Wall clock time and date at job start Fri Apr 10 2020 18:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30067 * 126.21229 * 2 1 4 4 N 1.28655 * 109.54873 * 179.74502 * 3 2 1 5 5 C 1.31076 * 109.31179 * 0.44512 * 4 3 2 6 6 N 1.38262 * 126.36698 * 179.82125 * 5 4 3 7 7 C 1.47843 * 110.99937 * 313.82487 * 6 5 4 8 8 C 1.54904 * 104.79345 * 146.36723 * 7 6 5 9 9 H 1.08999 * 110.99386 * 81.02054 * 8 7 6 10 10 F 1.39905 * 110.98991 * 204.79627 * 8 7 6 11 11 C 1.55396 * 101.74171 * 323.01409 * 8 7 6 12 12 C 1.47442 * 110.99594 * 74.66853 * 6 5 4 13 13 H 1.08997 * 109.88497 * 117.17520 * 12 6 5 14 14 C 1.52999 * 109.89170 * 356.14143 * 12 6 5 15 15 N 1.46505 * 109.46863 * 174.68542 * 14 12 6 16 16 C 1.46504 * 120.00037 * 276.22435 * 15 14 12 17 17 C 1.34775 * 119.99718 * 96.22697 * 15 14 12 18 18 O 1.21694 * 119.99944 * 0.02562 * 17 15 14 19 19 C 1.46377 * 119.99870 * 179.97438 * 17 15 14 20 20 H 1.08003 * 119.99598 * 0.02562 * 19 17 15 21 21 C 1.40041 * 119.99638 * 179.97438 * 19 17 15 22 22 N 1.30673 * 120.00654 * 0.02562 * 21 19 17 23 23 Si 1.86799 * 119.99728 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47213 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47375 * 120.00097 * 23 21 19 26 26 H 1.48501 * 109.47142 * 240.00245 * 23 21 19 27 27 O 1.34577 * 107.25908 * 359.56348 * 5 4 3 28 28 H 1.09002 * 109.47056 * 269.97256 * 1 2 3 29 29 H 1.08997 * 109.47015 * 29.97788 * 1 2 3 30 30 H 1.09000 * 109.46487 * 149.98067 * 1 2 3 31 31 H 1.09006 * 110.37279 * 265.19067 * 7 6 5 32 32 H 1.09001 * 110.37786 * 27.53267 * 7 6 5 33 33 H 1.08999 * 110.67918 * 277.18109 * 11 8 7 34 34 H 1.09000 * 110.84378 * 153.86446 * 11 8 7 35 35 H 1.09008 * 109.46838 * 54.69213 * 14 12 6 36 36 H 1.08988 * 109.47383 * 294.69145 * 14 12 6 37 37 H 1.08998 * 109.46646 * 95.13684 * 16 15 14 38 38 H 1.09003 * 109.46899 * 215.13160 * 16 15 14 39 39 H 1.08996 * 109.46867 * 335.13521 * 16 15 14 40 40 H 0.97002 * 120.00192 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0494 0.0000 4 7 3.5079 0.6805 0.0054 5 6 3.5685 -0.6288 -0.0006 6 7 4.7186 -1.3963 -0.0010 7 6 5.6925 -0.8908 -0.9918 8 6 7.0794 -1.1656 -0.3590 9 1 7.3800 -2.2020 -0.5119 10 9 8.0438 -0.2871 -0.8644 11 6 6.8022 -0.8855 1.1442 12 6 5.3565 -1.3930 1.3283 13 1 5.3674 -2.4035 1.7367 14 6 4.5930 -0.4594 2.2697 15 7 5.1558 -0.5593 3.6187 16 6 4.7208 -1.6324 4.5162 17 6 6.0735 0.3361 4.0339 18 8 6.4344 1.2278 3.2885 19 6 6.6354 0.2367 5.3819 20 1 6.3148 -0.5545 6.0435 21 6 7.5894 1.1668 5.8131 22 7 7.9777 2.1237 5.0124 23 14 8.3070 1.0395 7.5331 24 1 7.7068 -0.1234 8.2350 25 1 9.7780 0.8576 7.4435 26 1 8.0070 2.2827 8.2879 27 8 2.3032 -1.0871 -0.0003 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3632 -0.8898 -0.5142 31 1 5.5913 -1.4310 -1.9332 32 1 5.5526 0.1786 -1.1501 33 1 6.8656 0.1820 1.3549 34 1 7.4908 -1.4459 1.7766 35 1 3.5417 -0.7466 2.2924 36 1 4.6816 0.5670 1.9141 37 1 5.4174 -2.4680 4.4476 38 1 4.6978 -1.2619 5.5411 39 1 3.7240 -1.9656 4.2277 40 1 8.6382 2.7681 5.3113 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332373840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:44 Heat of formation + Delta-G solvation = -10.790564 kcal Electronic energy + Delta-G solvation = -27317.399710 eV Core-core repulsion = 23278.044127 eV Total energy + Delta-G solvation = -4039.355583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.45298 -44.18762 -39.64392 -37.42428 -36.10015 -34.01068 -33.07479 -32.49519 -30.96253 -30.24329 -27.44046 -26.70339 -25.87364 -24.35468 -23.40745 -22.54809 -21.35846 -20.70813 -19.28868 -17.63296 -17.35995 -16.75332 -16.48708 -16.45028 -15.67051 -15.04349 -14.92385 -14.66008 -14.46151 -14.14909 -13.98450 -13.67713 -13.57728 -13.21845 -13.02621 -12.84853 -12.42593 -12.38592 -11.96924 -11.77462 -11.59911 -11.53429 -11.41613 -11.29852 -11.16294 -10.95538 -10.75478 -10.68232 -10.42441 -10.29640 -10.17600 -9.50424 -9.01637 -8.88974 -7.64786 -7.33927 -6.24279 -4.70554 1.08509 1.83778 2.37516 3.09673 3.18254 3.22003 3.49949 4.00253 4.11560 4.32454 4.38430 4.51656 4.53348 4.67790 4.79393 4.91241 5.02879 5.07213 5.20303 5.22474 5.38380 5.41687 5.53483 5.61027 5.64365 5.70104 5.76280 5.88522 5.96575 6.15097 6.21671 6.33941 6.44681 6.50854 6.69911 6.79189 7.39496 7.48434 8.03345 8.25950 8.33153 8.97151 9.31980 10.50952 10.69555 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.014668 B = 0.004736 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.487446 B = 5910.906014 C = 6976.441563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.153 3.847 3 N -0.276 5.276 4 N -0.289 5.289 5 C 0.342 3.658 6 N -0.442 5.442 7 C 0.028 3.972 8 C 0.084 3.916 9 H 0.103 0.897 10 F -0.198 7.198 11 C -0.154 4.154 12 C 0.068 3.932 13 H 0.102 0.898 14 C 0.111 3.889 15 N -0.643 5.643 16 C 0.103 3.897 17 C 0.555 3.445 18 O -0.567 6.567 19 C -0.542 4.542 20 H 0.072 0.928 21 C 0.088 3.912 22 N -0.762 5.762 23 Si 0.906 3.094 24 H -0.264 1.264 25 H -0.276 1.276 26 H -0.276 1.276 27 O -0.218 6.218 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.040 0.960 36 H 0.100 0.900 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.417 -9.883 -8.980 16.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.058 4.058 3 N -0.124 5.124 4 N -0.141 5.141 5 C 0.043 3.957 6 N -0.171 5.171 7 C -0.098 4.098 8 C 0.047 3.953 9 H 0.120 0.880 10 F -0.179 7.179 11 C -0.193 4.193 12 C -0.039 4.039 13 H 0.120 0.880 14 C -0.015 4.015 15 N -0.382 5.382 16 C -0.042 4.042 17 C 0.361 3.639 18 O -0.449 6.449 19 C -0.578 4.578 20 H 0.090 0.910 21 C -0.133 4.133 22 N -0.391 5.391 23 Si 0.730 3.270 24 H -0.188 1.188 25 H -0.201 1.201 26 H -0.201 1.201 27 O -0.096 6.096 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.059 0.941 36 H 0.118 0.882 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.875 -8.479 -9.542 16.139 hybrid contribution 0.167 -0.830 1.100 1.388 sum -9.708 -9.308 -8.443 15.880 Atomic orbital electron populations 1.20320 0.80101 1.05458 1.05244 1.27874 0.97529 0.79343 1.01102 1.74274 0.96192 1.25529 1.16425 1.75106 1.12122 1.08749 1.18142 1.24830 0.84548 0.87497 0.98872 1.60275 1.00598 1.47419 1.08856 1.23705 0.89392 1.02229 0.94490 1.22643 0.85123 0.92884 0.94646 0.87967 1.92836 1.64796 1.71693 1.88528 1.23577 0.95043 1.07057 0.93585 1.23125 0.93823 1.01867 0.85045 0.87990 1.21742 0.93597 1.00712 0.85463 1.48004 1.46398 1.32352 1.11445 1.21400 0.96897 0.90372 0.95493 1.18312 0.77426 0.79725 0.88423 1.90601 1.62033 1.35317 1.56966 1.21006 1.24389 1.14508 0.97904 0.90969 1.25726 0.95323 0.94031 0.98191 1.70021 1.23484 1.10697 1.34853 0.86343 0.79094 0.78884 0.82640 1.18773 1.20111 1.20145 1.84804 1.17043 1.37769 1.70008 0.88351 0.87545 0.89047 0.88141 0.89436 0.86286 0.88976 0.94136 0.88217 0.94663 0.91127 0.94184 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.38 10.51 36.01 0.38 0.00 16 2 C 0.15 2.04 8.48 -13.03 -0.11 1.93 16 3 N -0.28 -4.72 12.20 32.59 0.40 -4.32 16 4 N -0.29 -5.43 9.68 29.86 0.29 -5.14 16 5 C 0.34 5.72 5.02 -86.87 -0.44 5.28 16 6 N -0.44 -6.86 5.24 -164.53 -0.86 -7.73 16 7 C 0.03 0.40 6.47 -2.30 -0.01 0.39 16 8 C 0.08 1.24 4.85 -24.45 -0.12 1.12 16 9 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 10 F -0.20 -3.37 17.24 2.25 0.04 -3.33 16 11 C -0.15 -2.83 5.60 -24.77 -0.14 -2.97 16 12 C 0.07 1.17 3.63 -66.72 -0.24 0.93 16 13 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 14 C 0.11 2.26 3.63 -4.04 -0.01 2.25 16 15 N -0.64 -14.40 2.77 -183.24 -0.51 -14.91 16 16 C 0.10 1.86 10.04 59.85 0.60 2.46 16 17 C 0.55 15.28 7.11 -12.99 -0.09 15.19 16 18 O -0.57 -17.64 12.60 5.19 0.07 -17.57 16 19 C -0.54 -14.82 8.73 -35.63 -0.31 -15.13 16 20 H 0.07 1.81 6.11 -52.48 -0.32 1.49 16 21 C 0.09 2.39 5.50 -17.37 -0.10 2.30 16 22 N -0.76 -22.44 11.83 55.55 0.66 -21.78 16 23 Si 0.91 19.79 29.56 -169.99 -5.02 14.77 16 24 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 27 O -0.22 -3.26 10.89 3.73 0.04 -3.22 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.42 7.16 -51.93 -0.37 1.05 16 33 H 0.12 2.79 5.86 -51.93 -0.30 2.48 16 34 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 35 H 0.04 0.79 6.89 -51.92 -0.36 0.43 16 36 H 0.10 2.41 5.68 -51.94 -0.30 2.11 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.32 6.40 -51.93 -0.33 0.99 16 39 H 0.04 0.61 7.90 -51.93 -0.41 0.20 16 40 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -35.23 332.33 -5.40 -40.63 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.91 Total: 3.85 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -0.60 Total: 13.74 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.03 Total: -53.88 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.11 Total: -20.79 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.04 Total: -3.33 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.23 -5.40 -40.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332373840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.842 kcal (2) G-P(sol) polarization free energy of solvation -35.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds