Wall clock time and date at job start Fri Apr 10 2020 18:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86801 * 120.00303 * 2 1 4 4 H 1.48493 * 109.47161 * 94.80634 * 3 2 1 5 5 H 1.48494 * 109.47561 * 214.81229 * 3 2 1 6 6 H 1.48503 * 109.46646 * 334.81140 * 3 2 1 7 7 C 1.40050 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00044 * 1.47819 * 7 2 1 9 9 C 1.46379 * 120.00082 * 181.47781 * 7 2 1 10 10 O 1.21688 * 119.99608 * 16.90938 * 9 7 2 11 11 N 1.34769 * 120.00115 * 196.91066 * 9 7 2 12 12 C 1.46969 * 120.59376 * 354.40065 * 11 9 7 13 13 C 1.53811 * 108.39828 * 124.75694 * 12 11 9 14 14 N 1.46963 * 108.57959 * 49.63816 * 13 12 11 15 15 C 1.34777 * 120.59550 * 124.62370 * 14 13 12 16 16 O 1.21281 * 120.00313 * 185.00277 * 15 14 13 17 17 C 1.50706 * 119.99934 * 5.00193 * 15 14 13 18 18 C 1.52578 * 109.22820 * 271.84702 * 17 15 14 19 19 C 1.53096 * 109.95786 * 169.00093 * 18 17 15 20 20 S 1.81752 * 108.83937 * 63.02755 * 19 18 17 21 21 C 1.81750 * 102.21789 * 306.73574 * 20 19 18 22 22 C 1.52582 * 109.22423 * 150.61175 * 17 15 14 23 23 C 1.46964 * 118.81258 * 304.64510 * 14 13 12 24 24 C 1.46964 * 120.59473 * 174.67476 * 11 9 7 25 25 H 0.97001 * 119.99836 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.60649 * 244.54091 * 12 11 9 27 27 H 1.08999 * 109.60942 * 5.04640 * 12 11 9 28 28 H 1.08996 * 109.74260 * 289.84525 * 13 12 11 29 29 H 1.09000 * 109.66966 * 169.38205 * 13 12 11 30 30 H 1.09004 * 109.22018 * 31.21110 * 17 15 14 31 31 H 1.08997 * 109.39243 * 289.15576 * 18 17 15 32 32 H 1.09010 * 109.38650 * 48.85255 * 18 17 15 33 33 H 1.08998 * 109.57573 * 303.22136 * 19 18 17 34 34 H 1.08998 * 109.57700 * 182.83406 * 19 18 17 35 35 H 1.09003 * 109.57436 * 293.45331 * 21 20 19 36 36 H 1.09002 * 109.57420 * 173.07239 * 21 20 19 37 37 H 1.09000 * 109.39017 * 311.14036 * 22 17 15 38 38 H 1.08990 * 109.39054 * 70.94938 * 22 17 15 39 39 H 1.09006 * 109.60822 * 295.48035 * 23 14 13 40 40 H 1.09001 * 109.75230 * 175.05822 * 23 14 13 41 41 H 1.08996 * 109.61032 * 354.95394 * 24 11 9 42 42 H 1.09004 * 109.60833 * 115.28973 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.5899 1.9877 1.3951 5 1 3.4837 1.4717 -0.7992 6 1 1.3910 2.6798 -0.5959 7 6 2.0069 -1.2129 -0.0005 8 1 1.4672 -2.1480 -0.0251 9 6 3.4704 -1.2131 0.0322 10 8 4.0716 -0.2091 0.3656 11 7 4.1518 -2.3253 -0.3071 12 6 3.4414 -3.5797 -0.5932 13 6 3.8578 -4.0652 -1.9920 14 7 5.3249 -4.0469 -2.0765 15 6 6.0065 -5.1594 -2.4149 16 8 7.2191 -5.1578 -2.3933 17 6 5.2617 -6.4053 -2.8200 18 6 4.9492 -7.2310 -1.5755 19 6 3.9654 -8.3508 -1.9248 20 16 4.7506 -9.4692 -3.1232 21 6 5.2805 -8.3223 -4.4297 22 6 6.1162 -7.2057 -3.7984 23 6 6.0356 -2.7940 -1.7849 24 6 5.6189 -2.3070 -0.3916 25 1 -0.4850 0.8401 0.0004 26 1 3.7084 -4.3293 0.1517 27 1 2.3659 -3.4044 -0.5702 28 1 3.4394 -3.4041 -2.7509 29 1 3.4949 -5.0806 -2.1511 30 1 4.3280 -6.1231 -3.3066 31 1 5.8708 -7.6663 -1.1892 32 1 4.5086 -6.5863 -0.8148 33 1 3.0639 -7.9216 -2.3621 34 1 3.7077 -8.9051 -1.0224 35 1 4.4046 -7.8927 -4.9159 36 1 5.8820 -8.8580 -5.1641 37 1 6.4859 -6.5436 -4.5814 38 1 6.9606 -7.6441 -3.2667 39 1 5.7723 -2.0424 -2.5292 40 1 7.1116 -2.9675 -1.8052 41 1 5.9817 -1.2911 -0.2355 42 1 6.0374 -2.9658 0.3692 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329167713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:36 Heat of formation + Delta-G solvation = -77.153562 kcal Electronic energy + Delta-G solvation = -24687.281165 eV Core-core repulsion = 21178.968292 eV Total energy + Delta-G solvation = -3508.312874 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.54462 -38.55343 -36.65382 -36.17447 -33.33473 -32.94795 -31.90747 -31.30082 -28.52111 -27.50473 -26.15523 -23.61944 -23.38381 -22.62761 -21.36714 -19.84897 -18.55067 -17.60213 -17.19333 -16.55182 -16.10485 -15.81043 -15.36220 -14.99326 -14.77194 -14.60531 -14.31507 -14.19397 -14.00488 -13.77584 -13.37431 -13.12694 -12.79040 -12.69251 -12.50471 -12.34804 -12.27377 -11.92561 -11.78234 -11.40242 -11.23175 -11.11079 -11.10556 -10.85964 -10.74342 -10.47171 -10.11629 -9.66308 -9.55730 -9.12990 -8.81842 -8.01706 -7.97406 -7.59969 -6.71165 -4.95543 1.46129 2.21722 2.53095 2.89675 3.37463 3.43083 3.68829 4.02001 4.09414 4.16846 4.26841 4.46379 4.47323 4.59107 4.71480 4.86312 4.99859 5.04337 5.08989 5.15388 5.21717 5.26733 5.35190 5.36414 5.44712 5.49688 5.58997 5.67520 5.73725 5.77158 5.88405 5.91928 6.08709 6.13528 6.28146 6.52791 6.91723 7.37936 7.46508 7.73514 8.11372 8.16714 8.58351 8.99536 9.88444 10.29211 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.024413 B = 0.003435 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.636109 B = 8148.635811 C = 8849.689346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.101 3.899 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.255 1.255 6 H -0.322 1.322 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.553 3.447 10 O -0.611 6.611 11 N -0.633 5.633 12 C 0.108 3.892 13 C 0.088 3.912 14 N -0.605 5.605 15 C 0.521 3.479 16 O -0.545 6.545 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.078 4.078 20 S -0.270 6.270 21 C -0.080 4.080 22 C -0.102 4.102 23 C 0.098 3.902 24 C 0.106 3.894 25 H 0.283 0.717 26 H 0.051 0.949 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 -15.861 -7.813 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.117 4.117 3 Si 0.794 3.206 4 H -0.205 1.205 5 H -0.180 1.180 6 H -0.253 1.253 7 C -0.569 4.569 8 H 0.109 0.891 9 C 0.362 3.638 10 O -0.502 6.502 11 N -0.367 5.367 12 C -0.017 4.017 13 C -0.036 4.036 14 N -0.337 5.337 15 C 0.309 3.691 16 O -0.423 6.423 17 C -0.136 4.136 18 C -0.152 4.152 19 C -0.226 4.226 20 S -0.044 6.044 21 C -0.228 4.228 22 C -0.142 4.142 23 C -0.025 4.025 24 C -0.018 4.018 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.131 0.869 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.103 0.897 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.071 -16.417 -7.572 19.413 hybrid contribution -0.113 1.879 -0.057 1.884 sum 6.958 -14.538 -7.628 17.831 Atomic orbital electron populations 1.69528 1.07874 1.30094 1.38376 1.25752 0.94800 1.02020 0.89136 0.85342 0.78071 0.77263 0.79952 1.20535 1.18049 1.25314 1.20737 0.87973 0.95448 1.52707 0.89129 1.18404 0.88880 0.80250 0.76217 1.90265 1.70795 1.32973 1.56175 1.47686 1.04382 1.10815 1.73847 1.21969 1.00012 0.86525 0.93234 1.22440 0.79169 1.02162 0.99847 1.48118 1.07580 1.10389 1.67661 1.20428 0.87763 0.84120 0.76824 1.90674 1.13891 1.83852 1.53842 1.21341 1.00254 0.94052 0.97969 1.21680 1.00496 0.96459 0.96558 1.23457 1.00061 0.98368 1.00705 1.86939 1.76458 1.17879 1.23164 1.23479 1.02866 0.98327 0.98110 1.21542 0.98094 0.96198 0.98341 1.22073 0.97949 0.84690 0.97765 1.21599 0.83145 1.02616 0.94465 0.90709 0.93046 0.86911 0.90393 0.89493 0.88748 0.89673 0.89890 0.89357 0.87190 0.89661 0.87434 0.90319 0.89505 0.91139 0.88695 0.88436 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.49 13.92 55.55 0.77 -21.72 16 2 C 0.10 2.74 5.52 -17.37 -0.10 2.64 16 3 Si 0.96 24.45 26.08 -169.99 -4.43 20.02 16 4 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.26 -6.82 6.27 56.52 0.35 -6.46 16 6 H -0.32 -7.81 7.11 56.52 0.40 -7.41 16 7 C -0.53 -14.01 9.34 -35.63 -0.33 -14.34 16 8 H 0.09 2.32 6.02 -52.49 -0.32 2.00 16 9 C 0.55 13.81 7.32 -12.99 -0.10 13.72 16 10 O -0.61 -16.88 11.49 5.20 0.06 -16.82 16 11 N -0.63 -12.57 2.94 -173.87 -0.51 -13.09 16 12 C 0.11 1.68 6.54 -3.36 -0.02 1.66 16 13 C 0.09 1.10 6.22 -3.37 -0.02 1.08 16 14 N -0.60 -8.27 2.95 -172.21 -0.51 -8.77 16 15 C 0.52 6.92 6.66 -10.98 -0.07 6.84 16 16 O -0.54 -8.99 15.75 5.56 0.09 -8.90 16 17 C -0.11 -1.11 1.43 -92.20 -0.13 -1.24 16 18 C -0.11 -0.99 4.73 -26.90 -0.13 -1.12 16 19 C -0.08 -0.59 6.45 37.21 0.24 -0.35 16 20 S -0.27 -2.46 22.33 -107.50 -2.40 -4.86 16 21 C -0.08 -0.61 6.45 37.21 0.24 -0.37 16 22 C -0.10 -0.94 4.49 -26.90 -0.12 -1.06 16 23 C 0.10 1.49 6.59 -3.60 -0.02 1.47 16 24 C 0.11 1.86 6.58 -3.60 -0.02 1.83 16 25 H 0.28 7.11 8.29 -40.82 -0.34 6.77 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.11 1.89 5.35 -51.93 -0.28 1.62 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.09 0.81 5.11 -51.93 -0.27 0.54 16 30 H 0.09 0.79 6.40 -51.93 -0.33 0.46 16 31 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 32 H 0.08 0.73 7.64 -51.92 -0.40 0.33 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.41 7.00 -51.93 -0.36 1.05 16 41 H 0.10 1.86 7.02 -51.93 -0.36 1.49 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 336.42 15.07 5.07 5.07 Total: -1.00 -32.04 336.42 -8.59 -40.63 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -6.14 Total: -2.33 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -0.59 Total: 10.76 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -0.25 Total: -43.58 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: 0.15 Total: -25.72 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -4.43 Total: 20.02 kcal Atomic # 16 Polarization: -2.46 SS G_CDS: -2.40 Total: -4.86 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.04 -8.59 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329167713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.525 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds