Wall clock time and date at job start Fri Apr 10 2020 18:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47305 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 119.99674 * 3 2 1 6 6 H 1.48499 * 109.46987 * 239.99642 * 3 2 1 7 7 C 1.37870 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 193.83475 * 7 2 1 9 9 C 1.50700 * 120.00275 * 13.83955 * 7 2 1 10 10 O 1.42897 * 112.94783 * 53.31840 * 9 7 2 11 11 C 1.53951 * 113.73930 * 281.58305 * 9 7 2 12 12 N 1.47585 * 86.11814 * 222.04471 * 11 9 7 13 13 C 1.34771 * 134.49296 * 204.63537 * 12 11 9 14 14 O 1.21279 * 120.00331 * 180.02562 * 13 12 11 15 15 C 1.50707 * 120.00011 * 0.02562 * 13 12 11 16 16 C 1.52999 * 109.47017 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.46955 * 179.97438 * 16 15 13 18 18 O 1.21275 * 120.00103 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99733 * 179.97438 * 17 16 15 20 20 C 1.47148 * 120.98404 * 359.72409 * 19 17 16 21 21 C 1.53717 * 108.16529 * 129.42919 * 20 19 17 22 22 O 1.42962 * 109.14332 * 52.53530 * 21 20 19 23 23 C 1.42964 * 114.17040 * 297.28768 * 22 21 20 24 24 C 1.47151 * 120.97902 * 180.02562 * 19 17 16 25 25 C 1.47584 * 91.01048 * 24.64339 * 12 11 9 26 26 H 0.97007 * 119.99483 * 185.87567 * 1 2 3 27 27 H 0.96698 * 114.00098 * 303.04147 * 10 9 7 28 28 H 1.08994 * 113.76900 * 336.35179 * 11 9 7 29 29 H 1.09010 * 113.76488 * 107.74641 * 11 9 7 30 30 H 1.08992 * 109.46728 * 299.99633 * 15 13 12 31 31 H 1.08994 * 109.46926 * 59.99489 * 15 13 12 32 32 H 1.09002 * 109.47467 * 300.00294 * 16 15 13 33 33 H 1.09004 * 109.46732 * 60.00018 * 16 15 13 34 34 H 1.09004 * 109.68287 * 249.20571 * 20 19 17 35 35 H 1.08997 * 109.68168 * 9.76075 * 20 19 17 36 36 H 1.09001 * 109.65694 * 292.57648 * 21 20 19 37 37 H 1.08997 * 109.48758 * 172.39584 * 21 20 19 38 38 H 1.09003 * 109.51274 * 302.66082 * 23 22 21 39 39 H 1.08996 * 109.55328 * 182.52957 * 23 22 21 40 40 H 1.08992 * 109.68777 * 350.23489 * 24 19 17 41 41 H 1.09001 * 109.68302 * 110.79923 * 24 19 17 42 42 H 1.09003 * 113.76727 * 221.05145 * 25 12 11 43 43 H 1.09000 * 113.86995 * 89.67487 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0610 -1.2075 0.2242 9 6 1.2839 -2.4803 -0.3111 10 8 0.5652 -2.4315 -1.5452 11 6 0.4600 -3.0303 0.8674 12 7 0.9831 -4.3560 0.4838 13 6 0.5567 -5.6237 0.6495 14 8 1.2133 -6.5461 0.2150 15 6 -0.7362 -5.8951 1.3748 16 6 -0.9866 -7.4037 1.4236 17 6 -2.2791 -7.6751 2.1493 18 8 -2.9356 -6.7528 2.5842 19 7 -2.7060 -8.9428 2.3141 20 6 -1.9303 -10.0776 1.7891 21 6 -1.7483 -11.0993 2.9231 22 8 -3.0261 -11.4097 3.4841 23 6 -3.6863 -10.2950 4.0887 24 6 -3.9649 -9.2325 3.0188 25 6 2.1608 -3.7358 -0.1538 26 1 -0.4850 -0.8357 0.0860 27 1 -0.0835 -1.7161 -1.5945 28 1 0.8051 -2.6872 1.8427 29 1 -0.6172 -2.9282 0.7358 30 1 -0.6722 -5.5041 2.3901 31 1 -1.5571 -5.4077 0.8488 32 1 -1.0507 -7.7945 0.4080 33 1 -0.1657 -7.8914 1.9494 34 1 -2.4679 -10.5375 0.9598 35 1 -0.9557 -9.7293 1.4473 36 1 -1.1040 -10.6789 3.6954 37 1 -1.2951 -12.0072 2.5253 38 1 -3.0490 -9.8718 4.8652 39 1 -4.6276 -10.6236 4.5292 40 1 -4.3384 -8.3244 3.4918 41 1 -4.7036 -9.6089 2.3111 42 1 2.4415 -4.1971 -1.1007 43 1 3.0066 -3.5995 0.5201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331868818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:40 Heat of formation + Delta-G solvation = -127.992800 kcal Electronic energy + Delta-G solvation = -26118.312698 eV Core-core repulsion = 22165.042398 eV Total energy + Delta-G solvation = -3953.270299 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66037 -39.71568 -38.64352 -37.62267 -35.07923 -34.30736 -33.03134 -32.39665 -31.67000 -29.05341 -28.15668 -25.85044 -25.50172 -24.64289 -23.91896 -22.17012 -20.31315 -19.33418 -18.54312 -18.11017 -17.43942 -16.85676 -16.42203 -16.30224 -15.88540 -15.60894 -15.45049 -15.33141 -14.92439 -14.65227 -14.24783 -13.98228 -13.82490 -13.55267 -13.05294 -12.98462 -12.56611 -12.40653 -12.33207 -12.06545 -11.84044 -11.78704 -11.58640 -11.18960 -11.15754 -11.13745 -10.93363 -10.60816 -10.56728 -10.22651 -9.98304 -9.55556 -9.34782 -8.93158 -8.84453 -8.44097 -7.92875 -6.69474 -4.49152 2.39777 2.50471 3.05468 3.30053 3.33529 3.36161 3.41440 3.52290 4.21318 4.28917 4.31993 4.53911 4.61339 4.74032 4.78135 4.80001 4.84432 4.97808 5.04341 5.10866 5.17016 5.29709 5.32684 5.36942 5.48645 5.54772 5.68822 5.81629 5.91606 6.03286 6.07340 6.15103 6.33580 6.37414 6.46094 6.62483 6.76639 6.99384 7.64076 7.89555 8.07783 8.30728 8.43356 8.58925 8.82326 9.21322 10.62054 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.031984 B = 0.002495 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.222375 B =11218.797965 C =11715.822010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.037 3.963 3 Si 1.067 2.933 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.618 4.618 8 H 0.065 0.935 9 C 0.216 3.784 10 O -0.566 6.566 11 C 0.069 3.931 12 N -0.631 5.631 13 C 0.529 3.471 14 O -0.568 6.568 15 C -0.118 4.118 16 C -0.120 4.120 17 C 0.519 3.481 18 O -0.535 6.535 19 N -0.621 5.621 20 C 0.070 3.930 21 C 0.047 3.953 22 O -0.381 6.381 23 C 0.048 3.952 24 C 0.076 3.924 25 C 0.123 3.877 26 H 0.268 0.732 27 H 0.375 0.625 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.056 0.944 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.530 -18.061 6.727 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.169 4.169 3 Si 0.894 3.106 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.656 4.656 8 H 0.083 0.917 9 C 0.175 3.825 10 O -0.374 6.374 11 C -0.054 4.054 12 N -0.365 5.365 13 C 0.319 3.681 14 O -0.449 6.449 15 C -0.159 4.159 16 C -0.160 4.160 17 C 0.308 3.692 18 O -0.411 6.411 19 N -0.357 5.357 20 C -0.054 4.054 21 C -0.031 4.031 22 O -0.299 6.299 23 C -0.029 4.029 24 C -0.047 4.047 25 C 0.001 3.999 26 H 0.080 0.920 27 H 0.224 0.776 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.523 -17.295 6.544 19.299 hybrid contribution -0.093 -1.007 0.310 1.058 sum -5.615 -18.302 6.854 20.334 Atomic orbital electron populations 1.70946 1.06985 1.30753 1.44629 1.25988 0.96221 1.03049 0.91689 0.83579 0.75153 0.74972 0.76941 1.20553 1.21119 1.21013 1.22216 0.97804 0.92018 1.53536 0.91671 1.20144 0.88356 0.92964 0.81060 1.86245 1.57063 1.56316 1.37727 1.24504 0.99886 0.78775 1.02226 1.50169 1.25712 1.04617 1.55971 1.20154 0.86985 0.81300 0.79667 1.90622 1.59045 1.42967 1.52295 1.21269 0.96457 0.95517 1.02634 1.21385 0.94671 0.97654 1.02333 1.20872 0.87397 0.81665 0.79265 1.90714 1.57728 1.42898 1.49755 1.48160 1.23773 1.06101 1.57701 1.22599 0.97929 0.87565 0.97259 1.23081 0.85570 0.99330 0.95110 1.87966 1.32483 1.33707 1.75740 1.23008 0.98438 0.87214 0.94274 1.22290 0.86299 1.00439 0.95657 1.23291 0.89529 0.90411 0.96671 0.91965 0.77577 0.89410 0.91489 0.88568 0.88437 0.87993 0.88154 0.90160 0.88029 0.92373 0.87392 0.92531 0.87542 0.87949 0.90658 0.91021 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.63 12.80 55.43 0.71 -22.92 16 2 C 0.04 0.93 5.26 -17.82 -0.09 0.83 16 3 Si 1.07 22.73 29.93 -169.99 -5.09 17.65 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.62 -15.60 8.56 -34.44 -0.29 -15.90 16 8 H 0.07 1.63 7.85 -52.49 -0.41 1.22 16 9 C 0.22 5.07 1.08 -90.84 -0.10 4.97 16 10 O -0.57 -13.92 13.45 -35.23 -0.47 -14.39 16 11 C 0.07 1.45 7.05 -2.97 -0.02 1.43 16 12 N -0.63 -12.99 3.61 -178.27 -0.64 -13.64 16 13 C 0.53 10.17 8.06 -10.98 -0.09 10.08 16 14 O -0.57 -12.01 16.71 5.56 0.09 -11.92 16 15 C -0.12 -1.84 4.74 -27.88 -0.13 -1.97 16 16 C -0.12 -1.52 3.36 -27.89 -0.09 -1.62 16 17 C 0.52 6.72 7.71 -10.99 -0.08 6.64 16 18 O -0.53 -8.74 15.45 5.56 0.09 -8.66 16 19 N -0.62 -6.34 3.01 -172.00 -0.52 -6.86 16 20 C 0.07 0.52 6.57 -3.32 -0.02 0.50 16 21 C 0.05 0.32 7.00 37.53 0.26 0.58 16 22 O -0.38 -3.31 10.74 -35.23 -0.38 -3.69 16 23 C 0.05 0.36 6.99 37.33 0.26 0.62 16 24 C 0.08 0.68 6.64 -3.51 -0.02 0.65 16 25 C 0.12 2.64 8.22 -2.97 -0.02 2.62 16 26 H 0.27 6.88 5.52 -40.82 -0.23 6.66 16 27 H 0.38 9.02 6.95 45.56 0.32 9.34 16 28 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 29 H 0.07 1.38 7.80 -51.92 -0.41 0.97 16 30 H 0.10 1.46 8.10 -51.93 -0.42 1.04 16 31 H 0.10 1.56 8.10 -51.93 -0.42 1.14 16 32 H 0.10 1.24 7.96 -51.93 -0.41 0.82 16 33 H 0.10 1.16 7.63 -51.93 -0.40 0.76 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.69 6.05 -51.93 -0.31 0.38 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.10 1.02 7.08 -51.93 -0.37 0.65 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -31.81 354.49 -6.98 -38.79 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.65 Total: 10.85 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -0.45 Total: 9.44 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.45 Total: -43.42 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -0.67 Total: -38.66 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.09 Total: 17.65 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.81 -6.98 -38.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331868818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.205 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds