Wall clock time and date at job start Fri Apr 10 2020 18:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99966 * 2 1 4 4 H 1.48498 * 109.47091 * 270.00669 * 3 2 1 5 5 H 1.48506 * 109.47183 * 30.00250 * 3 2 1 6 6 H 1.48500 * 109.47195 * 150.00657 * 3 2 1 7 7 C 1.38791 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99898 * 359.97438 * 7 2 1 9 9 S 1.76207 * 120.00207 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99893 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46759 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00306 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00030 * 179.97438 * 11 10 9 14 14 C 1.46926 * 120.63336 * 180.02562 * 13 11 10 15 15 C 1.53191 * 108.89109 * 233.68039 * 14 13 11 16 16 C 1.53035 * 109.31327 * 305.29292 * 15 14 13 17 17 N 1.46497 * 109.46029 * 181.37638 * 16 15 14 18 18 C 1.46764 * 124.35320 * 119.72657 * 17 16 15 19 19 C 1.54657 * 105.38445 * 162.85270 * 18 17 16 20 20 C 1.54629 * 101.68688 * 25.76738 * 19 18 17 21 21 C 1.34426 * 124.35144 * 300.02068 * 17 16 15 22 22 O 1.21286 * 124.93699 * 0.43451 * 21 17 16 23 23 C 1.53038 * 109.54175 * 61.36680 * 16 15 14 24 24 C 1.47207 * 120.81118 * 0.14238 * 13 11 10 25 25 H 0.96996 * 120.00109 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47317 * 59.99808 * 10 9 7 27 27 H 1.09000 * 109.47045 * 299.99232 * 10 9 7 28 28 H 1.09002 * 109.58861 * 113.82042 * 14 13 11 29 29 H 1.08996 * 109.58519 * 353.53933 * 14 13 11 30 30 H 1.09003 * 109.49975 * 65.24379 * 15 14 13 31 31 H 1.09004 * 109.49655 * 185.34207 * 15 14 13 32 32 H 1.09004 * 109.45942 * 301.34050 * 16 15 14 33 33 H 1.09002 * 110.24575 * 281.97791 * 18 17 16 34 34 H 1.08997 * 110.24600 * 43.97733 * 18 17 16 35 35 H 1.09000 * 111.19882 * 267.59280 * 19 18 17 36 36 H 1.08998 * 110.82575 * 143.77194 * 19 18 17 37 37 H 1.08999 * 110.48491 * 216.31140 * 20 19 18 38 38 H 1.09001 * 110.60279 * 93.71855 * 20 19 18 39 39 H 1.09002 * 109.49557 * 58.58503 * 23 16 15 40 40 H 1.09001 * 109.50153 * 178.64977 * 23 16 15 41 41 H 1.08996 * 109.53610 * 6.53286 * 24 13 11 42 42 H 1.09002 * 109.68003 * 246.22753 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.6999 7 6 2.0103 -1.2019 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5730 -3.2324 -0.0021 12 8 6.3441 -2.2962 -0.0035 13 7 6.0457 -4.4946 -0.0016 14 6 7.4922 -4.7523 -0.0021 15 6 7.8294 -5.6851 -1.1696 16 6 6.9691 -6.9472 -1.0737 17 7 7.3123 -7.8562 -2.1702 18 6 7.8305 -9.2169 -1.9864 19 6 7.6249 -9.9216 -3.3477 20 6 7.6301 -8.7231 -4.3247 21 6 7.1983 -7.5491 -3.4739 22 8 6.8068 -6.4853 -3.9053 23 6 5.4899 -6.5670 -1.1710 24 6 5.1262 -5.6441 -0.0030 25 1 -0.4850 0.8400 0.0004 26 1 3.6433 -3.4317 -0.8906 27 1 3.6441 -3.4313 0.8894 28 1 7.7797 -5.2242 0.9375 29 1 8.0308 -3.8119 -0.1185 30 1 7.6257 -5.1768 -2.1120 31 1 8.8835 -5.9590 -1.1237 32 1 7.1550 -7.4419 -0.1204 33 1 8.8897 -9.1859 -1.7309 34 1 7.2688 -9.7324 -1.2074 35 1 6.6702 -10.4466 -3.3795 36 1 8.4496 -10.6017 -3.5604 37 1 6.9201 -8.8884 -5.1351 38 1 8.6310 -8.5576 -4.7234 39 1 5.3083 -6.0503 -2.1135 40 1 4.8788 -7.4685 -1.1268 41 1 4.1017 -5.2912 -0.1213 42 1 5.2186 -6.1893 0.9363 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363484794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:18 Heat of formation + Delta-G solvation = -68.054474 kcal Electronic energy + Delta-G solvation = -23857.266357 eV Core-core repulsion = 20349.348049 eV Total energy + Delta-G solvation = -3507.918308 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99278 -39.65096 -37.19269 -36.54248 -33.77813 -32.40661 -31.68153 -30.54442 -28.89353 -27.91647 -25.61200 -25.02115 -23.39232 -22.36895 -21.65908 -19.69320 -18.85112 -17.69975 -17.19609 -16.94386 -16.44067 -15.69006 -15.49930 -15.27381 -14.92197 -14.38800 -14.32166 -14.07251 -14.02192 -13.71290 -13.52179 -13.27889 -13.14014 -12.94458 -12.73467 -12.46066 -12.23170 -11.92547 -11.85350 -11.56733 -11.32402 -11.23191 -11.08248 -10.97592 -10.92701 -10.54952 -9.85584 -9.82476 -9.44344 -8.98441 -8.97031 -8.59962 -8.44961 -6.87946 -6.25768 -3.97041 2.35494 2.60222 2.74476 3.00015 3.22416 3.36810 3.53839 3.62227 3.95277 4.02945 4.34922 4.36373 4.45442 4.50945 4.61538 4.71132 4.80309 4.88870 4.98851 5.07016 5.09844 5.12982 5.13441 5.24719 5.26298 5.32855 5.36859 5.43955 5.50741 5.61879 5.62412 5.79175 5.86540 5.98906 6.03344 6.03722 6.36175 6.57895 6.85557 7.48611 7.94712 7.97392 8.44583 8.47990 9.20657 10.83520 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.026827 B = 0.002884 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.482519 B = 9707.908346 C =10008.698701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.519 4.519 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.121 4.121 11 C 0.536 3.464 12 O -0.519 6.519 13 N -0.619 5.619 14 C 0.119 3.881 15 C -0.148 4.148 16 C 0.163 3.837 17 N -0.620 5.620 18 C 0.102 3.898 19 C -0.132 4.132 20 C -0.157 4.157 21 C 0.514 3.486 22 O -0.520 6.520 23 C -0.150 4.150 24 C 0.113 3.887 25 H 0.270 0.730 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.365 -25.099 -2.678 30.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.667 4.667 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.272 4.272 11 C 0.324 3.676 12 O -0.393 6.393 13 N -0.355 5.355 14 C -0.005 4.005 15 C -0.187 4.187 16 C 0.060 3.940 17 N -0.354 5.354 18 C -0.021 4.021 19 C -0.169 4.169 20 C -0.198 4.198 21 C 0.301 3.699 22 O -0.396 6.396 23 C -0.189 4.189 24 C -0.011 4.011 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 18.104 -22.981 -2.843 29.394 hybrid contribution -0.811 -0.587 -0.028 1.002 sum 17.293 -23.568 -2.871 29.373 Atomic orbital electron populations 1.69937 1.05910 1.27737 1.48217 1.24707 0.94448 0.98961 0.93196 0.86734 0.81897 0.83264 0.79960 1.19199 1.19970 1.15906 1.22310 0.88253 0.97514 1.58631 0.89412 1.84792 1.09278 1.00198 1.97396 1.23306 0.94135 1.04184 1.05555 1.20278 0.90645 0.81780 0.74917 1.90684 1.58749 1.41653 1.48248 1.48134 1.06416 1.05688 1.75284 1.21446 0.81542 1.00492 0.97012 1.22333 0.99424 0.95807 1.01156 1.20959 0.94695 0.89567 0.88741 1.48476 1.65292 1.15302 1.06373 1.22130 0.99467 0.82008 0.98526 1.22621 1.03797 0.97043 0.93486 1.22356 1.04439 0.93971 0.98998 1.20914 0.77083 0.88766 0.83135 1.90775 1.46046 1.26346 1.76383 1.22346 0.95329 1.00221 1.01001 1.21729 0.94723 0.86914 0.97732 0.91968 0.88526 0.88506 0.91707 0.88538 0.89661 0.90820 0.89297 0.91099 0.90341 0.89896 0.89233 0.88104 0.87940 0.89546 0.90524 0.88739 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.01 13.97 55.49 0.78 -26.24 16 2 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 3 Si 0.86 22.27 27.74 -169.99 -4.71 17.55 16 4 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.24 -6.10 6.74 56.52 0.38 -5.72 16 7 C -0.52 -15.28 10.04 30.94 0.31 -14.97 16 8 H 0.09 2.68 8.03 -52.48 -0.42 2.26 16 9 S -0.14 -3.75 18.55 -107.50 -1.99 -5.75 16 10 C -0.12 -2.47 4.51 36.00 0.16 -2.31 16 11 C 0.54 10.25 7.72 -10.99 -0.08 10.16 16 12 O -0.52 -11.77 15.27 5.55 0.08 -11.69 16 13 N -0.62 -8.86 2.98 -172.52 -0.51 -9.37 16 14 C 0.12 1.43 6.42 -3.71 -0.02 1.40 16 15 C -0.15 -1.59 5.34 -26.61 -0.14 -1.73 16 16 C 0.16 1.45 2.70 -67.89 -0.18 1.26 16 17 N -0.62 -5.08 2.83 -164.69 -0.47 -5.54 16 18 C 0.10 0.44 7.31 -3.03 -0.02 0.42 16 19 C -0.13 -0.45 7.19 -25.00 -0.18 -0.63 16 20 C -0.16 -0.97 6.86 -26.74 -0.18 -1.15 16 21 C 0.51 5.42 7.42 -10.86 -0.08 5.34 16 22 O -0.52 -8.07 15.16 5.55 0.08 -7.99 16 23 C -0.15 -1.55 5.35 -26.59 -0.14 -1.69 16 24 C 0.11 1.24 6.35 -3.53 -0.02 1.22 16 25 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.10 1.88 7.70 -51.92 -0.40 1.48 16 27 H 0.10 1.81 7.95 -51.92 -0.41 1.40 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 1.36 7.00 -51.93 -0.36 1.00 16 30 H 0.08 1.23 6.82 -51.93 -0.35 0.88 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.59 8.07 -51.93 -0.42 0.17 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 1.20 6.85 -51.93 -0.36 0.84 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.09 5.97 -51.93 -0.31 0.78 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -37.25 348.29 -8.60 -45.86 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.42 Total: -2.15 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.69 Total: 0.07 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: -0.21 Total: -41.15 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.17 Total: -19.68 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -1.99 Total: -5.75 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.25 -8.60 -45.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363484794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.199 kcal (2) G-P(sol) polarization free energy of solvation -37.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds