Wall clock time and date at job start Fri Apr 10 2020 18:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00094 * 2 1 4 4 O 1.20823 * 119.99810 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99950 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46729 * 180.02562 * 5 3 2 7 7 C 1.37096 * 119.99906 * 269.99263 * 6 5 3 8 8 H 1.07994 * 120.00180 * 190.13746 * 7 6 5 9 9 C 1.38950 * 120.00016 * 10.15049 * 7 6 5 10 10 N 1.31415 * 120.00074 * 25.20193 * 9 7 6 11 11 Si 1.86797 * 120.00022 * 205.20913 * 9 7 6 12 12 H 1.48502 * 109.47113 * 59.99342 * 11 9 7 13 13 H 1.48501 * 109.47318 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47271 * 299.99516 * 11 9 7 15 15 C 1.34779 * 119.99903 * 90.00449 * 6 5 3 16 16 O 1.21285 * 120.00287 * 5.24825 * 15 6 5 17 17 C 1.50701 * 119.99507 * 185.25215 * 15 6 5 18 18 C 1.52998 * 109.46827 * 175.57835 * 17 15 6 19 19 C 1.53004 * 109.47043 * 185.33662 * 18 17 15 20 20 C 1.52999 * 110.21495 * 297.99026 * 19 18 17 21 21 C 1.54483 * 110.24369 * 176.06440 * 19 18 17 22 22 C 1.54630 * 101.76452 * 215.49753 * 21 19 18 23 23 C 1.51286 * 104.19349 * 24.79351 * 22 21 19 24 24 O 1.21292 * 124.93915 * 163.78426 * 23 22 21 25 25 N 1.34413 * 110.11714 * 343.75129 * 23 22 21 26 26 H 1.08997 * 109.47518 * 299.99828 * 1 2 3 27 27 H 1.09002 * 109.46995 * 60.00150 * 1 2 3 28 28 H 1.09005 * 109.46886 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47219 * 59.99846 * 5 3 2 30 30 H 1.09002 * 109.47403 * 299.99909 * 5 3 2 31 31 H 0.96998 * 120.00060 * 184.99987 * 10 9 7 32 32 H 1.08995 * 109.47233 * 55.57788 * 17 15 6 33 33 H 1.08996 * 109.47145 * 295.57373 * 17 15 6 34 34 H 1.09002 * 109.47170 * 65.33736 * 18 17 15 35 35 H 1.09004 * 109.47523 * 305.33720 * 18 17 15 36 36 H 1.09000 * 109.47549 * 300.82351 * 20 19 18 37 37 H 1.09003 * 109.47128 * 180.82508 * 20 19 18 38 38 H 1.08996 * 109.47122 * 60.82655 * 20 19 18 39 39 H 1.08999 * 110.96899 * 333.61292 * 21 19 18 40 40 H 1.08999 * 110.97097 * 97.34559 * 21 19 18 41 41 H 1.08998 * 110.49252 * 143.47421 * 22 21 19 42 42 H 1.09001 * 110.48554 * 265.99018 * 22 21 19 43 43 H 0.97005 * 124.34888 * 179.58822 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9816 2.6797 0.0011 7 6 4.1765 3.3373 -1.1860 8 1 4.6370 4.3141 -1.1929 9 6 3.7814 2.7470 -2.3802 10 7 2.8200 1.8512 -2.3839 11 14 4.6171 3.2268 -3.9805 12 1 6.0677 2.9219 -3.8922 13 1 4.0176 2.4591 -5.1015 14 1 4.4305 4.6804 -4.2200 15 6 4.1723 3.3256 1.1685 16 8 4.0933 2.7203 2.2165 17 6 4.4836 4.8001 1.1717 18 6 4.5437 5.3056 2.6145 19 6 4.7273 6.8245 2.6156 20 6 6.0499 7.1977 1.9430 21 6 4.6916 7.3663 4.0618 22 6 3.9818 8.7268 3.8714 23 6 3.1711 8.5485 2.6067 24 8 2.2614 9.2706 2.2571 25 7 3.6060 7.4739 1.9264 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9564 0.7805 -0.8891 30 1 3.9557 0.7809 0.8908 31 1 2.5933 1.3864 -3.2045 32 1 3.7045 5.3371 0.6307 33 1 5.4451 4.9695 0.6871 34 1 5.3833 4.8378 3.1287 35 1 3.6162 5.0513 3.1276 36 1 6.8749 6.7264 2.4771 37 1 6.1751 8.2803 1.9634 38 1 6.0419 6.8524 0.9092 39 1 4.1102 6.7104 4.7098 40 1 5.7000 7.5031 4.4522 41 1 3.3276 8.9376 4.7174 42 1 4.7138 9.5250 3.7483 43 1 3.2274 7.1670 1.0877 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355569638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:58 Heat of formation + Delta-G solvation = -174.727208 kcal Electronic energy + Delta-G solvation = -27177.953357 eV Core-core repulsion = 23222.656501 eV Total energy + Delta-G solvation = -3955.296856 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.68715 -41.27393 -40.14174 -38.29096 -37.31330 -36.50624 -33.97411 -33.50605 -32.26284 -30.89457 -29.69198 -27.94564 -27.03868 -26.22571 -24.11822 -22.10335 -21.75684 -21.17588 -20.68997 -18.76903 -18.51301 -18.32059 -17.64739 -17.27813 -17.00913 -16.94993 -16.32358 -16.10364 -16.08179 -15.69577 -15.06017 -14.80638 -14.58471 -14.34370 -14.23103 -14.04425 -13.63833 -13.52785 -13.33508 -13.14151 -13.10019 -13.02539 -12.86697 -12.58056 -12.51608 -12.21708 -12.13266 -11.89916 -11.74316 -11.58513 -11.49639 -11.42882 -10.92149 -10.91205 -10.46916 -10.10879 -9.94067 -8.41954 -5.90951 1.41133 1.49428 1.58480 1.59405 1.66973 1.80193 2.22208 2.35068 2.43872 2.85922 3.11313 3.39565 3.57824 3.85338 4.05294 4.11127 4.23036 4.31378 4.33967 4.35714 4.39294 4.43905 4.53537 4.65830 4.68109 4.70597 4.77197 4.86094 4.96736 5.02300 5.07087 5.18419 5.21732 5.30388 5.43191 5.48255 5.61206 5.70720 5.87745 6.11715 6.29982 7.05476 7.21872 7.23966 7.47940 7.88064 8.65351 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.013204 B = 0.004322 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.068067 B = 6477.087396 C = 7347.897742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.377 6.377 3 C 0.488 3.512 4 O -0.540 6.540 5 C 0.151 3.849 6 N -0.442 5.442 7 C -0.349 4.349 8 H 0.119 0.881 9 C -0.003 4.003 10 N -0.893 5.893 11 Si 0.990 3.010 12 H -0.260 1.260 13 H -0.290 1.290 14 H -0.271 1.271 15 C 0.452 3.548 16 O -0.631 6.631 17 C -0.110 4.110 18 C -0.091 4.091 19 C 0.155 3.845 20 C -0.155 4.155 21 C -0.115 4.115 22 C -0.144 4.144 23 C 0.505 3.495 24 O -0.599 6.599 25 N -0.721 5.721 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.134 0.866 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.271 0.729 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.127 0.873 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.817 4.558 7.303 11.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.294 6.294 3 C 0.331 3.669 4 O -0.428 6.428 5 C 0.025 3.975 6 N -0.160 5.160 7 C -0.476 4.476 8 H 0.137 0.863 9 C -0.205 4.205 10 N -0.531 5.531 11 Si 0.813 3.187 12 H -0.184 1.184 13 H -0.216 1.216 14 H -0.196 1.196 15 C 0.244 3.756 16 O -0.519 6.519 17 C -0.150 4.150 18 C -0.130 4.130 19 C 0.069 3.931 20 C -0.213 4.213 21 C -0.152 4.152 22 C -0.184 4.184 23 C 0.293 3.707 24 O -0.481 6.481 25 N -0.374 5.374 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.152 0.848 29 H 0.135 0.865 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.145 0.855 41 H 0.128 0.872 42 H 0.146 0.854 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.996 4.877 7.575 11.406 hybrid contribution -0.940 -0.310 -1.776 2.033 sum 6.056 4.567 5.799 9.548 Atomic orbital electron populations 1.23273 0.76302 1.04810 1.01075 1.86419 1.24012 1.33901 1.85071 1.24070 0.92621 0.80749 0.69471 1.90478 1.67380 1.37697 1.47240 1.20532 0.87014 0.86239 1.03741 1.43737 1.57422 1.08548 1.06297 1.20036 1.39306 1.05645 0.82608 0.86316 1.26022 0.94459 0.97458 1.02583 1.69970 1.24461 1.28419 1.30299 0.85043 0.78904 0.78270 0.76442 1.18447 1.21585 1.19570 1.21050 0.81225 0.90916 0.82450 1.90496 1.59403 1.69773 1.32266 1.21403 1.03572 0.90783 0.99242 1.21578 1.03049 0.93385 0.94994 1.21299 0.86751 0.91395 0.93654 1.22223 0.95102 1.02628 1.01373 1.22780 1.04213 0.94606 0.93643 1.22381 1.00388 1.00599 0.95011 1.21733 0.82356 0.79341 0.87232 1.90705 1.33011 1.49827 1.74559 1.46760 1.35450 1.29363 1.25818 0.93178 0.93788 0.84781 0.86490 0.88950 0.91861 0.91071 0.87519 0.88894 0.93440 0.88786 0.91094 0.92431 0.89920 0.85488 0.87244 0.85410 0.75929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 10.56 113.37 1.20 2.54 16 2 O -0.38 -16.29 10.57 -51.41 -0.54 -16.83 16 3 C 0.49 24.47 5.98 71.24 0.43 24.89 16 4 O -0.54 -30.61 15.79 21.97 0.35 -30.26 16 5 C 0.15 7.21 5.29 85.63 0.45 7.67 16 6 N -0.44 -21.48 2.11 -639.61 -1.35 -22.83 16 7 C -0.35 -16.70 9.18 84.04 0.77 -15.93 16 8 H 0.12 5.16 6.55 -2.91 -0.02 5.14 16 9 C 0.00 -0.16 4.87 84.93 0.41 0.25 16 10 N -0.89 -45.70 8.93 21.66 0.19 -45.51 16 11 Si 0.99 37.93 29.62 68.60 2.03 39.96 16 12 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 13 H -0.29 -11.32 7.11 99.48 0.71 -10.62 16 14 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 15 C 0.45 20.70 7.62 87.66 0.67 21.37 16 16 O -0.63 -31.45 15.51 -3.05 -0.05 -31.50 16 17 C -0.11 -3.83 3.60 29.85 0.11 -3.72 16 18 C -0.09 -2.57 3.74 30.60 0.11 -2.46 16 19 C 0.15 3.24 0.87 4.06 0.00 3.25 16 20 C -0.16 -2.55 8.46 71.98 0.61 -1.94 16 21 C -0.11 -1.73 6.21 31.65 0.20 -1.53 16 22 C -0.14 -2.47 6.86 30.59 0.21 -2.26 16 23 C 0.50 14.41 8.43 87.90 0.74 15.15 16 24 O -0.60 -23.02 18.03 -3.07 -0.06 -23.08 16 25 N -0.72 -19.35 5.37 -419.97 -2.26 -21.60 16 26 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 27 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 28 H 0.13 3.25 8.14 -2.38 -0.02 3.23 16 29 H 0.12 5.56 6.43 -2.39 -0.02 5.54 16 30 H 0.09 4.18 7.35 -2.39 -0.02 4.17 16 31 H 0.27 13.35 8.32 -92.71 -0.77 12.57 16 32 H 0.07 2.62 6.46 -2.39 -0.02 2.60 16 33 H 0.11 3.20 6.49 -2.39 -0.02 3.19 16 34 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.05 1.59 7.98 -2.38 -0.02 1.57 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.09 6.72 -2.39 -0.02 1.07 16 39 H 0.08 1.34 7.89 -2.39 -0.02 1.32 16 40 H 0.13 1.07 7.89 -2.39 -0.02 1.05 16 41 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.40 12.00 7.46 -92.70 -0.69 11.31 16 Total: -1.00 -73.99 353.59 4.58 -69.41 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.35 Total: 34.97 kcal Atomic # 6 Polarization: 41.36 SS G_CDS: 5.91 Total: 47.27 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -3.41 Total: -89.94 kcal Atomic # 8 Polarization: -101.37 SS G_CDS: -0.30 Total: -101.67 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -73.99 4.58 -69.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355569638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.313 kcal (2) G-P(sol) polarization free energy of solvation -73.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds