15924 * 13 12 11 16 16 N 1.30807 * 120.00075 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99976 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47195 * 59.99934 * 17 15 13 19 19 H 1.48499 * 109.46831 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46953 * 299.99446 * 17 15 13 21 21 N 1.36665 * 126.26246 * 180.02562 * 9 8 7 22 22 C 1.46506 * 127.14852 * 359.97438 * 21 9 8 23 23 C 1.47019 * 110.75144 * 58.61280 * 5 4 2 24 24 C 1.53099 * 109.26052 * 301.38996 * 23 5 4 25 25 O 1.43013 * 109.25827 * 56.84583 * 24 23 5 26 26 H 1.08996 * 109.47176 * 180.08683 * 1 2 3 27 27 H 1.09003 * 109.46541 * 300.09159 * 1 2 3 28 28 H 1.08999 * 109.46931 * 60.08314 * 1 2 3 29 29 H 1.09001 * 109.50561 * 63.28294 * 4 2 1 30 30 H 1.09002 * 109.50574 * 303.15382 * 4 2 1 31 31 H 1.09009 * 109.46804 * 50.00242 * 6 5 4 32 32 H 1.08998 * 109.47155 * 290.00255 * 6 5 4 33 33 H 1.09001 * 109.46931 * 60.00171 * 7 6 5 34 34 H 1.08998 * 109.47385 * 300.00342 * 7 6 5 35 35 H 0.96996 * 120.00716 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47060 * 90.03095 * 22 21 9 37 37 H 1.09004 * 109.47073 * 210.02583 * 22 21 9 38 38 H 1.09000 * 109.47212 * 330.02666 * 22 21 9 39 39 H 1.09005 * 109.50330 * 61.32703 * 23 5 4 40 40 H 1.09002 * 109.50722 * 181.45124 * 23 5 4 41 41 H 1.08997 * 109.50116 * 296.91412 * 24 23 5 42 42 H 1.09002 * 109.53767 * 176.80187 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7235 -1.2486 5 7 3.5093 -0.7881 -1.2047 6 6 4.0447 -1.4261 -2.4148 7 6 5.5644 -1.2540 -2.4523 8 16 6.2240 -2.0395 -3.9436 9 6 7.9403 -1.6996 -3.7350 10 7 8.4914 -1.0422 -2.7266 11 7 9.7649 -0.9730 -2.8850 12 6 10.1122 -1.5913 -4.0113 13 6 11.4067 -1.7308 -4.5194 14 1 11.5680 -2.2542 -5.4503 15 6 12.4951 -1.1918 -3.8214 16 7 12.2999 -0.5583 -2.6937 17 14 14.2252 -1.3777 -4.5010 18 1 14.3033 -0.7364 -5.8380 19 1 15.1910 -0.7249 -3.5811 20 1 14.5565 -2.8201 -4.6235 21 7 8.9461 -2.0663 -4.5845 22 6 8.8169 -2.8134 -5.8382 23 6 3.9639 -1.4885 0.0053 24 6 3.4334 -0.7573 1.2414 25 8 2.0076 -0.6767 1.1660 26 1 -0.3633 -1.0276 0.0016 27 1 -0.3632 0.5153 0.8892 28 1 -0.3633 0.5125 -0.8907 29 1 1.7274 -0.1787 -2.1390 30 1 1.6332 -1.7338 -1.2765 31 1 3.6044 -0.9601 -3.2964 32 1 3.7994 -2.4881 -2.4044 33 1 6.0047 -1.7199 -1.5707 34 1 5.8097 -0.1920 -2.4627 35 1 13.0534 -0.1846 -2.2105 36 1 8.6728 -2.1162 -6.6635 37 1 9.7222 -3.3962 -6.0088 38 1 7.9598 -3.4839 -5.7750 39 1 3.5866 -2.5111 -0.0026 40 1 5.0536 -1.5021 0.0302 41 1 3.8534 0.2478 1.2778 42 1 3.7201 -1.3044 2.1396 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279882678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:57 Heat of formation + Delta-G solvation = 25.658607 kcal Electronic energy + Delta-G solvation = -23196.760790 eV Core-core repulsion = 19725.198938 eV Total energy + Delta-G solvation = -3471.561852 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.51172 -39.85596 -36.33798 -33.70838 -33.33612 -33.05776 -31.06115 -29.33686 -28.55239 -26.53512 -25.71855 -25.24479 -23.66637 -21.68959 -20.82086 -20.56295 -20.24663 -17.36759 -16.74013 -16.56820 -16.15568 -15.61705 -15.44522 -15.23876 -14.86102 -14.71667 -14.57511 -14.18424 -13.79696 -13.35850 -12.90509 -12.83466 -12.62137 -12.37915 -12.31713 -12.21777 -11.98118 -11.67853 -11.37548 -11.35826 -11.30247 -11.08263 -10.93688 -10.64332 -10.42344 -10.23337 -9.77670 -9.72841 -9.61517 -8.71073 -8.56488 -8.43684 -8.38822 -6.85786 -6.65756 -4.58660 1.97004 2.79887 2.92056 3.05283 3.07554 3.35306 3.54196 3.73429 3.86520 4.23098 4.41657 4.53657 4.72426 4.78839 4.91692 4.98839 5.07321 5.12592 5.29279 5.31572 5.31811 5.40529 5.42311 5.49984 5.53869 5.65617 5.72007 5.82035 5.87132 5.87518 5.89443 6.02830 6.19531 6.75212 6.76216 6.79299 6.87680 7.01736 7.23230 7.47637 7.88005 8.16220 8.68980 8.84725 10.26768 10.63052 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.028535 B = 0.002593 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.014983 B =10795.469243 C =11573.562313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.025 3.975 5 N -0.533 5.533 6 C 0.073 3.927 7 C -0.087 4.087 8 S -0.058 6.058 9 C 0.048 3.952 10 N -0.284 5.284 11 N -0.333 5.333 12 C 0.346 3.654 13 C -0.447 4.447 14 H 0.084 0.916 15 C 0.078 3.922 16 N -0.737 5.737 17 Si 0.921 3.079 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.265 1.265 21 N -0.516 5.516 22 C 0.102 3.898 23 C 0.012 3.988 24 C 0.065 3.935 25 O -0.386 6.386 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.280 0.720 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.043 0.957 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.095 -1.912 0.912 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.086 0.914 4 C -0.103 4.103 5 N -0.258 5.258 6 C -0.056 4.056 7 C -0.237 4.237 8 S 0.168 5.832 9 C -0.324 4.324 10 N -0.130 5.130 11 N -0.181 5.181 12 C 0.102 3.898 13 C -0.487 4.487 14 H 0.102 0.898 15 C -0.148 4.148 16 N -0.360 5.360 17 Si 0.745 3.255 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.190 1.190 21 N -0.218 5.218 22 C -0.043 4.043 23 C -0.116 4.116 24 C -0.012 4.012 25 O -0.305 6.305 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.424 -1.174 1.717 17.548 hybrid contribution 1.478 -0.949 -0.947 1.996 sum -15.946 -2.123 0.769 16.105 Atomic orbital electron populations 1.21748 0.92880 1.02884 1.02655 1.22154 0.94689 0.95792 0.84336 0.91415 1.22816 0.87739 1.00252 0.99523 1.62140 1.08505 1.53074 1.02091 1.21801 0.93351 0.97578 0.92849 1.23249 0.96270 1.05415 0.98759 1.84222 0.93945 1.73335 1.31688 1.25206 0.93930 1.15406 0.97838 1.74543 1.04852 1.14689 1.18886 1.75465 1.00384 1.26166 1.16076 1.21618 0.86707 0.91876 0.89591 1.18064 0.87315 1.35145 1.08199 0.89837 1.25798 1.01081 0.93590 0.94286 1.69993 1.33148 1.22111 1.10790 0.86174 0.80351 0.79467 0.79528 1.18951 1.20060 1.18972 1.46031 1.06261 1.49265 1.20253 1.21489 1.02506 0.95613 0.84705 1.22902 1.02178 0.96104 0.90418 1.22660 0.80565 1.00677 0.97266 1.87965 1.21381 1.78368 1.42753 0.91933 0.91571 0.90913 0.89578 0.93930 0.89799 0.93882 0.89241 0.88296 0.90895 0.92552 0.90374 0.91580 0.93839 0.88687 0.92017 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.57 37.16 0.36 -0.71 16 2 C 0.09 0.86 3.43 -26.68 -0.09 0.77 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 4 C 0.03 0.25 4.93 -3.72 -0.02 0.23 16 5 N -0.53 -6.37 4.73 -234.31 -1.11 -7.48 16 6 C 0.07 0.91 4.96 -3.83 -0.02 0.89 16 7 C -0.09 -1.39 5.16 37.15 0.19 -1.20 16 8 S -0.06 -1.04 21.78 -107.50 -2.34 -3.38 16 9 C 0.05 1.16 8.09 -87.28 -0.71 0.46 16 10 N -0.28 -7.84 11.62 30.89 0.36 -7.48 16 11 N -0.33 -10.09 10.48 31.26 0.33 -9.77 16 12 C 0.35 9.74 7.53 -154.82 -1.17 8.58 16 13 C -0.45 -11.86 9.04 -38.32 -0.35 -12.21 16 14 H 0.08 2.00 7.29 -52.48 -0.38 1.62 16 15 C 0.08 2.00 5.50 -17.30 -0.10 1.90 16 16 N -0.74 -20.30 11.94 55.56 0.66 -19.64 16 17 Si 0.92 18.51 29.56 -169.99 -5.03 13.49 16 18 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 19 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 21 N -0.52 -12.54 3.26 -123.17 -0.40 -12.95 16 22 C 0.10 1.87 10.88 59.85 0.65 2.52 16 23 C 0.01 0.14 5.44 -3.71 -0.02 0.12 16 24 C 0.07 0.70 7.01 37.21 0.26 0.96 16 25 O -0.39 -4.47 10.47 -35.23 -0.37 -4.84 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.97 8.04 -51.92 -0.42 0.55 16 32 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 33 H 0.09 1.53 6.52 -51.92 -0.34 1.19 16 34 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16 35 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.34 7.51 -51.93 -0.39 0.95 16 38 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 39 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 1.18 6.38 -51.93 -0.33 0.85 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -33.13 356.19 -10.00 -43.13 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.47 Total: 1.24 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -1.00 Total: 2.31 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.16 Total: -57.31 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.37 Total: -4.84 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -2.34 Total: -3.38 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.13 -10.00 -43.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279882678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.785 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds