Wall clock time and date at job start Fri Apr 10 2020 18:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30067 * 126.21229 * 2 1 4 4 N 1.28655 * 109.54873 * 179.74502 * 3 2 1 5 5 C 1.31076 * 109.31179 * 0.44512 * 4 3 2 6 6 N 1.38262 * 126.36698 * 179.82125 * 5 4 3 7 7 C 1.47843 * 110.99937 * 313.82487 * 6 5 4 8 8 C 1.54904 * 104.79345 * 146.36723 * 7 6 5 9 9 H 1.08999 * 110.99386 * 81.02054 * 8 7 6 10 10 F 1.39905 * 110.98991 * 204.79627 * 8 7 6 11 11 C 1.55396 * 101.74171 * 323.01409 * 8 7 6 12 12 C 1.47442 * 110.99594 * 74.66853 * 6 5 4 13 13 H 1.08997 * 109.88497 * 117.17520 * 12 6 5 14 14 C 1.52999 * 109.89170 * 356.14143 * 12 6 5 15 15 N 1.46505 * 109.46863 * 174.68542 * 14 12 6 16 16 C 1.46504 * 120.00037 * 276.22435 * 15 14 12 17 17 C 1.34775 * 119.99718 * 96.22697 * 15 14 12 18 18 O 1.21694 * 119.99944 * 0.02562 * 17 15 14 19 19 C 1.46377 * 119.99870 * 179.97438 * 17 15 14 20 20 H 1.08003 * 119.99598 * 0.02562 * 19 17 15 21 21 C 1.40041 * 119.99638 * 179.97438 * 19 17 15 22 22 N 1.30673 * 120.00654 * 0.02562 * 21 19 17 23 23 Si 1.86799 * 119.99728 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47213 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47375 * 120.00097 * 23 21 19 26 26 H 1.48501 * 109.47142 * 240.00245 * 23 21 19 27 27 O 1.34577 * 107.25908 * 359.56348 * 5 4 3 28 28 H 1.09002 * 109.47056 * 269.97256 * 1 2 3 29 29 H 1.08997 * 109.47015 * 29.97788 * 1 2 3 30 30 H 1.09000 * 109.46487 * 149.98067 * 1 2 3 31 31 H 1.09006 * 110.37279 * 265.19067 * 7 6 5 32 32 H 1.09001 * 110.37786 * 27.53267 * 7 6 5 33 33 H 1.08999 * 110.67918 * 277.18109 * 11 8 7 34 34 H 1.09000 * 110.84378 * 153.86446 * 11 8 7 35 35 H 1.09008 * 109.46838 * 54.69213 * 14 12 6 36 36 H 1.08988 * 109.47383 * 294.69145 * 14 12 6 37 37 H 1.08998 * 109.46646 * 95.13684 * 16 15 14 38 38 H 1.09003 * 109.46899 * 215.13160 * 16 15 14 39 39 H 1.08996 * 109.46867 * 335.13521 * 16 15 14 40 40 H 0.97002 * 120.00192 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0494 0.0000 4 7 3.5079 0.6805 0.0054 5 6 3.5685 -0.6288 -0.0006 6 7 4.7186 -1.3963 -0.0010 7 6 5.6925 -0.8908 -0.9918 8 6 7.0794 -1.1656 -0.3590 9 1 7.3800 -2.2020 -0.5119 10 9 8.0438 -0.2871 -0.8644 11 6 6.8022 -0.8855 1.1442 12 6 5.3565 -1.3930 1.3283 13 1 5.3674 -2.4035 1.7367 14 6 4.5930 -0.4594 2.2697 15 7 5.1558 -0.5593 3.6187 16 6 4.7208 -1.6324 4.5162 17 6 6.0735 0.3361 4.0339 18 8 6.4344 1.2278 3.2885 19 6 6.6354 0.2367 5.3819 20 1 6.3148 -0.5545 6.0435 21 6 7.5894 1.1668 5.8131 22 7 7.9777 2.1237 5.0124 23 14 8.3070 1.0395 7.5331 24 1 7.7068 -0.1234 8.2350 25 1 9.7780 0.8576 7.4435 26 1 8.0070 2.2827 8.2879 27 8 2.3032 -1.0871 -0.0003 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3632 -0.8898 -0.5142 31 1 5.5913 -1.4310 -1.9332 32 1 5.5526 0.1786 -1.1501 33 1 6.8656 0.1820 1.3549 34 1 7.4908 -1.4459 1.7766 35 1 3.5417 -0.7466 2.2924 36 1 4.6816 0.5670 1.9141 37 1 5.4174 -2.4680 4.4476 38 1 4.6978 -1.2619 5.5411 39 1 3.7240 -1.9656 4.2277 40 1 8.6382 2.7681 5.3113 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332373840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:44 Heat of formation + Delta-G solvation = -41.129973 kcal Electronic energy + Delta-G solvation = -27318.715326 eV Core-core repulsion = 23278.044127 eV Total energy + Delta-G solvation = -4040.671199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.138 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.76652 -45.39485 -41.05873 -39.27192 -37.32264 -35.90008 -34.60586 -34.17960 -32.08336 -31.69729 -28.57483 -28.50500 -27.51323 -26.00091 -24.74316 -23.64777 -22.64394 -22.18791 -21.05789 -18.95478 -18.74141 -18.37592 -17.94294 -17.68469 -17.60941 -16.43544 -16.28535 -16.10994 -15.90990 -15.60787 -15.52248 -15.08349 -14.91882 -14.28499 -14.16864 -13.96491 -13.78644 -13.64013 -13.44159 -13.30352 -13.16358 -13.05045 -13.01969 -12.92884 -12.73803 -12.57936 -12.28359 -12.11634 -11.99177 -11.95724 -11.74320 -10.95681 -10.73953 -10.29664 -9.78519 -9.15338 -8.29421 -6.85554 -0.08270 0.67402 1.16670 1.38503 1.39177 1.56445 2.19902 2.38400 2.43996 2.74404 2.98111 3.11825 3.26614 3.40377 3.49429 3.58663 3.78039 3.85140 3.96369 4.02873 4.14724 4.30534 4.33608 4.44833 4.47016 4.54035 4.57333 4.71029 4.73305 4.79048 4.85867 4.94941 5.00738 5.04330 5.26930 5.34963 5.40542 5.69644 6.09108 6.29344 6.87212 7.12604 7.36241 8.46172 8.66455 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.014668 B = 0.004736 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.487446 B = 5910.906014 C = 6976.441563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.177 3.823 3 N -0.325 5.325 4 N -0.327 5.327 5 C 0.331 3.669 6 N -0.423 5.423 7 C 0.029 3.971 8 C 0.093 3.907 9 H 0.151 0.849 10 F -0.213 7.213 11 C -0.156 4.156 12 C 0.080 3.920 13 H 0.130 0.870 14 C 0.121 3.879 15 N -0.646 5.646 16 C 0.099 3.901 17 C 0.541 3.459 18 O -0.616 6.616 19 C -0.565 4.565 20 H 0.093 0.907 21 C 0.030 3.970 22 N -0.819 5.819 23 Si 0.993 3.007 24 H -0.243 1.243 25 H -0.270 1.270 26 H -0.273 1.273 27 O -0.216 6.216 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.926 -13.099 -8.442 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.034 4.034 3 N -0.172 5.172 4 N -0.179 5.179 5 C 0.031 3.969 6 N -0.153 5.153 7 C -0.097 4.097 8 C 0.056 3.944 9 H 0.168 0.832 10 F -0.194 7.194 11 C -0.195 4.195 12 C -0.028 4.028 13 H 0.148 0.852 14 C -0.005 4.005 15 N -0.383 5.383 16 C -0.044 4.044 17 C 0.347 3.653 18 O -0.502 6.502 19 C -0.601 4.601 20 H 0.111 0.889 21 C -0.185 4.185 22 N -0.449 5.449 23 Si 0.813 3.187 24 H -0.166 1.166 25 H -0.195 1.195 26 H -0.198 1.198 27 O -0.095 6.095 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.160 0.840 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.438 -11.725 -9.016 18.698 hybrid contribution 0.461 0.193 0.882 1.013 sum -10.978 -11.532 -8.134 17.879 Atomic orbital electron populations 1.20797 0.75522 1.07759 1.07073 1.29185 0.99272 0.78072 0.96869 1.74214 0.96142 1.27345 1.19456 1.75041 1.13518 1.10245 1.19048 1.24893 0.85383 0.87186 0.99488 1.60514 1.00303 1.46586 1.07896 1.23832 0.88734 1.01320 0.95790 1.22872 0.85201 0.94634 0.91675 0.83209 1.92806 1.65485 1.72651 1.88469 1.23391 0.96249 1.03228 0.96621 1.22971 0.92382 1.01909 0.85495 0.85225 1.21619 0.94478 0.99252 0.85102 1.47843 1.45240 1.32408 1.12836 1.21608 0.99135 0.89380 0.94245 1.18644 0.78096 0.79953 0.88563 1.90575 1.63894 1.37588 1.58164 1.21521 1.24859 1.15393 0.98334 0.88858 1.26953 0.95316 0.93039 1.03212 1.70209 1.24674 1.12135 1.37863 0.85038 0.78172 0.79503 0.76036 1.16614 1.19453 1.19782 1.84830 1.16352 1.38086 1.70185 0.86418 0.85961 0.85936 0.84012 0.92224 0.92122 0.89375 0.93071 0.92700 0.92665 0.91840 0.90915 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.60 10.51 71.24 0.75 0.15 16 2 C 0.18 4.50 8.48 88.37 0.75 5.25 16 3 N -0.32 -11.34 12.20 -165.26 -2.02 -13.36 16 4 N -0.33 -12.82 9.68 -173.50 -1.68 -14.50 16 5 C 0.33 11.00 5.02 179.04 0.90 11.90 16 6 N -0.42 -12.69 5.24 -784.65 -4.12 -16.81 16 7 C 0.03 0.81 6.47 86.77 0.56 1.37 16 8 C 0.09 2.66 4.85 32.07 0.16 2.82 16 9 H 0.15 2.97 8.14 -2.39 -0.02 2.95 16 10 F -0.21 -7.39 17.24 44.97 0.78 -6.61 16 11 C -0.16 -5.92 5.60 31.87 0.18 -5.74 16 12 C 0.08 2.69 3.63 45.26 0.16 2.86 16 13 H 0.13 3.72 8.14 -2.39 -0.02 3.70 16 14 C 0.12 5.05 3.63 86.38 0.31 5.36 16 15 N -0.65 -29.29 2.77 -851.87 -2.36 -31.65 16 16 C 0.10 3.40 10.04 127.77 1.28 4.69 16 17 C 0.54 31.05 7.11 86.36 0.61 31.66 16 18 O -0.62 -41.05 12.60 -4.33 -0.05 -41.10 16 19 C -0.56 -31.40 8.73 24.83 0.22 -31.18 16 20 H 0.09 4.61 6.11 -2.91 -0.02 4.59 16 21 C 0.03 1.67 5.50 85.30 0.47 2.14 16 22 N -0.82 -50.44 11.83 21.83 0.26 -50.18 16 23 Si 0.99 40.78 29.56 68.60 2.03 42.81 16 24 H -0.24 -9.09 7.11 99.48 0.71 -8.38 16 25 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 27 O -0.22 -6.11 10.89 -9.58 -0.10 -6.21 16 28 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.14 2.79 8.14 -2.38 -0.02 2.77 16 32 H 0.06 2.02 7.16 -2.39 -0.02 2.00 16 33 H 0.06 3.08 5.86 -2.39 -0.01 3.07 16 34 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.05 1.98 6.89 -2.38 -0.02 1.96 16 36 H 0.05 2.83 5.68 -2.39 -0.01 2.82 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 2.27 6.40 -2.39 -0.02 2.25 16 39 H 0.07 2.01 7.90 -2.39 -0.02 2.00 16 40 H 0.27 15.30 8.29 -92.71 -0.77 14.53 16 Total: -1.00 -84.91 332.33 0.17 -84.74 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 1.08 Total: 21.60 kcal Atomic # 6 Polarization: 24.92 SS G_CDS: 6.35 Total: 31.28 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -9.91 Total: -126.50 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -0.16 Total: -47.31 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 0.78 Total: -6.61 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -84.91 0.17 -84.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332373840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.611 kcal (2) G-P(sol) polarization free energy of solvation -84.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds