Wall clock time and date at job start Fri Apr 10 2020 18:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.50602 * 2 1 4 4 C 1.53093 * 109.50733 * 239.91091 * 2 1 3 5 5 N 1.47007 * 109.26186 * 183.21813 * 4 2 1 6 6 C 1.46899 * 111.00514 * 182.39094 * 5 4 2 7 7 C 1.52994 * 109.47351 * 169.99773 * 6 5 4 8 8 S 1.80995 * 109.47217 * 180.02562 * 7 6 5 9 9 C 1.76206 * 100.00281 * 180.02562 * 8 7 6 10 10 N 1.32386 * 126.25570 * 0.02562 * 9 8 7 11 11 N 1.28517 * 110.20353 * 179.97438 * 10 9 8 12 12 C 1.33094 * 109.74581 * 359.75765 * 11 10 9 13 13 C 1.39768 * 126.56627 * 180.24509 * 12 11 10 14 14 H 1.08005 * 120.00070 * 180.16476 * 13 12 11 15 15 C 1.40083 * 120.00056 * 0.15924 * 13 12 11 16 16 N 1.30807 * 120.00075 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99976 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47195 * 59.99934 * 17 15 13 19 19 H 1.48499 * 109.46831 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46953 * 299.99446 * 17 15 13 21 21 N 1.36665 * 126.26246 * 180.02562 * 9 8 7 22 22 C 1.46506 * 127.14852 * 359.97438 * 21 9 8 23 23 C 1.47019 * 110.75144 * 58.61280 * 5 4 2 24 24 C 1.53099 * 109.26052 * 301.38996 * 23 5 4 25 25 O 1.43013 * 109.25827 * 56.84583 * 24 23 5 26 26 H 1.08996 * 109.47176 * 180.08683 * 1 2 3 27 27 H 1.09003 * 109.46541 * 300.09159 * 1 2 3 28 28 H 1.08999 * 109.46931 * 60.08314 * 1 2 3 29 29 H 1.09001 * 109.50561 * 63.28294 * 4 2 1 30 30 H 1.09002 * 109.50574 * 303.15382 * 4 2 1 31 31 H 1.09009 * 109.46804 * 50.00242 * 6 5 4 32 32 H 1.08998 * 109.47155 * 290.00255 * 6 5 4 33 33 H 1.09001 * 109.46931 * 60.00171 * 7 6 5 34 34 H 1.08998 * 109.47385 * 300.00342 * 7 6 5 35 35 H 0.96996 * 120.00716 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47060 * 90.03095 * 22 21 9 37 37 H 1.09004 * 109.47073 * 210.02583 * 22 21 9 38 38 H 1.09000 * 109.47212 * 330.02666 * 22 21 9 39 39 H 1.09005 * 109.50330 * 61.32703 * 23 5 4 40 40 H 1.09002 * 109.50722 * 181.45124 * 23 5 4 41 41 H 1.08997 * 109.50116 * 296.91412 * 24 23 5 42 42 H 1.09002 * 109.53767 * 176.80187 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7235 -1.2486 5 7 3.5093 -0.7881 -1.2047 6 6 4.0447 -1.4261 -2.4148 7 6 5.5644 -1.2540 -2.4523 8 16 6.2240 -2.0395 -3.9436 9 6 7.9403 -1.6996 -3.7350 10 7 8.4914 -1.0422 -2.7266 11 7 9.7649 -0.9730 -2.8850 12 6 10.1122 -1.5913 -4.0113 13 6 11.4067 -1.7308 -4.5194 14 1 11.5680 -2.2542 -5.4503 15 6 12.4951 -1.1918 -3.8214 16 7 12.2999 -0.5583 -2.6937 17 14 14.2252 -1.3777 -4.5010 18 1 14.3033 -0.7364 -5.8380 19 1 15.1910 -0.7249 -3.5811 20 1 14.5565 -2.8201 -4.6235 21 7 8.9461 -2.0663 -4.5845 22 6 8.8169 -2.8134 -5.8382 23 6 3.9639 -1.4885 0.0053 24 6 3.4334 -0.7573 1.2414 25 8 2.0076 -0.6767 1.1660 26 1 -0.3633 -1.0276 0.0016 27 1 -0.3632 0.5153 0.8892 28 1 -0.3633 0.5125 -0.8907 29 1 1.7274 -0.1787 -2.1390 30 1 1.6332 -1.7338 -1.2765 31 1 3.6044 -0.9601 -3.2964 32 1 3.7994 -2.4881 -2.4044 33 1 6.0047 -1.7199 -1.5707 34 1 5.8097 -0.1920 -2.4627 35 1 13.0534 -0.1846 -2.2105 36 1 8.6728 -2.1162 -6.6635 37 1 9.7222 -3.3962 -6.0088 38 1 7.9598 -3.4839 -5.7750 39 1 3.5866 -2.5111 -0.0026 40 1 5.0536 -1.5021 0.0302 41 1 3.8534 0.2478 1.2778 42 1 3.7201 -1.3044 2.1396 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279882678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:56 Heat of formation + Delta-G solvation = 3.485425 kcal Electronic energy + Delta-G solvation = -23197.722292 eV Core-core repulsion = 19725.198938 eV Total energy + Delta-G solvation = -3472.523354 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.46190 -40.71956 -37.28611 -35.63343 -35.16384 -33.81712 -32.18422 -31.29939 -29.40962 -28.26783 -27.45424 -26.26414 -24.60454 -22.91657 -22.72155 -21.96452 -21.37401 -19.26495 -17.95732 -17.56554 -17.41500 -17.16401 -16.70005 -16.45583 -16.24811 -16.05429 -15.75224 -15.46943 -15.08576 -14.89559 -14.18972 -13.95076 -13.78625 -13.62091 -13.48079 -13.13499 -13.09975 -12.94345 -12.82071 -12.76411 -12.64874 -12.13256 -12.10134 -12.03593 -11.80266 -11.66066 -11.47834 -11.41011 -10.64324 -10.58086 -10.37363 -10.28397 -9.48545 -8.55079 -8.54876 -6.59516 0.39843 1.19656 1.22644 1.41268 1.56826 1.61869 2.18049 2.44186 2.49828 2.72423 2.86746 3.33446 3.63683 3.82443 3.83972 3.97969 4.07442 4.14089 4.19119 4.22684 4.37608 4.45032 4.51135 4.60397 4.61414 4.63487 4.71241 4.74792 4.83021 4.87474 4.89839 4.94944 4.97808 5.09235 5.28665 5.31225 5.55570 5.81395 5.89595 6.02876 6.20237 6.20990 6.74909 6.91559 8.40556 8.63592 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.028535 B = 0.002593 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.014983 B =10795.469243 C =11573.562313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.082 3.918 3 H 0.063 0.937 4 C 0.027 3.973 5 N -0.545 5.545 6 C 0.084 3.916 7 C -0.084 4.084 8 S 0.001 5.999 9 C 0.054 3.946 10 N -0.330 5.330 11 N -0.390 5.390 12 C 0.316 3.684 13 C -0.471 4.471 14 H 0.104 0.896 15 C 0.028 3.972 16 N -0.789 5.789 17 Si 1.007 2.993 18 H -0.253 1.253 19 H -0.272 1.272 20 H -0.253 1.253 21 N -0.522 5.522 22 C 0.093 3.907 23 C 0.013 3.987 24 C 0.066 3.934 25 O -0.399 6.399 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.284 0.716 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.319 -2.934 -0.938 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.024 3.976 3 H 0.081 0.919 4 C -0.101 4.101 5 N -0.271 5.271 6 C -0.045 4.045 7 C -0.234 4.234 8 S 0.227 5.773 9 C -0.320 4.320 10 N -0.175 5.175 11 N -0.236 5.236 12 C 0.070 3.930 13 C -0.511 4.511 14 H 0.122 0.878 15 C -0.193 4.193 16 N -0.414 5.414 17 Si 0.826 3.174 18 H -0.177 1.177 19 H -0.197 1.197 20 H -0.177 1.177 21 N -0.224 5.224 22 C -0.050 4.050 23 C -0.115 4.115 24 C -0.010 4.010 25 O -0.318 6.318 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -18.678 -2.205 -0.146 18.808 hybrid contribution 1.634 -0.651 -0.381 1.800 sum -17.043 -2.856 -0.527 17.289 Atomic orbital electron populations 1.21747 0.90917 1.03222 1.03718 1.22347 0.96212 0.95286 0.83713 0.91948 1.22892 0.86085 1.00743 1.00364 1.62117 1.10052 1.53154 1.01796 1.21704 0.90428 0.98490 0.93875 1.23299 0.98872 1.03716 0.97477 1.83941 0.88576 1.72696 1.32109 1.26373 0.97067 1.12172 0.96341 1.74420 1.04495 1.17467 1.21091 1.75318 1.01786 1.28367 1.18134 1.22056 0.88391 0.92644 0.89918 1.18597 0.87382 1.35912 1.09224 0.87811 1.27011 1.05894 0.92298 0.94094 1.70149 1.34885 1.23600 1.12730 0.84896 0.73656 0.79970 0.78896 1.17714 1.19689 1.17682 1.46379 1.05254 1.49107 1.21623 1.21863 1.04249 0.96101 0.82741 1.22861 1.01294 0.96396 0.90923 1.22681 0.80448 1.00461 0.97455 1.87956 1.21494 1.78622 1.43740 0.91903 0.91487 0.88920 0.87860 0.93587 0.88181 0.92847 0.90693 0.90336 0.90522 0.90733 0.89294 0.89024 0.93609 0.90206 0.92610 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.57 71.98 0.69 -1.06 16 2 C 0.08 1.48 3.43 30.63 0.10 1.59 16 3 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 4 C 0.03 0.48 4.93 86.31 0.43 0.91 16 5 N -0.55 -12.42 4.73 -895.22 -4.23 -16.66 16 6 C 0.08 1.94 4.96 86.30 0.43 2.37 16 7 C -0.08 -2.65 5.16 71.98 0.37 -2.28 16 8 S 0.00 0.04 21.78 -56.49 -1.23 -1.19 16 9 C 0.05 2.64 8.09 179.18 1.45 4.09 16 10 N -0.33 -18.98 11.62 -56.17 -0.65 -19.63 16 11 N -0.39 -24.68 10.48 -55.03 -0.58 -25.26 16 12 C 0.32 18.26 7.53 133.23 1.00 19.27 16 13 C -0.47 -25.30 9.04 23.09 0.21 -25.10 16 14 H 0.10 4.90 7.29 -2.91 -0.02 4.88 16 15 C 0.03 1.44 5.50 85.29 0.47 1.91 16 16 N -0.79 -45.14 11.94 21.85 0.26 -44.87 16 17 Si 1.01 37.80 29.56 68.60 2.03 39.83 16 18 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 19 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 21 N -0.52 -25.36 3.26 -543.61 -1.77 -27.13 16 22 C 0.09 3.23 10.88 127.77 1.39 4.62 16 23 C 0.01 0.31 5.44 86.31 0.47 0.78 16 24 C 0.07 1.40 7.01 72.02 0.50 1.91 16 25 O -0.40 -8.87 10.47 -148.98 -1.56 -10.43 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 1.48 8.09 -2.39 -0.02 1.46 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 2.01 8.04 -2.38 -0.02 1.99 16 32 H 0.05 1.15 8.12 -2.39 -0.02 1.13 16 33 H 0.07 2.61 6.52 -2.39 -0.02 2.60 16 34 H 0.08 2.83 8.14 -2.40 -0.02 2.81 16 35 H 0.28 14.73 8.30 -92.71 -0.77 13.96 16 36 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.09 2.88 7.51 -2.38 -0.02 2.86 16 38 H 0.09 2.68 7.85 -2.39 -0.02 2.66 16 39 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.08 2.06 6.38 -2.39 -0.02 2.05 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -75.59 356.19 0.79 -74.80 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 1.01 Total: 21.54 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 7.51 Total: 9.00 kcal Atomic # 7 Polarization: -126.58 SS G_CDS: -6.97 Total: -133.55 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -1.56 Total: -10.43 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -1.23 Total: -1.19 kcal Total: -75.59 0.79 -74.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279882678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.283 kcal (2) G-P(sol) polarization free energy of solvation -75.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds