Wall clock time and date at job start Fri Apr 10 2020 18:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47102 * 2 1 4 4 H 1.09000 * 109.13490 * 54.48053 * 3 2 1 5 5 C 1.52906 * 109.31131 * 173.94885 * 3 2 1 6 6 C 1.53347 * 108.69117 * 171.04229 * 5 3 2 7 7 H 1.08997 * 109.70336 * 172.72821 * 6 5 3 8 8 C 1.50706 * 109.66971 * 52.21627 * 6 5 3 9 9 O 1.21293 * 119.99970 * 268.16402 * 8 6 5 10 10 N 1.34770 * 119.99909 * 88.16072 * 8 6 5 11 11 C 1.37108 * 120.00215 * 4.57408 * 10 8 6 12 12 H 1.07994 * 119.99449 * 32.11402 * 11 10 8 13 13 C 1.38946 * 119.99911 * 212.11529 * 11 10 8 14 14 N 1.31415 * 119.99763 * 214.40931 * 13 11 10 15 15 Si 1.86795 * 120.00461 * 34.40442 * 13 11 10 16 16 H 1.48506 * 109.46878 * 90.26420 * 15 13 11 17 17 H 1.48503 * 109.47284 * 330.26881 * 15 13 11 18 18 H 1.48494 * 109.47372 * 210.26324 * 15 13 11 19 19 C 1.46503 * 120.00069 * 184.57741 * 10 8 6 20 20 C 1.50701 * 109.46594 * 274.80113 * 19 10 8 21 21 O 1.20824 * 120.00425 * 0.02562 * 20 19 10 22 22 O 1.34237 * 119.99978 * 179.97438 * 20 19 10 23 23 C 1.45196 * 117.00387 * 180.02562 * 22 20 19 24 24 C 1.53061 * 108.42557 * 292.48589 * 6 5 3 25 25 C 1.50176 * 109.89568 * 48.89718 * 24 6 5 26 26 O 1.21278 * 118.25059 * 162.39685 * 25 24 6 27 27 N 1.33359 * 123.50544 * 342.41925 * 25 24 6 28 28 H 1.08998 * 109.47072 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47262 * 300.00631 * 1 2 3 30 30 H 1.09004 * 109.46771 * 59.99915 * 1 2 3 31 31 H 1.09000 * 109.47434 * 240.00022 * 2 1 3 32 32 H 1.09003 * 109.47383 * 119.99373 * 2 1 3 33 33 H 1.09009 * 109.58792 * 51.28688 * 5 3 2 34 34 H 1.09000 * 109.60801 * 290.81553 * 5 3 2 35 35 H 0.97000 * 120.00251 * 180.02562 * 14 13 11 36 36 H 1.08996 * 109.47221 * 34.80063 * 19 10 8 37 37 H 1.09000 * 109.47444 * 154.80924 * 19 10 8 38 38 H 1.09007 * 109.47228 * 300.00847 * 23 22 20 39 39 H 1.09004 * 109.46808 * 59.99898 * 23 22 20 40 40 H 1.08997 * 109.47593 * 180.02562 * 23 22 20 41 41 H 1.09004 * 109.40420 * 169.02873 * 24 6 5 42 42 H 1.09004 * 109.39943 * 288.76750 * 24 6 5 43 43 H 0.96995 * 117.94708 * 182.22667 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5950 1.9788 0.8382 5 6 3.5614 1.4409 0.1521 6 6 4.0794 2.8665 -0.0739 7 1 5.1438 2.9116 0.1565 8 6 3.3274 3.8259 0.8123 9 8 2.3288 4.3770 0.3996 10 7 3.7646 4.0715 2.0632 11 6 4.9433 3.5224 2.4977 12 1 5.7507 3.3554 1.8001 13 6 5.0991 3.1807 3.8355 14 7 6.2727 3.3065 4.4134 15 14 3.6406 2.5426 4.8126 16 1 3.5816 1.0627 4.7043 17 1 2.3879 3.1287 4.2717 18 1 3.7926 2.9289 6.2383 19 6 2.9801 4.9251 2.9589 20 6 3.3321 6.3695 2.7120 21 8 4.1534 6.6564 1.8735 22 8 2.7323 7.3375 3.4228 23 6 3.1199 8.7060 3.1312 24 6 3.8536 3.2361 -1.5420 25 6 2.4421 2.9123 -1.9393 26 8 1.9962 3.4259 -2.9434 27 7 1.6524 2.0905 -1.2467 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 4.0018 0.7705 -0.5860 34 1 3.8284 1.1096 1.1557 35 1 6.3816 3.0677 5.3472 36 1 1.9179 4.7723 2.7685 37 1 3.2044 4.6685 3.9943 38 1 4.1877 8.8279 3.3131 39 1 2.9012 8.9310 2.0873 40 1 2.5621 9.3866 3.7744 41 1 4.0326 4.3027 -1.6785 42 1 4.5446 2.6713 -2.1679 43 1 0.7647 1.9126 -1.5947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346761730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:33 Heat of formation + Delta-G solvation = -167.643961 kcal Electronic energy + Delta-G solvation = -28189.643564 eV Core-core repulsion = 24234.653861 eV Total energy + Delta-G solvation = -3954.989703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09380 -41.40521 -39.99381 -37.97822 -37.48152 -36.70305 -34.75997 -34.01421 -32.93398 -30.61888 -29.91860 -28.11437 -27.04790 -25.79132 -24.04208 -22.70083 -22.27603 -21.45127 -20.20935 -19.09706 -18.77298 -18.21768 -17.85426 -17.41099 -17.23800 -17.08278 -16.85293 -16.27698 -16.02863 -15.59213 -15.16273 -14.76400 -14.61649 -14.59814 -14.53870 -14.35864 -14.18641 -13.92096 -13.38980 -13.32872 -13.01556 -12.86752 -12.84155 -12.70350 -12.50870 -12.27981 -12.00841 -11.90593 -11.83615 -11.78986 -11.64543 -11.53886 -11.04668 -10.69764 -10.42997 -9.97426 -9.89941 -8.56922 -6.03823 1.15148 1.30579 1.37889 1.47292 1.52497 1.74285 1.97654 2.21386 2.44862 2.53933 2.94300 3.63952 3.70767 3.77769 3.86285 3.91350 3.99648 4.15292 4.22942 4.26061 4.26742 4.27982 4.36499 4.52508 4.60982 4.64111 4.67671 4.79531 4.88262 4.97512 5.08162 5.15432 5.17729 5.21550 5.30571 5.31065 5.43887 5.93625 6.04006 6.19119 6.45697 6.72821 6.94751 7.30671 7.35162 7.71609 8.56621 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.006325 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.841043 B = 4426.017063 C = 5530.105639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.126 4.126 3 C 0.137 3.863 4 H 0.053 0.947 5 C -0.109 4.109 6 C -0.093 4.093 7 H 0.110 0.890 8 C 0.485 3.515 9 O -0.607 6.607 10 N -0.446 5.446 11 C -0.359 4.359 12 H 0.087 0.913 13 C 0.040 3.960 14 N -0.870 5.870 15 Si 0.897 3.103 16 H -0.258 1.258 17 H -0.239 1.239 18 H -0.279 1.279 19 C 0.114 3.886 20 C 0.445 3.555 21 O -0.526 6.526 22 O -0.368 6.368 23 C 0.029 3.971 24 C -0.115 4.115 25 C 0.538 3.462 26 O -0.618 6.618 27 N -0.693 5.693 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.282 0.718 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.141 0.859 41 H 0.075 0.925 42 H 0.135 0.865 43 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.173 -5.928 -0.306 9.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.164 4.164 3 C 0.032 3.968 4 H 0.071 0.929 5 C -0.147 4.147 6 C -0.114 4.114 7 H 0.128 0.872 8 C 0.277 3.723 9 O -0.492 6.492 10 N -0.167 5.167 11 C -0.485 4.485 12 H 0.104 0.896 13 C -0.167 4.167 14 N -0.504 5.504 15 Si 0.718 3.282 16 H -0.183 1.183 17 H -0.162 1.162 18 H -0.204 1.204 19 C -0.012 4.012 20 C 0.288 3.712 21 O -0.414 6.414 22 O -0.284 6.284 23 C -0.064 4.064 24 C -0.155 4.155 25 C 0.326 3.674 26 O -0.503 6.503 27 N -0.343 5.343 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.159 0.841 41 H 0.093 0.907 42 H 0.153 0.847 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.257 -5.243 -0.957 9.004 hybrid contribution -0.237 0.452 0.624 0.807 sum -7.494 -4.790 -0.332 8.901 Atomic orbital electron populations 1.21807 0.95168 1.02775 1.01506 1.21888 0.96731 0.93357 1.04440 1.21122 0.95837 0.94472 0.85321 0.92924 1.21841 0.93525 0.93780 1.05552 1.21241 1.02395 0.95684 0.92091 0.87208 1.20849 0.84888 0.83689 0.82912 1.90592 1.28937 1.54990 1.74681 1.43406 1.21565 1.39852 1.11838 1.18818 0.90461 1.43960 0.95270 0.89594 1.25814 0.98631 0.95235 0.97064 1.70049 1.27210 1.39862 1.13260 0.86699 0.81989 0.81169 0.78296 1.18318 1.16242 1.20419 1.21631 0.99084 0.83103 0.97347 1.25002 0.78105 0.90143 0.77996 1.90593 1.32953 1.84138 1.33744 1.86489 1.63326 1.18064 1.60512 1.23522 1.01934 0.78116 1.02871 1.21519 0.93896 1.03584 0.96487 1.20107 0.88892 0.76657 0.81695 1.90648 1.76155 1.53848 1.29617 1.45350 1.17739 1.46531 1.24654 0.90602 0.93117 0.93153 0.89837 0.88957 0.87256 0.88378 0.90802 0.86383 0.86824 0.92505 0.92676 0.84123 0.90684 0.84697 0.76733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.76 71.98 0.70 -2.00 16 2 C -0.13 -2.35 5.57 30.59 0.17 -2.17 16 3 C 0.14 3.67 2.33 45.10 0.10 3.77 16 4 H 0.05 1.68 7.17 -2.39 -0.02 1.67 16 5 C -0.11 -2.93 4.93 30.68 0.15 -2.78 16 6 C -0.09 -3.23 2.48 -11.40 -0.03 -3.25 16 7 H 0.11 3.88 6.19 -2.39 -0.01 3.87 16 8 C 0.49 20.86 5.37 87.66 0.47 21.33 16 9 O -0.61 -28.89 14.06 -3.07 -0.04 -28.93 16 10 N -0.45 -19.95 1.78 -639.60 -1.14 -21.09 16 11 C -0.36 -17.02 9.05 84.04 0.76 -16.26 16 12 H 0.09 4.36 6.45 -2.91 -0.02 4.34 16 13 C 0.04 1.88 5.05 84.92 0.43 2.31 16 14 N -0.87 -44.18 13.96 21.66 0.30 -43.87 16 15 Si 0.90 34.23 26.31 68.60 1.80 36.04 16 16 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 17 H -0.24 -8.48 5.52 99.48 0.55 -7.93 16 18 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 19 C 0.11 4.80 4.09 85.63 0.35 5.15 16 20 C 0.45 19.60 7.99 71.24 0.57 20.17 16 21 O -0.53 -26.60 16.08 21.97 0.35 -26.25 16 22 O -0.37 -13.42 10.57 -51.48 -0.54 -13.96 16 23 C 0.03 0.81 10.56 113.37 1.20 2.00 16 24 C -0.11 -3.90 5.25 29.70 0.16 -3.75 16 25 C 0.54 19.98 6.38 87.71 0.56 20.54 16 26 O -0.62 -27.62 17.78 -3.02 -0.05 -27.68 16 27 N -0.69 -21.24 4.86 -446.66 -2.17 -23.41 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.05 0.90 6.67 -2.38 -0.02 0.88 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.11 2.25 8.11 -2.38 -0.02 2.23 16 34 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.28 13.25 8.31 -92.71 -0.77 12.48 16 36 H 0.12 4.63 7.64 -2.39 -0.02 4.61 16 37 H 0.11 4.58 3.97 -2.39 -0.01 4.58 16 38 H 0.06 1.63 8.13 -2.38 -0.02 1.61 16 39 H 0.05 1.59 8.13 -2.38 -0.02 1.57 16 40 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.07 2.92 8.10 -2.38 -0.02 2.90 16 42 H 0.14 3.51 8.14 -2.38 -0.02 3.49 16 43 H 0.40 11.26 7.04 -92.71 -0.65 10.61 16 Total: -1.00 -70.15 346.83 4.33 -65.81 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: 0.23 Total: 38.29 kcal Atomic # 6 Polarization: 39.46 SS G_CDS: 5.59 Total: 45.05 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -3.01 Total: -88.37 kcal Atomic # 8 Polarization: -96.53 SS G_CDS: -0.29 Total: -96.82 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 1.80 Total: 36.04 kcal Total: -70.15 4.33 -65.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346761730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.830 kcal (2) G-P(sol) polarization free energy of solvation -70.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds