Wall clock time and date at job start Fri Apr 10 2020 18:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46724 * 2 1 4 4 H 1.08997 * 109.30369 * 54.57731 * 3 2 1 5 5 C 1.52916 * 109.30013 * 173.96257 * 3 2 1 6 6 C 1.53344 * 108.67834 * 171.06198 * 5 3 2 7 7 H 1.09009 * 109.67321 * 52.19835 * 6 5 3 8 8 C 1.50697 * 109.70676 * 172.71608 * 6 5 3 9 9 O 1.21290 * 120.00275 * 19.88455 * 8 6 5 10 10 N 1.34777 * 119.99867 * 199.89181 * 8 6 5 11 11 C 1.37098 * 120.00070 * 5.24752 * 10 8 6 12 12 H 1.07995 * 120.00242 * 16.66077 * 11 10 8 13 13 C 1.38955 * 119.99890 * 196.65506 * 11 10 8 14 14 N 1.31416 * 119.99979 * 19.35614 * 13 11 10 15 15 Si 1.86796 * 120.00140 * 199.35488 * 13 11 10 16 16 H 1.48501 * 109.46883 * 60.00393 * 15 13 11 17 17 H 1.48495 * 109.47357 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47479 * 300.00559 * 15 13 11 19 19 C 1.46509 * 120.00018 * 185.25433 * 10 8 6 20 20 C 1.50694 * 109.47172 * 85.78960 * 19 10 8 21 21 O 1.20824 * 120.00167 * 0.02562 * 20 19 10 22 22 O 1.34230 * 119.99928 * 180.02562 * 20 19 10 23 23 C 1.45201 * 117.00152 * 180.02562 * 22 20 19 24 24 C 1.53070 * 108.42594 * 292.46708 * 6 5 3 25 25 C 1.50176 * 109.89024 * 48.89703 * 24 6 5 26 26 O 1.21282 * 118.25037 * 162.44261 * 25 24 6 27 27 N 1.33361 * 123.50819 * 342.42024 * 25 24 6 28 28 H 1.08998 * 109.47710 * 300.00634 * 1 2 3 29 29 H 1.09001 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47084 * 60.00608 * 1 2 3 31 31 H 1.09001 * 109.46742 * 119.99242 * 2 1 3 32 32 H 1.08995 * 109.47290 * 239.99659 * 2 1 3 33 33 H 1.09006 * 109.60150 * 290.81761 * 5 3 2 34 34 H 1.09001 * 109.60682 * 51.30279 * 5 3 2 35 35 H 0.96999 * 119.99971 * 179.97438 * 14 13 11 36 36 H 1.08993 * 109.46930 * 205.79101 * 19 10 8 37 37 H 1.08999 * 109.46476 * 325.79281 * 19 10 8 38 38 H 1.09002 * 109.46925 * 59.99559 * 23 22 20 39 39 H 1.08995 * 109.47466 * 179.97438 * 23 22 20 40 40 H 1.09005 * 109.47241 * 300.00455 * 23 22 20 41 41 H 1.08994 * 109.40084 * 288.77058 * 24 6 5 42 42 H 1.09001 * 109.33443 * 168.97852 * 24 6 5 43 43 H 0.97003 * 117.94452 * 182.20302 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5978 1.9810 0.8383 5 6 3.5615 1.4408 0.1518 6 6 4.0792 2.8664 -0.0738 7 1 3.5352 3.5601 0.5674 8 6 5.5508 2.9290 0.2446 9 8 6.2112 1.9118 0.2627 10 7 6.1331 4.1152 0.5095 11 6 5.3687 5.2501 0.5955 12 1 4.2989 5.1724 0.7211 13 6 5.9705 6.5004 0.5211 14 7 7.1710 6.6219 0.0003 15 14 5.0732 8.0084 1.1612 16 1 4.7835 7.8353 2.6073 17 1 5.9235 9.2102 0.9667 18 1 3.7988 8.1788 0.4181 19 6 7.5830 4.1921 0.7055 20 6 8.2635 4.3392 -0.6310 21 8 7.6050 4.3766 -1.6433 22 8 9.6012 4.4288 -0.6968 23 6 10.1883 4.5694 -2.0174 24 6 3.8535 3.2365 -1.5418 25 6 2.4419 2.9126 -1.9392 26 8 1.9962 3.4257 -2.9436 27 7 1.6524 2.0904 -1.2468 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5137 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.8285 1.1092 1.1553 34 1 4.0020 0.7707 -0.5865 35 1 7.5909 7.4947 -0.0520 36 1 7.8200 5.0529 1.3306 37 1 7.9324 3.2818 1.1928 38 1 9.8104 5.4769 -2.4882 39 1 11.2728 4.6312 -1.9282 40 1 9.9221 3.7059 -2.6272 41 1 4.5444 2.6721 -2.1679 42 1 4.0317 4.3034 -1.6766 43 1 0.7646 1.9127 -1.5947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346761732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:45 Heat of formation + Delta-G solvation = -157.311300 kcal Electronic energy + Delta-G solvation = -27688.631192 eV Core-core repulsion = 23734.089547 eV Total energy + Delta-G solvation = -3954.541645 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.34746 -39.38550 -38.31314 -36.78725 -35.48640 -34.63602 -33.43545 -31.87550 -31.62540 -28.94208 -28.45118 -26.41450 -25.29354 -24.48397 -22.65997 -21.66978 -20.24491 -19.24825 -18.90807 -17.30543 -16.78162 -16.61706 -16.39676 -15.96698 -15.42882 -15.25624 -14.96454 -14.52603 -14.27885 -14.26692 -13.75217 -13.70670 -13.36130 -13.08573 -12.95794 -12.58967 -12.43889 -12.18960 -11.80924 -11.66385 -11.36255 -11.33343 -11.26519 -11.13152 -10.99998 -10.86153 -10.80484 -10.53548 -10.41710 -10.20043 -9.82582 -9.67458 -9.55609 -9.05419 -8.88596 -8.55799 -8.03094 -6.56785 -4.07220 2.99361 3.05860 3.15846 3.16770 3.38596 3.52556 3.67928 3.92582 4.04957 4.40961 4.71550 4.83145 4.87556 4.94174 5.13206 5.29164 5.33555 5.47912 5.52821 5.67121 5.69458 5.77273 5.81121 5.81653 5.91578 5.94886 6.05750 6.09031 6.20064 6.23965 6.25189 6.42414 6.57418 6.58517 6.63982 7.02264 7.27365 7.42137 7.53811 7.59580 8.14942 8.51996 8.90556 9.08817 9.27457 9.66804 10.50181 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.013665 B = 0.004946 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.513005 B = 5659.209505 C = 6543.331751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C 0.140 3.860 4 H 0.075 0.925 5 C -0.110 4.110 6 C -0.090 4.090 7 H 0.095 0.905 8 C 0.474 3.526 9 O -0.601 6.601 10 N -0.424 5.424 11 C -0.338 4.338 12 H 0.105 0.895 13 C 0.041 3.959 14 N -0.868 5.868 15 Si 0.925 3.075 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C 0.156 3.844 20 C 0.486 3.514 21 O -0.500 6.500 22 O -0.376 6.376 23 C 0.044 3.956 24 C -0.115 4.115 25 C 0.527 3.473 26 O -0.564 6.564 27 N -0.718 5.718 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.274 0.726 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.741 -6.992 3.502 9.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C 0.035 3.965 4 H 0.093 0.907 5 C -0.148 4.148 6 C -0.111 4.111 7 H 0.113 0.887 8 C 0.263 3.737 9 O -0.487 6.487 10 N -0.142 5.142 11 C -0.465 4.465 12 H 0.122 0.878 13 C -0.165 4.165 14 N -0.505 5.505 15 Si 0.751 3.249 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.030 3.970 20 C 0.327 3.673 21 O -0.384 6.384 22 O -0.293 6.293 23 C -0.050 4.050 24 C -0.155 4.155 25 C 0.315 3.685 26 O -0.443 6.443 27 N -0.371 5.371 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.140 0.860 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.117 0.883 42 H 0.134 0.866 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.438 -6.962 2.708 8.689 hybrid contribution -0.615 1.044 -0.161 1.222 sum -5.052 -5.918 2.547 8.188 Atomic orbital electron populations 1.21811 0.95713 1.01875 1.01845 1.21917 0.96064 0.95951 1.03405 1.21075 0.96217 0.92988 0.86260 0.90744 1.21761 0.91975 0.97034 1.04076 1.21107 0.95619 0.97303 0.97066 0.88681 1.19904 0.89153 0.83585 0.81016 1.90541 1.65688 1.34693 1.57768 1.43387 1.04250 1.06848 1.59671 1.19591 0.92804 0.82948 1.51187 0.87787 1.25212 0.96432 0.99270 0.95540 1.69759 1.15767 1.25727 1.39286 0.86015 0.79315 0.80114 0.79451 1.19699 1.20829 1.19684 1.20456 0.81681 1.03230 0.91647 1.23878 0.79350 0.70965 0.93105 1.90514 1.64998 1.45536 1.37383 1.86449 1.24883 1.85026 1.32985 1.22927 0.97209 1.01476 0.83429 1.21467 0.92035 1.05961 0.96073 1.20372 0.88344 0.77200 0.82546 1.90715 1.74812 1.52069 1.26714 1.45696 1.18157 1.47852 1.25423 0.92374 0.92439 0.92857 0.90233 0.91159 0.89619 0.90427 0.91496 0.85974 0.89902 0.92594 0.89648 0.93178 0.88335 0.86580 0.77210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.76 37.16 0.36 -0.86 16 2 C -0.14 -1.26 5.57 -26.73 -0.15 -1.41 16 3 C 0.14 1.65 3.07 -68.37 -0.21 1.44 16 4 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 5 C -0.11 -1.63 3.95 -26.60 -0.11 -1.74 16 6 C -0.09 -1.64 1.85 -91.56 -0.17 -1.81 16 7 H 0.10 1.67 6.36 -51.92 -0.33 1.34 16 8 C 0.47 10.65 6.64 -10.99 -0.07 10.58 16 9 O -0.60 -14.63 15.81 5.55 0.09 -14.55 16 10 N -0.42 -10.00 2.15 -116.10 -0.25 -10.25 16 11 C -0.34 -7.98 8.69 -14.93 -0.13 -8.11 16 12 H 0.10 2.30 6.00 -52.49 -0.31 1.99 16 13 C 0.04 0.97 4.94 -17.46 -0.09 0.89 16 14 N -0.87 -21.70 8.99 55.50 0.50 -21.20 16 15 Si 0.92 18.78 29.59 -169.99 -5.03 13.75 16 16 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 17 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 19 C 0.16 3.59 5.21 -5.19 -0.03 3.56 16 20 C 0.49 11.73 6.04 36.00 0.22 11.94 16 21 O -0.50 -13.47 15.74 -18.75 -0.30 -13.77 16 22 O -0.38 -7.98 10.57 -39.26 -0.41 -8.39 16 23 C 0.04 0.76 10.56 101.05 1.07 1.83 16 24 C -0.12 -2.23 5.27 -28.10 -0.15 -2.38 16 25 C 0.53 9.50 7.71 -11.87 -0.09 9.41 16 26 O -0.56 -12.11 17.78 5.56 0.10 -12.01 16 27 N -0.72 -9.94 5.12 -54.85 -0.28 -10.23 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.43 6.67 -51.92 -0.35 0.08 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.23 8.09 -51.93 -0.42 0.81 16 35 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.12 2.80 6.42 -51.93 -0.33 2.47 16 37 H 0.08 1.79 7.48 -51.93 -0.39 1.40 16 38 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 41 H 0.10 2.02 8.09 -51.93 -0.42 1.60 16 42 H 0.12 2.52 7.75 -51.93 -0.40 2.12 16 43 H 0.39 4.83 7.04 -40.82 -0.29 4.55 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -31.54 351.82 -6.01 -37.55 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.18 Total: 10.45 kcal Atomic # 6 Polarization: 22.88 SS G_CDS: 0.46 Total: 23.33 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -0.03 Total: -41.67 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -0.52 Total: -48.72 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.54 -6.01 -37.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346761732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.760 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds