Wall clock time and date at job start Fri Apr 10 2020 18:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46724 * 2 1 4 4 H 1.08997 * 109.30369 * 54.57731 * 3 2 1 5 5 C 1.52916 * 109.30013 * 173.96257 * 3 2 1 6 6 C 1.53344 * 108.67834 * 171.06198 * 5 3 2 7 7 H 1.09009 * 109.67321 * 52.19835 * 6 5 3 8 8 C 1.50697 * 109.70676 * 172.71608 * 6 5 3 9 9 O 1.21290 * 120.00275 * 19.88455 * 8 6 5 10 10 N 1.34777 * 119.99867 * 199.89181 * 8 6 5 11 11 C 1.37098 * 120.00070 * 5.24752 * 10 8 6 12 12 H 1.07995 * 120.00242 * 16.66077 * 11 10 8 13 13 C 1.38955 * 119.99890 * 196.65506 * 11 10 8 14 14 N 1.31416 * 119.99979 * 19.35614 * 13 11 10 15 15 Si 1.86796 * 120.00140 * 199.35488 * 13 11 10 16 16 H 1.48501 * 109.46883 * 60.00393 * 15 13 11 17 17 H 1.48495 * 109.47357 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47479 * 300.00559 * 15 13 11 19 19 C 1.46509 * 120.00018 * 185.25433 * 10 8 6 20 20 C 1.50694 * 109.47172 * 85.78960 * 19 10 8 21 21 O 1.20824 * 120.00167 * 0.02562 * 20 19 10 22 22 O 1.34230 * 119.99928 * 180.02562 * 20 19 10 23 23 C 1.45201 * 117.00152 * 180.02562 * 22 20 19 24 24 C 1.53070 * 108.42594 * 292.46708 * 6 5 3 25 25 C 1.50176 * 109.89024 * 48.89703 * 24 6 5 26 26 O 1.21282 * 118.25037 * 162.44261 * 25 24 6 27 27 N 1.33361 * 123.50819 * 342.42024 * 25 24 6 28 28 H 1.08998 * 109.47710 * 300.00634 * 1 2 3 29 29 H 1.09001 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47084 * 60.00608 * 1 2 3 31 31 H 1.09001 * 109.46742 * 119.99242 * 2 1 3 32 32 H 1.08995 * 109.47290 * 239.99659 * 2 1 3 33 33 H 1.09006 * 109.60150 * 290.81761 * 5 3 2 34 34 H 1.09001 * 109.60682 * 51.30279 * 5 3 2 35 35 H 0.96999 * 119.99971 * 179.97438 * 14 13 11 36 36 H 1.08993 * 109.46930 * 205.79101 * 19 10 8 37 37 H 1.08999 * 109.46476 * 325.79281 * 19 10 8 38 38 H 1.09002 * 109.46925 * 59.99559 * 23 22 20 39 39 H 1.08995 * 109.47466 * 179.97438 * 23 22 20 40 40 H 1.09005 * 109.47241 * 300.00455 * 23 22 20 41 41 H 1.08994 * 109.40084 * 288.77058 * 24 6 5 42 42 H 1.09001 * 109.33443 * 168.97852 * 24 6 5 43 43 H 0.97003 * 117.94452 * 182.20302 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5978 1.9810 0.8383 5 6 3.5615 1.4408 0.1518 6 6 4.0792 2.8664 -0.0738 7 1 3.5352 3.5601 0.5674 8 6 5.5508 2.9290 0.2446 9 8 6.2112 1.9118 0.2627 10 7 6.1331 4.1152 0.5095 11 6 5.3687 5.2501 0.5955 12 1 4.2989 5.1724 0.7211 13 6 5.9705 6.5004 0.5211 14 7 7.1710 6.6219 0.0003 15 14 5.0732 8.0084 1.1612 16 1 4.7835 7.8353 2.6073 17 1 5.9235 9.2102 0.9667 18 1 3.7988 8.1788 0.4181 19 6 7.5830 4.1921 0.7055 20 6 8.2635 4.3392 -0.6310 21 8 7.6050 4.3766 -1.6433 22 8 9.6012 4.4288 -0.6968 23 6 10.1883 4.5694 -2.0174 24 6 3.8535 3.2365 -1.5418 25 6 2.4419 2.9126 -1.9392 26 8 1.9962 3.4257 -2.9436 27 7 1.6524 2.0904 -1.2468 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5137 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.8285 1.1092 1.1553 34 1 4.0020 0.7707 -0.5865 35 1 7.5909 7.4947 -0.0520 36 1 7.8200 5.0529 1.3306 37 1 7.9324 3.2818 1.1928 38 1 9.8104 5.4769 -2.4882 39 1 11.2728 4.6312 -1.9282 40 1 9.9221 3.7059 -2.6272 41 1 4.5444 2.6721 -2.1679 42 1 4.0317 4.3034 -1.6766 43 1 0.7646 1.9127 -1.5947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346761732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:44 Heat of formation + Delta-G solvation = -177.869357 kcal Electronic energy + Delta-G solvation = -27689.522656 eV Core-core repulsion = 23734.089547 eV Total energy + Delta-G solvation = -3955.433109 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.83120 -41.13396 -40.04469 -38.09582 -37.26076 -36.50226 -34.78375 -33.46802 -33.00610 -30.41794 -29.89273 -27.97116 -26.97197 -25.86725 -24.02474 -22.67470 -21.94717 -20.99573 -20.28754 -18.87301 -18.44233 -18.20637 -18.13704 -17.38227 -17.10914 -16.96256 -16.39383 -16.17988 -15.94084 -15.70219 -15.09363 -14.73835 -14.69251 -14.54234 -14.31751 -14.19457 -13.94936 -13.73535 -13.33497 -13.07591 -12.92553 -12.85502 -12.59103 -12.52104 -12.29367 -12.27526 -12.14822 -11.79646 -11.78315 -11.65544 -11.55918 -11.48513 -11.16544 -10.91998 -10.30863 -10.09655 -9.88409 -8.38277 -5.93635 1.41164 1.49597 1.52481 1.58098 1.67326 1.81386 2.20784 2.28949 2.35224 2.80153 3.09437 3.57319 3.74039 3.75741 3.88092 4.13678 4.21187 4.26554 4.28740 4.35518 4.41230 4.42691 4.53238 4.62157 4.66562 4.70666 4.73638 4.80668 4.87491 4.96301 5.06746 5.20159 5.23400 5.33394 5.45220 5.48095 5.63591 5.73386 5.85730 6.26258 6.30891 7.07083 7.15669 7.23695 7.47123 7.86061 8.68410 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.013665 B = 0.004946 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.513005 B = 5659.209505 C = 6543.331751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.129 4.129 3 C 0.141 3.859 4 H 0.099 0.901 5 C -0.104 4.104 6 C -0.083 4.083 7 H 0.106 0.894 8 C 0.465 3.535 9 O -0.624 6.624 10 N -0.435 5.435 11 C -0.348 4.348 12 H 0.116 0.884 13 C -0.001 4.001 14 N -0.895 5.895 15 Si 0.989 3.011 16 H -0.257 1.257 17 H -0.289 1.289 18 H -0.274 1.274 19 C 0.153 3.847 20 C 0.486 3.514 21 O -0.537 6.537 22 O -0.377 6.377 23 C 0.039 3.961 24 C -0.107 4.107 25 C 0.533 3.467 26 O -0.603 6.603 27 N -0.697 5.697 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.271 0.729 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.133 0.867 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.207 -7.679 4.979 11.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C 0.038 3.962 4 H 0.117 0.883 5 C -0.142 4.142 6 C -0.104 4.104 7 H 0.124 0.876 8 C 0.256 3.744 9 O -0.512 6.512 10 N -0.153 5.153 11 C -0.475 4.475 12 H 0.134 0.866 13 C -0.203 4.203 14 N -0.534 5.534 15 Si 0.813 3.187 16 H -0.182 1.182 17 H -0.214 1.214 18 H -0.200 1.200 19 C 0.027 3.973 20 C 0.329 3.671 21 O -0.425 6.425 22 O -0.294 6.294 23 C -0.055 4.055 24 C -0.148 4.148 25 C 0.320 3.680 26 O -0.486 6.486 27 N -0.350 5.350 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.139 0.861 37 H 0.110 0.890 38 H 0.062 0.938 39 H 0.151 0.849 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.911 -7.689 4.232 10.582 hybrid contribution -0.040 1.196 -0.644 1.359 sum -5.951 -6.494 3.588 9.511 Atomic orbital electron populations 1.21811 0.94265 1.02827 1.02204 1.21884 0.97200 0.93657 1.03972 1.21290 0.94166 0.95098 0.85693 0.88302 1.21748 0.93974 0.94095 1.04396 1.21109 0.93039 1.00087 0.96133 0.87561 1.20618 0.90813 0.82930 0.80058 1.90509 1.66732 1.35334 1.58592 1.43620 1.04498 1.07328 1.59827 1.19947 0.93467 0.83136 1.50960 0.86618 1.26017 0.97115 1.01687 0.95454 1.69869 1.17146 1.25933 1.40415 0.85039 0.77694 0.76540 0.79410 1.18160 1.21418 1.19979 1.20514 0.81939 1.03483 0.91376 1.24077 0.80127 0.69942 0.92920 1.90489 1.65986 1.47459 1.38587 1.86420 1.23372 1.84403 1.35197 1.23269 0.99631 1.00899 0.81658 1.21257 0.93067 1.03778 0.96692 1.19991 0.87861 0.77757 0.82379 1.90698 1.75346 1.54015 1.28504 1.45572 1.17985 1.46023 1.25393 0.91435 0.91296 0.93079 0.88590 0.91804 0.88357 0.91732 0.91864 0.86130 0.88977 0.93772 0.84862 0.93155 0.90278 0.89529 0.75704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.76 71.98 0.70 -1.16 16 2 C -0.13 -1.97 5.57 30.59 0.17 -1.80 16 3 C 0.14 2.93 3.07 45.10 0.14 3.07 16 4 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 5 C -0.10 -2.91 3.95 30.68 0.12 -2.79 16 6 C -0.08 -2.99 1.85 -11.40 -0.02 -3.01 16 7 H 0.11 3.61 6.36 -2.38 -0.02 3.59 16 8 C 0.47 21.11 6.64 87.66 0.58 21.70 16 9 O -0.62 -30.72 15.81 -3.06 -0.05 -30.77 16 10 N -0.44 -20.83 2.15 -639.60 -1.38 -22.21 16 11 C -0.35 -16.50 8.69 84.04 0.73 -15.77 16 12 H 0.12 5.06 6.00 -2.91 -0.02 5.04 16 13 C 0.00 -0.03 4.94 84.93 0.42 0.39 16 14 N -0.90 -45.52 8.99 21.67 0.19 -45.32 16 15 Si 0.99 38.32 29.59 68.60 2.03 40.35 16 16 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 17 H -0.29 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 19 C 0.15 7.17 5.21 85.63 0.45 7.62 16 20 C 0.49 24.01 6.04 71.23 0.43 24.44 16 21 O -0.54 -29.97 15.74 21.97 0.35 -29.62 16 22 O -0.38 -16.06 10.57 -51.42 -0.54 -16.60 16 23 C 0.04 1.32 10.56 113.37 1.20 2.52 16 24 C -0.11 -4.27 5.27 29.71 0.16 -4.11 16 25 C 0.53 19.08 7.71 87.71 0.68 19.75 16 26 O -0.60 -26.12 17.78 -3.04 -0.05 -26.17 16 27 N -0.70 -17.96 5.12 -446.64 -2.29 -20.25 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.64 6.67 -2.38 -0.02 0.63 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 34 H 0.06 1.99 8.09 -2.39 -0.02 1.97 16 35 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 36 H 0.12 5.64 6.42 -2.39 -0.02 5.63 16 37 H 0.09 4.06 7.48 -2.39 -0.02 4.04 16 38 H 0.04 1.59 8.13 -2.39 -0.02 1.57 16 39 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.05 1.69 8.13 -2.38 -0.02 1.67 16 41 H 0.08 3.41 8.09 -2.39 -0.02 3.39 16 42 H 0.09 3.94 7.75 -2.39 -0.02 3.92 16 43 H 0.40 8.99 7.04 -92.71 -0.65 8.34 16 Total: -1.00 -69.89 351.82 4.40 -65.50 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: 0.38 Total: 34.24 kcal Atomic # 6 Polarization: 45.10 SS G_CDS: 5.75 Total: 50.85 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -3.47 Total: -87.78 kcal Atomic # 8 Polarization: -102.86 SS G_CDS: -0.30 Total: -103.16 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -69.89 4.40 -65.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346761732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.374 kcal (2) G-P(sol) polarization free energy of solvation -69.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds