Wall clock time and date at job start Fri Apr 10 2020 18:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86797 * 120.00074 * 2 1 4 4 H 1.48503 * 109.47286 * 239.99652 * 3 2 1 5 5 H 1.48496 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47457 * 119.99599 * 3 2 1 7 7 C 1.40056 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99750 * 180.27807 * 7 2 1 9 9 C 1.46377 * 119.99786 * 0.02562 * 7 2 1 10 10 O 1.21687 * 119.99940 * 354.97957 * 9 7 2 11 11 N 1.34774 * 119.99807 * 174.97298 * 9 7 2 12 12 C 1.46969 * 120.59244 * 4.95339 * 11 9 7 13 13 C 1.53819 * 108.39512 * 124.75863 * 12 11 9 14 14 N 1.46959 * 108.58191 * 49.63458 * 13 12 11 15 15 C 1.34779 * 120.59651 * 124.66786 * 14 13 12 16 16 O 1.21274 * 120.00391 * 185.37637 * 15 14 13 17 17 C 1.50701 * 119.99716 * 5.37557 * 15 14 13 18 18 H 1.09001 * 109.57650 * 25.21791 * 17 15 14 19 19 C 1.53088 * 109.57544 * 145.47826 * 17 15 14 20 20 C 1.52584 * 109.95815 * 182.83263 * 19 17 15 21 21 C 1.52589 * 110.72393 * 289.32622 * 20 19 17 22 22 C 1.53098 * 109.95473 * 70.67422 * 21 20 19 23 23 S 1.81748 * 109.57593 * 264.96563 * 17 15 14 24 24 C 1.46965 * 118.81286 * 304.64966 * 14 13 12 25 25 C 1.46959 * 120.59287 * 185.23073 * 11 9 7 26 26 H 0.97004 * 120.00134 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.61037 * 244.53576 * 12 11 9 28 28 H 1.08998 * 109.61288 * 5.05346 * 12 11 9 29 29 H 1.09003 * 109.74119 * 289.84801 * 13 12 11 30 30 H 1.08997 * 109.67411 * 169.38427 * 13 12 11 31 31 H 1.09001 * 109.39432 * 302.97764 * 19 17 15 32 32 H 1.08999 * 109.39195 * 62.78371 * 19 17 15 33 33 H 1.09001 * 109.22530 * 49.64066 * 20 19 17 34 34 H 1.08992 * 109.23203 * 169.00403 * 20 19 17 35 35 H 1.08996 * 109.38514 * 190.82153 * 21 20 19 36 36 H 1.08997 * 109.38968 * 310.62531 * 21 20 19 37 37 H 1.08993 * 109.58145 * 56.78248 * 22 21 20 38 38 H 1.09005 * 109.57070 * 177.04043 * 22 21 20 39 39 H 1.09002 * 109.61122 * 295.47844 * 24 14 13 40 40 H 1.09002 * 109.75294 * 175.05310 * 24 14 13 41 41 H 1.08999 * 109.60945 * 354.95337 * 25 11 9 42 42 H 1.09003 * 109.60689 * 115.46213 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0943 1.6965 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2128 0.0051 9 6 1.2750 -2.4805 0.0005 10 8 0.0616 -2.4825 0.0923 11 7 1.9450 -3.6455 -0.1012 12 6 3.4146 -3.6654 -0.1038 13 6 3.8893 -4.6048 1.0179 14 7 3.1635 -5.8774 0.9014 15 6 3.8335 -7.0424 0.7996 16 8 3.2281 -8.0753 0.6063 17 6 5.3351 -7.0616 0.9262 18 1 5.6630 -6.2048 1.5148 19 6 5.7753 -8.3559 1.6150 20 6 7.2885 -8.3530 1.8108 21 6 8.0063 -8.5133 0.4739 22 6 7.8491 -7.2388 -0.3596 23 16 6.0865 -6.9878 -0.7271 24 6 1.6940 -5.8569 0.8983 25 6 1.2193 -4.9181 -0.2177 26 1 -0.4850 0.8401 -0.0004 27 1 3.7738 -4.0297 -1.0662 28 1 3.7944 -2.6593 0.0743 29 1 3.6827 -4.1534 1.9883 30 1 4.9598 -4.7838 0.9181 31 1 5.2851 -8.4343 2.5854 32 1 5.4935 -9.2086 0.9972 33 1 7.5893 -7.4108 2.2690 34 1 7.5670 -9.1762 2.4686 35 1 9.0652 -8.7009 0.6520 36 1 7.5760 -9.3546 -0.0693 37 1 8.2279 -6.3854 0.2027 38 1 8.4075 -7.3399 -1.2903 39 1 1.3311 -5.4947 1.8602 40 1 1.3120 -6.8618 0.7182 41 1 0.1489 -4.7395 -0.1149 42 1 1.4258 -5.3695 -1.1881 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336198811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:53 Heat of formation + Delta-G solvation = -65.518900 kcal Electronic energy + Delta-G solvation = -24418.618672 eV Core-core repulsion = 20910.810315 eV Total energy + Delta-G solvation = -3507.808357 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.14860 -38.08384 -36.84957 -35.84507 -33.16414 -32.49857 -32.15144 -30.84903 -28.14588 -27.24890 -25.95641 -24.03677 -23.10283 -21.94406 -21.05256 -19.92774 -18.61831 -17.46922 -17.13806 -16.18287 -15.98710 -15.62618 -15.23517 -15.01546 -14.52735 -14.50923 -14.19209 -14.06922 -13.95643 -13.62782 -13.39645 -13.19501 -12.62957 -12.52265 -12.05900 -11.89993 -11.66034 -11.64014 -11.42048 -11.27178 -11.15255 -11.04151 -10.98829 -10.85840 -10.75465 -10.28851 -10.11110 -9.98927 -9.62575 -8.93384 -8.67174 -7.87726 -7.66469 -7.26088 -6.25932 -4.71971 1.17109 2.18989 2.92220 3.01591 3.11196 3.16822 3.18107 4.02708 4.25671 4.28036 4.42744 4.45629 4.50206 4.52752 4.72782 4.81060 5.02312 5.21218 5.24464 5.30320 5.33767 5.48054 5.52332 5.56688 5.61234 5.62949 5.65077 5.74395 5.90684 5.93568 5.97075 6.04101 6.28856 6.37963 6.53414 6.69199 7.38382 7.46037 7.50144 8.03691 8.16808 8.25931 8.95322 9.34043 10.50273 10.68670 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.003567 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.096439 B = 7847.349206 C = 8722.948128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.575 6.575 11 N -0.643 5.643 12 C 0.112 3.888 13 C 0.087 3.913 14 N -0.596 5.596 15 C 0.534 3.466 16 O -0.534 6.534 17 C -0.082 4.082 18 H 0.108 0.892 19 C -0.105 4.105 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.090 4.090 23 S -0.213 6.213 24 C 0.100 3.900 25 C 0.108 3.892 26 H 0.270 0.730 27 H 0.052 0.948 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.392 -12.693 3.267 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.366 3.634 10 O -0.458 6.458 11 N -0.381 5.381 12 C -0.014 4.014 13 C -0.037 4.037 14 N -0.329 5.329 15 C 0.320 3.680 16 O -0.412 6.412 17 C -0.214 4.214 18 H 0.126 0.874 19 C -0.144 4.144 20 C -0.166 4.166 21 C -0.162 4.162 22 C -0.238 4.238 23 S 0.014 5.986 24 C -0.023 4.023 25 C -0.017 4.017 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.685 -12.928 2.213 20.446 hybrid contribution 1.226 0.777 1.165 1.861 sum 16.911 -12.151 3.378 21.096 Atomic orbital electron populations 1.69993 1.07103 1.27543 1.34864 1.25726 0.94619 1.00324 0.92549 0.86443 0.79867 0.81059 0.79481 1.19195 1.20538 1.19220 1.20915 0.93488 0.89190 1.54577 0.90912 1.18277 0.86943 0.82110 0.76111 1.90598 1.14347 1.85923 1.54919 1.48186 1.04430 1.05860 1.79647 1.21860 0.83207 1.00235 0.96069 1.22488 0.96089 0.84033 1.01114 1.48034 1.07524 1.06084 1.71288 1.19593 0.87770 0.83660 0.77015 1.90674 1.69227 1.32273 1.48980 1.23434 0.96143 1.03441 0.98360 0.87369 1.21601 0.95557 0.95905 1.01375 1.21546 0.94607 1.02912 0.97544 1.21735 1.01248 0.97263 0.95932 1.23558 0.94828 1.01103 1.04357 1.87352 1.05315 1.95488 1.10492 1.22126 0.78339 1.01486 1.00396 1.21500 0.99209 0.85095 0.95893 0.91935 0.93002 0.87606 0.90765 0.89648 0.90614 0.89385 0.91629 0.90630 0.90713 0.90379 0.89621 0.87432 0.91129 0.88919 0.88501 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.44 11.84 55.55 0.66 -21.78 16 2 C 0.09 2.37 5.50 -17.37 -0.10 2.28 16 3 Si 0.91 19.36 29.56 -169.99 -5.02 14.34 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.55 -14.65 8.87 -35.63 -0.32 -14.97 16 8 H 0.07 1.74 5.66 -52.49 -0.30 1.45 16 9 C 0.56 15.42 7.62 -12.99 -0.10 15.32 16 10 O -0.58 -18.18 14.45 5.20 0.08 -18.11 16 11 N -0.64 -14.19 2.94 -173.87 -0.51 -14.71 16 12 C 0.11 1.97 6.51 -3.36 -0.02 1.95 16 13 C 0.09 1.24 6.36 -3.37 -0.02 1.22 16 14 N -0.60 -9.34 2.95 -172.21 -0.51 -9.85 16 15 C 0.53 8.17 6.71 -10.98 -0.07 8.10 16 16 O -0.53 -9.73 15.75 5.56 0.09 -9.64 16 17 C -0.08 -0.95 2.08 -27.84 -0.06 -1.01 16 18 H 0.11 1.08 6.16 -51.93 -0.32 0.76 16 19 C -0.11 -1.04 4.65 -26.90 -0.13 -1.17 16 20 C -0.13 -0.91 5.61 -27.15 -0.15 -1.06 16 21 C -0.12 -0.82 5.76 -26.89 -0.15 -0.98 16 22 C -0.09 -0.69 6.45 37.21 0.24 -0.45 16 23 S -0.21 -2.50 21.69 -107.50 -2.33 -4.83 16 24 C 0.10 1.69 6.59 -3.60 -0.02 1.67 16 25 C 0.11 2.14 6.60 -3.60 -0.02 2.12 16 26 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.11 1.88 5.34 -51.93 -0.28 1.61 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.09 0.98 5.55 -51.93 -0.29 0.70 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.01 7.86 -51.93 -0.41 0.60 16 33 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.09 1.54 7.00 -51.93 -0.36 1.17 16 41 H 0.10 2.10 6.99 -51.93 -0.36 1.74 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -34.55 342.06 -9.42 -43.97 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.09 Total: 2.43 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: -0.93 Total: 13.02 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.36 Total: -46.33 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: 0.16 Total: -27.75 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -2.33 Total: -4.83 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.55 -9.42 -43.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336198811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.546 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds