Wall clock time and date at job start Fri Apr 10 2020 18:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 120.00275 * 2 1 4 4 H 1.48501 * 109.47120 * 269.99805 * 3 2 1 5 5 H 1.48502 * 109.46920 * 29.99949 * 3 2 1 6 6 H 1.48497 * 109.46903 * 149.99869 * 3 2 1 7 7 C 1.38799 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00083 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00343 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00324 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47245 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00054 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00364 * 180.02562 * 11 10 9 14 14 C 1.47074 * 120.88785 * 180.02562 * 13 11 10 15 15 C 1.53232 * 108.52620 * 231.20811 * 14 13 11 16 16 N 1.46906 * 109.33893 * 306.17015 * 15 14 13 17 17 C 1.46901 * 110.99853 * 187.25322 * 16 15 14 18 18 C 1.50701 * 109.46921 * 169.99766 * 17 16 15 19 19 O 1.20758 * 120.00087 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.99940 * 179.97438 * 18 17 16 21 21 C 1.52994 * 117.50105 * 223.74808 * 20 18 17 22 22 C 1.53003 * 117.49908 * 155.08626 * 20 18 17 23 23 C 1.46901 * 111.26879 * 63.10413 * 16 15 14 24 24 C 1.47085 * 120.87831 * 0.02562 * 13 11 10 25 25 H 0.97004 * 119.99754 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46939 * 60.00134 * 10 9 7 27 27 H 1.08993 * 109.46840 * 300.00397 * 10 9 7 28 28 H 1.09008 * 109.63018 * 111.49044 * 14 13 11 29 29 H 1.09004 * 109.78798 * 351.01377 * 14 13 11 30 30 H 1.09005 * 109.49978 * 186.20928 * 15 14 13 31 31 H 1.09002 * 109.51399 * 66.14029 * 15 14 13 32 32 H 1.09002 * 109.47401 * 49.99794 * 17 16 15 33 33 H 1.09001 * 109.46874 * 289.99807 * 17 16 15 34 34 H 1.09004 * 115.54764 * 9.42174 * 20 18 17 35 35 H 1.09003 * 117.49857 * 0.02562 * 21 20 18 36 36 H 1.09004 * 117.49915 * 145.02209 * 21 20 18 37 37 H 1.08992 * 117.49994 * 214.98329 * 22 20 18 38 38 H 1.09003 * 117.49575 * 0.02562 * 22 20 18 39 39 H 1.08991 * 109.49343 * 56.85123 * 23 16 15 40 40 H 1.09000 * 109.49162 * 176.93632 * 23 16 15 41 41 H 1.08995 * 109.62730 * 248.50606 * 24 13 11 42 42 H 1.09003 * 109.62861 * 8.88821 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0013 11 6 1.9872 -5.3027 -0.0018 12 8 0.7909 -5.5023 -0.0028 13 7 2.8438 -6.3432 -0.0009 14 6 2.3493 -7.7283 -0.0019 15 6 3.0415 -8.4932 1.1313 16 7 4.4974 -8.3533 0.9942 17 6 5.2015 -9.2106 1.9572 18 6 6.6724 -9.2312 1.6296 19 8 7.0909 -8.5968 0.6911 20 6 7.6211 -10.0425 2.4739 21 6 8.9494 -9.3928 2.8665 22 6 8.9233 -10.5109 1.8214 23 6 4.9137 -6.9515 1.1346 24 6 4.2982 -6.1236 0.0009 25 1 -0.4850 0.8401 -0.0004 26 1 3.1236 -3.7319 0.8892 27 1 3.1250 -3.7310 -0.8907 28 1 2.5816 -8.1994 -0.9570 29 1 1.2710 -7.7353 0.1570 30 1 2.7706 -9.5476 1.0770 31 1 2.7257 -8.0855 2.0916 32 1 4.8027 -10.2235 1.9015 33 1 5.0590 -8.8188 2.9643 34 1 7.1530 -10.7089 3.1985 35 1 9.1370 -8.3784 2.5146 36 1 9.3556 -9.6321 3.8494 37 1 9.3122 -11.4852 2.1170 38 1 9.0940 -10.2319 0.7816 39 1 4.5718 -6.5650 2.0946 40 1 6.0006 -6.8879 1.0826 41 1 4.7176 -6.4406 -0.9538 42 1 4.5086 -5.0660 0.1601 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346096311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:25 Heat of formation + Delta-G solvation = -26.251942 kcal Electronic energy + Delta-G solvation = -23259.692617 eV Core-core repulsion = 19753.587003 eV Total energy + Delta-G solvation = -3506.105614 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.58842 -39.64530 -37.73238 -36.40875 -34.48273 -32.41705 -31.60978 -30.06047 -28.81000 -26.19513 -25.44767 -23.79825 -23.42847 -22.92332 -21.29684 -19.65681 -18.97777 -17.70009 -17.15842 -16.83573 -15.88820 -15.83648 -15.49817 -15.38348 -15.15705 -14.79304 -14.68435 -14.59886 -13.98891 -13.88370 -13.31588 -13.11885 -12.99114 -12.63909 -12.42972 -12.17586 -12.02406 -11.83370 -11.44264 -11.39855 -11.34869 -11.12952 -11.05157 -11.00798 -10.94311 -10.74426 -9.88941 -9.79049 -9.33309 -9.05508 -8.80110 -8.37999 -8.21190 -6.48835 -6.20437 -3.90906 1.50738 2.91438 3.06383 3.19374 3.23372 3.28176 3.31753 3.35857 3.61634 3.78614 4.21507 4.27118 4.40093 4.53848 4.63036 4.74995 4.80006 4.87356 4.94752 5.04176 5.12124 5.12932 5.14623 5.22883 5.29653 5.34755 5.36419 5.47592 5.55911 5.61008 5.63098 5.76268 5.82604 5.89307 5.98153 6.13838 6.54436 6.63411 6.72684 7.24029 7.59708 7.61546 8.36469 8.58153 9.24824 10.86992 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.020345 B = 0.002659 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.933860 B =10527.755746 C =11641.875438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.150 4.150 11 C 0.535 3.465 12 O -0.519 6.519 13 N -0.622 5.622 14 C 0.119 3.881 15 C 0.042 3.958 16 N -0.527 5.527 17 C 0.010 3.990 18 C 0.383 3.617 19 O -0.433 6.433 20 C -0.223 4.223 21 C -0.150 4.150 22 C -0.151 4.151 23 C 0.036 3.964 24 C 0.117 3.883 25 H 0.268 0.732 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.038 0.962 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.415 -22.916 6.364 28.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.301 4.301 11 C 0.324 3.676 12 O -0.393 6.393 13 N -0.359 5.359 14 C -0.004 4.004 15 C -0.086 4.086 16 N -0.252 5.252 17 C -0.118 4.118 18 C 0.257 3.743 19 O -0.305 6.305 20 C -0.242 4.242 21 C -0.187 4.187 22 C -0.188 4.188 23 C -0.092 4.092 24 C -0.007 4.007 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.142 0.858 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.056 0.944 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.795 -22.891 5.380 27.782 hybrid contribution 1.751 1.352 1.008 2.431 sum 16.546 -21.539 6.388 27.901 Atomic orbital electron populations 1.70022 1.05947 1.27424 1.46907 1.24994 0.95033 0.99023 0.94560 0.86166 0.79399 0.81560 0.78368 1.20249 1.20766 1.19698 1.22860 0.94891 0.91628 1.58885 0.90949 1.85387 1.05038 0.96339 1.96694 1.23547 1.06448 0.95404 1.04689 1.20332 0.86178 0.86193 0.74943 1.90684 1.15154 1.85245 1.48222 1.48181 1.06498 1.05770 1.75477 1.21567 0.99770 0.80967 0.98101 1.22548 0.86647 1.00963 0.98437 1.61768 1.05666 1.07748 1.50023 1.22451 0.93487 1.00156 0.95732 1.23696 0.90275 0.77905 0.82439 1.90384 1.79542 1.35202 1.25357 1.22833 0.90936 1.05483 1.04972 1.22967 0.96371 0.98970 1.00439 1.22972 0.97067 0.99335 0.99421 1.22658 1.01699 0.87129 0.97717 1.21763 0.79619 1.00342 0.98978 0.92202 0.89388 0.89195 0.91057 0.88454 0.89518 0.94013 0.87209 0.91241 0.85787 0.87994 0.87748 0.87855 0.87695 0.94405 0.88506 0.90556 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 8 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.15 4.52 36.00 0.16 -2.99 16 11 C 0.54 10.58 7.73 -10.99 -0.08 10.49 16 12 O -0.52 -12.11 15.32 5.56 0.09 -12.02 16 13 N -0.62 -9.50 3.01 -172.44 -0.52 -10.02 16 14 C 0.12 1.52 6.59 -3.61 -0.02 1.50 16 15 C 0.04 0.42 5.62 -3.70 -0.02 0.40 16 16 N -0.53 -5.36 4.37 -235.73 -1.03 -6.39 16 17 C 0.01 0.07 5.39 -4.97 -0.03 0.05 16 18 C 0.38 3.15 6.58 -29.04 -0.19 2.96 16 19 O -0.43 -5.03 14.41 6.00 0.09 -4.95 16 20 C -0.22 -1.28 6.12 -91.77 -0.56 -1.84 16 21 C -0.15 -0.83 10.14 -26.70 -0.27 -1.10 16 22 C -0.15 -0.85 10.05 -26.69 -0.27 -1.12 16 23 C 0.04 0.41 5.26 -3.68 -0.02 0.39 16 24 C 0.12 1.49 6.51 -3.58 -0.02 1.46 16 25 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.09 1.71 7.66 -51.92 -0.40 1.31 16 27 H 0.09 1.76 8.00 -51.92 -0.42 1.35 16 28 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.10 1.36 7.07 -51.93 -0.37 0.99 16 30 H 0.09 0.66 7.99 -51.93 -0.41 0.24 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.11 0.57 7.97 -51.93 -0.41 0.16 16 33 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.73 7.89 -51.93 -0.41 0.32 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.10 1.09 5.77 -51.93 -0.30 0.79 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 1.17 6.02 -51.93 -0.31 0.85 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -35.69 359.01 -9.98 -45.67 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -6.38 Total: -1.84 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.13 Total: -2.87 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.82 Total: -42.05 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.17 Total: -16.97 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.69 -9.98 -45.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346096311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.414 kcal (2) G-P(sol) polarization free energy of solvation -35.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds