Wall clock time and date at job start Fri Apr 10 2020 18:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47305 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 119.99674 * 3 2 1 6 6 H 1.48499 * 109.46987 * 239.99642 * 3 2 1 7 7 C 1.37870 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 193.83475 * 7 2 1 9 9 C 1.50700 * 120.00275 * 13.83955 * 7 2 1 10 10 O 1.42897 * 112.94783 * 53.31840 * 9 7 2 11 11 C 1.53951 * 113.73930 * 281.58305 * 9 7 2 12 12 N 1.47585 * 86.11814 * 222.04471 * 11 9 7 13 13 C 1.34771 * 134.49296 * 204.63537 * 12 11 9 14 14 O 1.21279 * 120.00331 * 180.02562 * 13 12 11 15 15 C 1.50707 * 120.00011 * 0.02562 * 13 12 11 16 16 C 1.52999 * 109.47017 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.46955 * 179.97438 * 16 15 13 18 18 O 1.21275 * 120.00103 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99733 * 179.97438 * 17 16 15 20 20 C 1.47148 * 120.98404 * 359.72409 * 19 17 16 21 21 C 1.53717 * 108.16529 * 129.42919 * 20 19 17 22 22 O 1.42962 * 109.14332 * 52.53530 * 21 20 19 23 23 C 1.42964 * 114.17040 * 297.28768 * 22 21 20 24 24 C 1.47151 * 120.97902 * 180.02562 * 19 17 16 25 25 C 1.47584 * 91.01048 * 24.64339 * 12 11 9 26 26 H 0.97007 * 119.99483 * 185.87567 * 1 2 3 27 27 H 0.96698 * 114.00098 * 303.04147 * 10 9 7 28 28 H 1.08994 * 113.76900 * 336.35179 * 11 9 7 29 29 H 1.09010 * 113.76488 * 107.74641 * 11 9 7 30 30 H 1.08992 * 109.46728 * 299.99633 * 15 13 12 31 31 H 1.08994 * 109.46926 * 59.99489 * 15 13 12 32 32 H 1.09002 * 109.47467 * 300.00294 * 16 15 13 33 33 H 1.09004 * 109.46732 * 60.00018 * 16 15 13 34 34 H 1.09004 * 109.68287 * 249.20571 * 20 19 17 35 35 H 1.08997 * 109.68168 * 9.76075 * 20 19 17 36 36 H 1.09001 * 109.65694 * 292.57648 * 21 20 19 37 37 H 1.08997 * 109.48758 * 172.39584 * 21 20 19 38 38 H 1.09003 * 109.51274 * 302.66082 * 23 22 21 39 39 H 1.08996 * 109.55328 * 182.52957 * 23 22 21 40 40 H 1.08992 * 109.68777 * 350.23489 * 24 19 17 41 41 H 1.09001 * 109.68302 * 110.79923 * 24 19 17 42 42 H 1.09003 * 113.76727 * 221.05145 * 25 12 11 43 43 H 1.09000 * 113.86995 * 89.67487 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0610 -1.2075 0.2242 9 6 1.2839 -2.4803 -0.3111 10 8 0.5652 -2.4315 -1.5452 11 6 0.4600 -3.0303 0.8674 12 7 0.9831 -4.3560 0.4838 13 6 0.5567 -5.6237 0.6495 14 8 1.2133 -6.5461 0.2150 15 6 -0.7362 -5.8951 1.3748 16 6 -0.9866 -7.4037 1.4236 17 6 -2.2791 -7.6751 2.1493 18 8 -2.9356 -6.7528 2.5842 19 7 -2.7060 -8.9428 2.3141 20 6 -1.9303 -10.0776 1.7891 21 6 -1.7483 -11.0993 2.9231 22 8 -3.0261 -11.4097 3.4841 23 6 -3.6863 -10.2950 4.0887 24 6 -3.9649 -9.2325 3.0188 25 6 2.1608 -3.7358 -0.1538 26 1 -0.4850 -0.8357 0.0860 27 1 -0.0835 -1.7161 -1.5945 28 1 0.8051 -2.6872 1.8427 29 1 -0.6172 -2.9282 0.7358 30 1 -0.6722 -5.5041 2.3901 31 1 -1.5571 -5.4077 0.8488 32 1 -1.0507 -7.7945 0.4080 33 1 -0.1657 -7.8914 1.9494 34 1 -2.4679 -10.5375 0.9598 35 1 -0.9557 -9.7293 1.4473 36 1 -1.1040 -10.6789 3.6954 37 1 -1.2951 -12.0072 2.5253 38 1 -3.0490 -9.8718 4.8652 39 1 -4.6276 -10.6236 4.5292 40 1 -4.3384 -8.3244 3.4918 41 1 -4.7036 -9.6089 2.3111 42 1 2.4415 -4.1971 -1.1007 43 1 3.0066 -3.5995 0.5201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331868818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:39 Heat of formation + Delta-G solvation = -151.817995 kcal Electronic energy + Delta-G solvation = -26119.345836 eV Core-core repulsion = 22165.042398 eV Total energy + Delta-G solvation = -3954.303437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.65671 -41.23228 -39.60627 -39.14335 -36.14183 -35.89813 -34.34150 -34.16666 -32.38748 -30.56780 -29.07799 -27.32301 -27.22062 -25.85896 -24.85029 -23.00763 -21.99364 -20.28120 -20.15822 -19.72556 -18.67824 -17.91327 -17.43885 -17.41961 -16.95522 -16.79952 -16.63568 -16.48726 -16.06649 -15.85116 -15.73970 -15.60131 -15.02075 -14.74119 -14.45720 -14.22438 -13.92061 -13.63256 -13.61741 -13.40142 -13.15945 -12.98378 -12.75697 -12.62133 -12.41728 -12.38135 -12.33045 -11.91006 -11.80994 -11.29690 -11.19147 -11.16586 -10.97112 -10.73124 -10.24105 -9.71226 -9.66378 -8.68004 -6.48854 1.40871 1.49833 1.58656 1.61991 1.64952 1.86204 1.92647 2.56042 2.82474 2.90083 3.15776 3.43480 3.64674 3.68726 3.72426 3.89625 3.92550 3.95934 4.06154 4.16549 4.23249 4.31620 4.37363 4.40225 4.50684 4.60918 4.61943 4.64467 4.67267 4.71684 4.73360 4.80747 4.84981 4.88979 4.97183 5.29928 5.73526 6.05768 6.08591 6.13361 6.44757 6.68971 6.90990 6.93992 7.00550 7.27528 8.64748 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.031984 B = 0.002495 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.222375 B =11218.797965 C =11715.822010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.003 4.003 3 Si 1.110 2.890 4 H -0.285 1.285 5 H -0.269 1.269 6 H -0.277 1.277 7 C -0.632 4.632 8 H 0.063 0.937 9 C 0.196 3.804 10 O -0.576 6.576 11 C 0.084 3.916 12 N -0.635 5.635 13 C 0.528 3.472 14 O -0.585 6.585 15 C -0.109 4.109 16 C -0.112 4.112 17 C 0.519 3.481 18 O -0.577 6.577 19 N -0.617 5.617 20 C 0.065 3.935 21 C 0.045 3.955 22 O -0.394 6.394 23 C 0.053 3.947 24 C 0.072 3.928 25 C 0.124 3.876 26 H 0.264 0.736 27 H 0.374 0.626 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.131 0.869 38 H 0.053 0.947 39 H 0.128 0.872 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 -19.314 7.274 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.204 4.204 3 Si 0.933 3.067 4 H -0.211 1.211 5 H -0.194 1.194 6 H -0.202 1.202 7 C -0.669 4.669 8 H 0.081 0.919 9 C 0.156 3.844 10 O -0.384 6.384 11 C -0.039 4.039 12 N -0.368 5.368 13 C 0.319 3.681 14 O -0.467 6.467 15 C -0.149 4.149 16 C -0.152 4.152 17 C 0.309 3.691 18 O -0.456 6.456 19 N -0.352 5.352 20 C -0.057 4.057 21 C -0.032 4.032 22 O -0.312 6.312 23 C -0.025 4.025 24 C -0.050 4.050 25 C 0.001 3.999 26 H 0.076 0.924 27 H 0.223 0.777 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.076 0.924 37 H 0.149 0.851 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.226 -18.617 7.094 20.597 hybrid contribution -0.178 -0.712 0.106 0.742 sum -5.405 -19.329 7.199 21.323 Atomic orbital electron populations 1.71017 1.07640 1.30664 1.46034 1.27115 0.96382 1.05920 0.91021 0.82998 0.74314 0.71639 0.77789 1.21076 1.19430 1.20242 1.22458 0.97887 0.93056 1.53520 0.91870 1.20367 0.89354 0.93313 0.81379 1.86228 1.57161 1.56271 1.38697 1.24240 0.99621 0.78780 1.01290 1.50175 1.25403 1.05040 1.56200 1.20742 0.87724 0.80402 0.79186 1.90608 1.59860 1.43227 1.53040 1.21212 0.93951 0.97721 1.02054 1.21321 0.95196 0.95614 1.03061 1.20846 0.87146 0.82170 0.78977 1.90699 1.58874 1.44330 1.51734 1.48252 1.24165 1.05917 1.56824 1.22835 0.98167 0.86792 0.97896 1.23227 0.85028 1.00124 0.94784 1.87955 1.33217 1.34188 1.75867 1.23048 0.99368 0.86547 0.93491 1.22409 0.85946 1.00406 0.96236 1.23264 0.90082 0.89605 0.96912 0.92439 0.77727 0.89067 0.91295 0.88125 0.88939 0.87210 0.86700 0.89075 0.87147 0.92389 0.85088 0.92834 0.85450 0.89284 0.89760 0.91685 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.29 12.80 21.45 0.27 -48.01 16 2 C 0.00 -0.14 5.26 84.65 0.45 0.31 16 3 Si 1.11 45.15 29.93 68.60 2.05 47.20 16 4 H -0.29 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 6 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.63 -31.69 8.56 25.60 0.22 -31.47 16 8 H 0.06 3.12 7.85 -2.91 -0.02 3.10 16 9 C 0.20 9.21 1.08 -10.88 -0.01 9.20 16 10 O -0.58 -28.54 13.45 -148.98 -2.00 -30.54 16 11 C 0.08 3.50 7.05 86.48 0.61 4.11 16 12 N -0.63 -25.73 3.61 -840.13 -3.03 -28.76 16 13 C 0.53 19.79 8.06 87.66 0.71 20.50 16 14 O -0.59 -24.00 16.71 -3.03 -0.05 -24.05 16 15 C -0.11 -3.30 4.74 29.85 0.14 -3.16 16 16 C -0.11 -2.67 3.36 29.85 0.10 -2.57 16 17 C 0.52 12.96 7.71 87.66 0.68 13.64 16 18 O -0.58 -18.81 15.45 -3.01 -0.05 -18.85 16 19 N -0.62 -11.70 3.01 -816.47 -2.46 -14.16 16 20 C 0.07 0.83 6.57 86.50 0.57 1.40 16 21 C 0.05 0.51 7.00 72.22 0.51 1.02 16 22 O -0.39 -5.97 10.74 -148.98 -1.60 -7.57 16 23 C 0.05 0.70 6.99 72.10 0.50 1.20 16 24 C 0.07 1.21 6.64 86.37 0.57 1.78 16 25 C 0.12 5.26 8.22 86.48 0.71 5.97 16 26 H 0.26 13.67 5.52 -92.70 -0.51 13.15 16 27 H 0.37 18.29 6.95 -74.06 -0.52 17.77 16 28 H 0.09 3.73 8.09 -2.39 -0.02 3.72 16 29 H 0.07 2.83 7.80 -2.38 -0.02 2.82 16 30 H 0.10 2.97 8.10 -2.39 -0.02 2.95 16 31 H 0.09 2.92 8.10 -2.39 -0.02 2.90 16 32 H 0.11 2.46 7.96 -2.39 -0.02 2.44 16 33 H 0.11 2.41 7.63 -2.39 -0.02 2.39 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.11 1.22 6.05 -2.39 -0.01 1.20 16 36 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 37 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 1.75 7.08 -2.39 -0.02 1.73 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 43 H 0.10 4.02 8.09 -2.39 -0.02 4.00 16 Total: -1.00 -66.60 354.49 -0.35 -66.95 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: 0.77 Total: 35.86 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: 5.75 Total: 21.93 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -5.22 Total: -90.93 kcal Atomic # 8 Polarization: -77.31 SS G_CDS: -3.70 Total: -81.02 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.05 Total: 47.20 kcal Total: -66.60 -0.35 -66.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331868818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.868 kcal (2) G-P(sol) polarization free energy of solvation -66.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds