Wall clock time and date at job start Fri Apr 10 2020 18:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47102 * 2 1 4 4 H 1.09000 * 109.13490 * 54.48053 * 3 2 1 5 5 C 1.52906 * 109.31131 * 173.94885 * 3 2 1 6 6 C 1.53347 * 108.69117 * 171.04229 * 5 3 2 7 7 H 1.08997 * 109.70336 * 172.72821 * 6 5 3 8 8 C 1.50706 * 109.66971 * 52.21627 * 6 5 3 9 9 O 1.21293 * 119.99970 * 268.16402 * 8 6 5 10 10 N 1.34770 * 119.99909 * 88.16072 * 8 6 5 11 11 C 1.37108 * 120.00215 * 4.57408 * 10 8 6 12 12 H 1.07994 * 119.99449 * 32.11402 * 11 10 8 13 13 C 1.38946 * 119.99911 * 212.11529 * 11 10 8 14 14 N 1.31415 * 119.99763 * 214.40931 * 13 11 10 15 15 Si 1.86795 * 120.00461 * 34.40442 * 13 11 10 16 16 H 1.48506 * 109.46878 * 90.26420 * 15 13 11 17 17 H 1.48503 * 109.47284 * 330.26881 * 15 13 11 18 18 H 1.48494 * 109.47372 * 210.26324 * 15 13 11 19 19 C 1.46503 * 120.00069 * 184.57741 * 10 8 6 20 20 C 1.50701 * 109.46594 * 274.80113 * 19 10 8 21 21 O 1.20824 * 120.00425 * 0.02562 * 20 19 10 22 22 O 1.34237 * 119.99978 * 179.97438 * 20 19 10 23 23 C 1.45196 * 117.00387 * 180.02562 * 22 20 19 24 24 C 1.53061 * 108.42557 * 292.48589 * 6 5 3 25 25 C 1.50176 * 109.89568 * 48.89718 * 24 6 5 26 26 O 1.21278 * 118.25059 * 162.39685 * 25 24 6 27 27 N 1.33359 * 123.50544 * 342.41925 * 25 24 6 28 28 H 1.08998 * 109.47072 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47262 * 300.00631 * 1 2 3 30 30 H 1.09004 * 109.46771 * 59.99915 * 1 2 3 31 31 H 1.09000 * 109.47434 * 240.00022 * 2 1 3 32 32 H 1.09003 * 109.47383 * 119.99373 * 2 1 3 33 33 H 1.09009 * 109.58792 * 51.28688 * 5 3 2 34 34 H 1.09000 * 109.60801 * 290.81553 * 5 3 2 35 35 H 0.97000 * 120.00251 * 180.02562 * 14 13 11 36 36 H 1.08996 * 109.47221 * 34.80063 * 19 10 8 37 37 H 1.09000 * 109.47444 * 154.80924 * 19 10 8 38 38 H 1.09007 * 109.47228 * 300.00847 * 23 22 20 39 39 H 1.09004 * 109.46808 * 59.99898 * 23 22 20 40 40 H 1.08997 * 109.47593 * 180.02562 * 23 22 20 41 41 H 1.09004 * 109.40420 * 169.02873 * 24 6 5 42 42 H 1.09004 * 109.39943 * 288.76750 * 24 6 5 43 43 H 0.96995 * 117.94708 * 182.22667 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5950 1.9788 0.8382 5 6 3.5614 1.4409 0.1521 6 6 4.0794 2.8665 -0.0739 7 1 5.1438 2.9116 0.1565 8 6 3.3274 3.8259 0.8123 9 8 2.3288 4.3770 0.3996 10 7 3.7646 4.0715 2.0632 11 6 4.9433 3.5224 2.4977 12 1 5.7507 3.3554 1.8001 13 6 5.0991 3.1807 3.8355 14 7 6.2727 3.3065 4.4134 15 14 3.6406 2.5426 4.8126 16 1 3.5816 1.0627 4.7043 17 1 2.3879 3.1287 4.2717 18 1 3.7926 2.9289 6.2383 19 6 2.9801 4.9251 2.9589 20 6 3.3321 6.3695 2.7120 21 8 4.1534 6.6564 1.8735 22 8 2.7323 7.3375 3.4228 23 6 3.1199 8.7060 3.1312 24 6 3.8536 3.2361 -1.5420 25 6 2.4421 2.9123 -1.9393 26 8 1.9962 3.4259 -2.9434 27 7 1.6524 2.0905 -1.2467 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 4.0018 0.7705 -0.5860 34 1 3.8284 1.1096 1.1557 35 1 6.3816 3.0677 5.3472 36 1 1.9179 4.7723 2.7685 37 1 3.2044 4.6685 3.9943 38 1 4.1877 8.8279 3.3131 39 1 2.9012 8.9310 2.0873 40 1 2.5621 9.3866 3.7744 41 1 4.0326 4.3027 -1.6785 42 1 4.5446 2.6713 -2.1679 43 1 0.7647 1.9126 -1.5947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346761730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:34 Heat of formation + Delta-G solvation = -145.946573 kcal Electronic energy + Delta-G solvation = -28188.702694 eV Core-core repulsion = 24234.653861 eV Total energy + Delta-G solvation = -3954.048834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.57614 -39.80791 -38.37099 -36.60353 -35.86639 -34.93843 -33.45039 -32.19484 -31.72687 -29.02418 -28.73703 -26.75036 -25.32472 -24.47533 -22.70188 -21.49053 -20.84103 -19.89275 -18.59039 -17.44023 -17.16985 -16.76755 -16.32958 -15.87700 -15.77191 -15.51277 -15.19884 -14.91653 -14.50936 -14.00221 -13.87633 -13.54681 -13.26833 -13.22661 -13.08705 -12.93391 -12.67474 -12.45163 -12.06828 -11.80718 -11.72095 -11.51273 -11.38904 -11.24158 -11.12492 -10.95883 -10.84138 -10.60768 -10.47012 -10.33188 -10.18209 -9.83185 -9.32714 -9.21602 -8.72290 -8.61863 -8.10803 -6.75634 -4.18685 2.85199 2.94963 2.98548 3.06325 3.14355 3.20606 3.59511 3.76235 3.91433 4.16449 4.66813 4.78369 4.89807 4.97598 5.19218 5.22788 5.37049 5.40485 5.44617 5.46496 5.50569 5.61738 5.68927 5.75973 5.79537 5.82290 5.88524 5.92116 5.95840 6.08316 6.18359 6.23208 6.35178 6.39806 6.43310 6.86063 7.01048 7.21530 7.81272 7.82066 8.04609 8.40905 8.71832 8.74748 9.12264 9.45663 10.34496 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.006325 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.841043 B = 4426.017063 C = 5530.105639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.135 4.135 3 C 0.139 3.861 4 H 0.076 0.924 5 C -0.114 4.114 6 C -0.095 4.095 7 H 0.112 0.888 8 C 0.489 3.511 9 O -0.581 6.581 10 N -0.439 5.439 11 C -0.358 4.358 12 H 0.108 0.892 13 C 0.074 3.926 14 N -0.827 5.827 15 Si 0.842 3.158 16 H -0.269 1.269 17 H -0.253 1.253 18 H -0.278 1.278 19 C 0.122 3.878 20 C 0.446 3.554 21 O -0.488 6.488 22 O -0.371 6.371 23 C 0.037 3.963 24 C -0.118 4.118 25 C 0.544 3.456 26 O -0.577 6.577 27 N -0.704 5.704 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.278 0.722 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.968 -4.395 -0.999 7.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C 0.034 3.966 4 H 0.094 0.906 5 C -0.152 4.152 6 C -0.116 4.116 7 H 0.130 0.870 8 C 0.279 3.721 9 O -0.465 6.465 10 N -0.160 5.160 11 C -0.484 4.484 12 H 0.126 0.874 13 C -0.137 4.137 14 N -0.459 5.459 15 Si 0.666 3.334 16 H -0.195 1.195 17 H -0.178 1.178 18 H -0.204 1.204 19 C -0.004 4.004 20 C 0.287 3.713 21 O -0.373 6.373 22 O -0.288 6.288 23 C -0.057 4.057 24 C -0.158 4.158 25 C 0.332 3.668 26 O -0.457 6.457 27 N -0.356 5.356 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.025 -3.691 -1.691 7.265 hybrid contribution -0.615 -0.158 0.823 1.039 sum -6.640 -3.849 -0.868 7.724 Atomic orbital electron populations 1.21795 0.95748 1.01649 1.01999 1.21932 0.96270 0.96078 1.03050 1.21008 0.95929 0.92594 0.87091 0.90627 1.21780 0.93392 0.95609 1.04411 1.21209 1.03020 0.94560 0.92839 0.86956 1.20186 0.85100 0.83787 0.83028 1.90615 1.27631 1.53947 1.74320 1.43342 1.21781 1.39510 1.11326 1.18970 0.90605 1.43437 0.95349 0.87432 1.25273 0.96442 0.95621 0.96320 1.69992 1.25008 1.38368 1.12563 0.87587 0.84637 0.81248 0.79915 1.19509 1.17768 1.20354 1.21477 0.98527 0.83226 0.97122 1.24881 0.78741 0.89216 0.78497 1.90612 1.31205 1.83444 1.32037 1.86515 1.64078 1.16725 1.61511 1.23123 1.01123 0.79754 1.01728 1.21512 0.93717 1.04477 0.96118 1.19843 0.88214 0.76701 0.82003 1.90672 1.75286 1.52079 1.27693 1.45367 1.17853 1.47604 1.24737 0.92538 0.92370 0.92842 0.91322 0.90337 0.90549 0.88454 0.91194 0.87630 0.87470 0.92228 0.92371 0.88789 0.88239 0.88354 0.77373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.76 37.15 0.36 -1.19 16 2 C -0.14 -1.47 5.57 -26.73 -0.15 -1.62 16 3 C 0.14 1.99 2.33 -68.38 -0.16 1.84 16 4 H 0.08 1.26 7.17 -51.93 -0.37 0.88 16 5 C -0.11 -1.65 4.93 -26.60 -0.13 -1.78 16 6 C -0.10 -1.68 2.48 -91.56 -0.23 -1.90 16 7 H 0.11 1.98 6.19 -51.93 -0.32 1.66 16 8 C 0.49 10.48 5.37 -10.99 -0.06 10.42 16 9 O -0.58 -13.72 14.06 5.55 0.08 -13.65 16 10 N -0.44 -9.82 1.78 -116.09 -0.21 -10.02 16 11 C -0.36 -8.43 9.05 -14.93 -0.14 -8.56 16 12 H 0.11 2.65 6.45 -52.49 -0.34 2.31 16 13 C 0.07 1.74 5.05 -17.47 -0.09 1.66 16 14 N -0.83 -20.87 13.96 55.50 0.77 -20.09 16 15 Si 0.84 17.11 26.31 -169.99 -4.47 12.64 16 16 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 17 H -0.25 -4.87 5.52 56.52 0.31 -4.56 16 18 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 19 C 0.12 2.61 4.09 -5.19 -0.02 2.59 16 20 C 0.45 9.81 7.99 36.01 0.29 10.10 16 21 O -0.49 -12.11 16.08 -18.75 -0.30 -12.41 16 22 O -0.37 -6.97 10.57 -39.28 -0.41 -7.38 16 23 C 0.04 0.55 10.56 101.05 1.07 1.61 16 24 C -0.12 -2.03 5.25 -28.11 -0.15 -2.18 16 25 C 0.54 10.24 6.38 -11.87 -0.08 10.16 16 26 O -0.58 -12.79 17.78 5.56 0.10 -12.69 16 27 N -0.70 -11.22 4.86 -54.86 -0.27 -11.49 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.05 0.53 6.67 -51.93 -0.35 0.19 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.92 8.11 -51.92 -0.42 0.50 16 34 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 36 H 0.11 2.11 7.64 -51.93 -0.40 1.72 16 37 H 0.11 2.22 3.97 -51.93 -0.21 2.02 16 38 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 39 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.10 1.89 8.10 -51.93 -0.42 1.47 16 42 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.39 5.77 7.04 -40.82 -0.29 5.48 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -31.75 346.83 -5.10 -36.85 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -6.14 Total: 11.88 kcal Atomic # 6 Polarization: 20.61 SS G_CDS: 0.52 Total: 21.13 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.30 Total: -41.60 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -0.54 Total: -46.13 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -4.47 Total: 12.64 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.75 -5.10 -36.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346761730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.097 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds