Wall clock time and date at job start Fri Apr 10 2020 18:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 120.00275 * 2 1 4 4 H 1.48501 * 109.47120 * 269.99805 * 3 2 1 5 5 H 1.48502 * 109.46920 * 29.99949 * 3 2 1 6 6 H 1.48497 * 109.46903 * 149.99869 * 3 2 1 7 7 C 1.38799 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00083 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00343 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00324 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47245 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00054 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00364 * 180.02562 * 11 10 9 14 14 C 1.47074 * 120.88785 * 180.02562 * 13 11 10 15 15 C 1.53232 * 108.52620 * 231.20811 * 14 13 11 16 16 N 1.46906 * 109.33893 * 306.17015 * 15 14 13 17 17 C 1.46901 * 110.99853 * 187.25322 * 16 15 14 18 18 C 1.50701 * 109.46921 * 169.99766 * 17 16 15 19 19 O 1.20758 * 120.00087 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.99940 * 179.97438 * 18 17 16 21 21 C 1.52994 * 117.50105 * 223.74808 * 20 18 17 22 22 C 1.53003 * 117.49908 * 155.08626 * 20 18 17 23 23 C 1.46901 * 111.26879 * 63.10413 * 16 15 14 24 24 C 1.47085 * 120.87831 * 0.02562 * 13 11 10 25 25 H 0.97004 * 119.99754 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46939 * 60.00134 * 10 9 7 27 27 H 1.08993 * 109.46840 * 300.00397 * 10 9 7 28 28 H 1.09008 * 109.63018 * 111.49044 * 14 13 11 29 29 H 1.09004 * 109.78798 * 351.01377 * 14 13 11 30 30 H 1.09005 * 109.49978 * 186.20928 * 15 14 13 31 31 H 1.09002 * 109.51399 * 66.14029 * 15 14 13 32 32 H 1.09002 * 109.47401 * 49.99794 * 17 16 15 33 33 H 1.09001 * 109.46874 * 289.99807 * 17 16 15 34 34 H 1.09004 * 115.54764 * 9.42174 * 20 18 17 35 35 H 1.09003 * 117.49857 * 0.02562 * 21 20 18 36 36 H 1.09004 * 117.49915 * 145.02209 * 21 20 18 37 37 H 1.08992 * 117.49994 * 214.98329 * 22 20 18 38 38 H 1.09003 * 117.49575 * 0.02562 * 22 20 18 39 39 H 1.08991 * 109.49343 * 56.85123 * 23 16 15 40 40 H 1.09000 * 109.49162 * 176.93632 * 23 16 15 41 41 H 1.08995 * 109.62730 * 248.50606 * 24 13 11 42 42 H 1.09003 * 109.62861 * 8.88821 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0013 11 6 1.9872 -5.3027 -0.0018 12 8 0.7909 -5.5023 -0.0028 13 7 2.8438 -6.3432 -0.0009 14 6 2.3493 -7.7283 -0.0019 15 6 3.0415 -8.4932 1.1313 16 7 4.4974 -8.3533 0.9942 17 6 5.2015 -9.2106 1.9572 18 6 6.6724 -9.2312 1.6296 19 8 7.0909 -8.5968 0.6911 20 6 7.6211 -10.0425 2.4739 21 6 8.9494 -9.3928 2.8665 22 6 8.9233 -10.5109 1.8214 23 6 4.9137 -6.9515 1.1346 24 6 4.2982 -6.1236 0.0009 25 1 -0.4850 0.8401 -0.0004 26 1 3.1236 -3.7319 0.8892 27 1 3.1250 -3.7310 -0.8907 28 1 2.5816 -8.1994 -0.9570 29 1 1.2710 -7.7353 0.1570 30 1 2.7706 -9.5476 1.0770 31 1 2.7257 -8.0855 2.0916 32 1 4.8027 -10.2235 1.9015 33 1 5.0590 -8.8188 2.9643 34 1 7.1530 -10.7089 3.1985 35 1 9.1370 -8.3784 2.5146 36 1 9.3556 -9.6321 3.8494 37 1 9.3122 -11.4852 2.1170 38 1 9.0940 -10.2319 0.7816 39 1 4.5718 -6.5650 2.0946 40 1 6.0006 -6.8879 1.0826 41 1 4.7176 -6.4406 -0.9538 42 1 4.5086 -5.0660 0.1601 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346096311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:24 Heat of formation + Delta-G solvation = -50.490092 kcal Electronic energy + Delta-G solvation = -23260.743662 eV Core-core repulsion = 19753.587003 eV Total energy + Delta-G solvation = -3507.156659 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.45110 -40.74664 -38.81916 -36.97849 -35.62652 -34.60138 -32.68072 -31.16109 -30.03493 -27.72825 -27.04709 -24.78594 -24.10209 -23.32972 -22.38310 -20.38497 -20.21184 -19.52619 -18.27679 -17.73590 -17.03122 -16.88979 -16.80764 -16.62927 -16.38191 -15.98278 -15.71777 -15.49151 -15.30657 -14.85695 -14.63447 -14.49131 -14.34847 -13.55419 -13.48037 -13.31748 -13.18802 -12.93645 -12.90401 -12.64216 -12.45334 -12.41970 -12.32087 -12.22050 -11.73129 -11.53436 -11.41694 -11.15814 -10.93219 -10.55432 -10.29953 -9.85077 -9.35211 -8.69710 -8.36143 -6.14896 0.92016 1.22627 1.41596 1.43629 1.51377 1.55110 2.02467 2.25679 2.54708 2.93023 2.97874 3.12352 3.21835 3.59814 3.82171 3.85634 3.93410 3.99020 4.07892 4.13552 4.18813 4.23055 4.25763 4.37154 4.40966 4.46811 4.49372 4.58273 4.71327 4.73978 4.75510 4.79412 4.97124 4.99310 5.07067 5.20326 5.40061 5.43896 5.83342 5.89321 6.18160 6.24067 6.65479 7.04843 7.07464 8.73169 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.020345 B = 0.002659 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.933860 B =10527.755746 C =11641.875438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.125 4.125 11 C 0.534 3.466 12 O -0.564 6.564 13 N -0.610 5.610 14 C 0.113 3.887 15 C 0.052 3.948 16 N -0.538 5.538 17 C 0.009 3.991 18 C 0.382 3.618 19 O -0.476 6.476 20 C -0.221 4.221 21 C -0.152 4.152 22 C -0.154 4.154 23 C 0.045 3.955 24 C 0.112 3.888 25 H 0.272 0.728 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.036 0.964 32 H 0.139 0.861 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.084 0.916 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.084 0.916 39 H 0.035 0.965 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.748 -24.302 7.515 31.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.079 5.921 10 C -0.276 4.276 11 C 0.322 3.678 12 O -0.442 6.442 13 N -0.344 5.344 14 C -0.010 4.010 15 C -0.076 4.076 16 N -0.263 5.263 17 C -0.119 4.119 18 C 0.259 3.741 19 O -0.351 6.351 20 C -0.240 4.240 21 C -0.189 4.189 22 C -0.191 4.191 23 C -0.084 4.084 24 C -0.011 4.011 25 H 0.081 0.919 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.137 0.863 31 H 0.054 0.946 32 H 0.156 0.844 33 H 0.104 0.896 34 H 0.171 0.829 35 H 0.102 0.898 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.103 0.897 39 H 0.053 0.947 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.174 -24.333 6.545 30.494 hybrid contribution 1.102 1.624 0.634 2.063 sum 18.276 -22.709 7.179 30.021 Atomic orbital electron populations 1.70184 1.07959 1.28651 1.47909 1.26143 0.96000 1.03326 0.93679 0.84940 0.78192 0.75933 0.78827 1.19301 1.20153 1.18198 1.23184 0.95296 0.91924 1.59016 0.90017 1.85544 1.10364 0.99164 1.97017 1.23363 1.03523 0.94519 1.06161 1.20102 0.85959 0.86573 0.75147 1.90666 1.16972 1.85748 1.50833 1.48182 1.07114 1.05873 1.73268 1.21793 0.99401 0.79673 1.00098 1.22483 0.86350 1.02183 0.96556 1.61735 1.05784 1.07260 1.51559 1.22612 0.92601 1.01031 0.95630 1.24168 0.91124 0.77015 0.81754 1.90380 1.80238 1.37138 1.27297 1.22927 0.90561 1.05490 1.05031 1.23022 0.96392 0.98115 1.01354 1.23014 0.97277 1.00369 0.98457 1.22512 1.01455 0.87836 0.96570 1.21959 0.77900 1.01011 1.00216 0.91940 0.87661 0.87697 0.90003 0.89959 0.86288 0.94571 0.84356 0.89611 0.82871 0.89756 0.85645 0.85723 0.89731 0.94682 0.88424 0.89959 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.51 13.22 21.65 0.29 -56.23 16 2 C 0.01 0.77 5.49 84.86 0.47 1.23 16 3 Si 1.00 44.10 29.55 68.60 2.03 46.13 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.55 -31.75 9.50 67.95 0.65 -31.10 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 10 C -0.12 -5.25 4.52 71.23 0.32 -4.92 16 11 C 0.53 21.33 7.73 87.66 0.68 22.00 16 12 O -0.56 -27.19 15.32 -3.03 -0.05 -27.23 16 13 N -0.61 -18.19 3.01 -817.87 -2.46 -20.65 16 14 C 0.11 2.76 6.59 86.35 0.57 3.32 16 15 C 0.05 0.91 5.62 86.38 0.49 1.40 16 16 N -0.54 -9.61 4.37 -899.73 -3.93 -13.54 16 17 C 0.01 0.10 5.39 85.56 0.46 0.56 16 18 C 0.38 5.47 6.58 29.10 0.19 5.67 16 19 O -0.48 -10.64 14.41 -1.45 -0.02 -10.66 16 20 C -0.22 -1.92 6.12 -11.54 -0.07 -1.99 16 21 C -0.15 -1.38 10.14 30.62 0.31 -1.07 16 22 C -0.15 -1.45 10.05 30.62 0.31 -1.14 16 23 C 0.04 0.93 5.26 86.40 0.45 1.39 16 24 C 0.11 2.72 6.51 86.36 0.56 3.28 16 25 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 26 H 0.11 4.04 7.66 -2.39 -0.02 4.02 16 27 H 0.10 4.08 8.00 -2.40 -0.02 4.06 16 28 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.08 2.30 7.07 -2.39 -0.02 2.28 16 30 H 0.12 1.35 7.99 -2.38 -0.02 1.33 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.14 0.80 7.97 -2.39 -0.02 0.79 16 33 H 0.09 0.76 8.12 -2.39 -0.02 0.74 16 34 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.13 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 1.15 7.89 -2.39 -0.02 1.13 16 39 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 2.08 5.77 -2.39 -0.01 2.06 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.09 2.23 6.02 -2.39 -0.01 2.22 16 Total: -1.00 -80.36 359.01 1.09 -79.27 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 1.01 Total: 13.90 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.38 Total: -1.38 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -6.11 Total: -90.42 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.07 Total: -37.89 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -80.36 1.09 -79.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346096311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.784 kcal (2) G-P(sol) polarization free energy of solvation -80.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds