Wall clock time and date at job start Fri Apr 10 2020 18:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99966 * 2 1 4 4 H 1.48498 * 109.47091 * 270.00669 * 3 2 1 5 5 H 1.48506 * 109.47183 * 30.00250 * 3 2 1 6 6 H 1.48500 * 109.47195 * 150.00657 * 3 2 1 7 7 C 1.38791 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99898 * 359.97438 * 7 2 1 9 9 S 1.76207 * 120.00207 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99893 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46759 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00306 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00030 * 179.97438 * 11 10 9 14 14 C 1.46926 * 120.63336 * 180.02562 * 13 11 10 15 15 C 1.53191 * 108.89109 * 233.68039 * 14 13 11 16 16 C 1.53035 * 109.31327 * 305.29292 * 15 14 13 17 17 N 1.46497 * 109.46029 * 181.37638 * 16 15 14 18 18 C 1.46764 * 124.35320 * 119.72657 * 17 16 15 19 19 C 1.54657 * 105.38445 * 162.85270 * 18 17 16 20 20 C 1.54629 * 101.68688 * 25.76738 * 19 18 17 21 21 C 1.34426 * 124.35144 * 300.02068 * 17 16 15 22 22 O 1.21286 * 124.93699 * 0.43451 * 21 17 16 23 23 C 1.53038 * 109.54175 * 61.36680 * 16 15 14 24 24 C 1.47207 * 120.81118 * 0.14238 * 13 11 10 25 25 H 0.96996 * 120.00109 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47317 * 59.99808 * 10 9 7 27 27 H 1.09000 * 109.47045 * 299.99232 * 10 9 7 28 28 H 1.09002 * 109.58861 * 113.82042 * 14 13 11 29 29 H 1.08996 * 109.58519 * 353.53933 * 14 13 11 30 30 H 1.09003 * 109.49975 * 65.24379 * 15 14 13 31 31 H 1.09004 * 109.49655 * 185.34207 * 15 14 13 32 32 H 1.09004 * 109.45942 * 301.34050 * 16 15 14 33 33 H 1.09002 * 110.24575 * 281.97791 * 18 17 16 34 34 H 1.08997 * 110.24600 * 43.97733 * 18 17 16 35 35 H 1.09000 * 111.19882 * 267.59280 * 19 18 17 36 36 H 1.08998 * 110.82575 * 143.77194 * 19 18 17 37 37 H 1.08999 * 110.48491 * 216.31140 * 20 19 18 38 38 H 1.09001 * 110.60279 * 93.71855 * 20 19 18 39 39 H 1.09002 * 109.49557 * 58.58503 * 23 16 15 40 40 H 1.09001 * 109.50153 * 178.64977 * 23 16 15 41 41 H 1.08996 * 109.53610 * 6.53286 * 24 13 11 42 42 H 1.09002 * 109.68003 * 246.22753 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.6999 7 6 2.0103 -1.2019 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5730 -3.2324 -0.0021 12 8 6.3441 -2.2962 -0.0035 13 7 6.0457 -4.4946 -0.0016 14 6 7.4922 -4.7523 -0.0021 15 6 7.8294 -5.6851 -1.1696 16 6 6.9691 -6.9472 -1.0737 17 7 7.3123 -7.8562 -2.1702 18 6 7.8305 -9.2169 -1.9864 19 6 7.6249 -9.9216 -3.3477 20 6 7.6301 -8.7231 -4.3247 21 6 7.1983 -7.5491 -3.4739 22 8 6.8068 -6.4853 -3.9053 23 6 5.4899 -6.5670 -1.1710 24 6 5.1262 -5.6441 -0.0030 25 1 -0.4850 0.8400 0.0004 26 1 3.6433 -3.4317 -0.8906 27 1 3.6441 -3.4313 0.8894 28 1 7.7797 -5.2242 0.9375 29 1 8.0308 -3.8119 -0.1185 30 1 7.6257 -5.1768 -2.1120 31 1 8.8835 -5.9590 -1.1237 32 1 7.1550 -7.4419 -0.1204 33 1 8.8897 -9.1859 -1.7309 34 1 7.2688 -9.7324 -1.2074 35 1 6.6702 -10.4466 -3.3795 36 1 8.4496 -10.6017 -3.5604 37 1 6.9201 -8.8884 -5.1351 38 1 8.6310 -8.5576 -4.7234 39 1 5.3083 -6.0503 -2.1135 40 1 4.8788 -7.4685 -1.1268 41 1 4.1017 -5.2912 -0.1213 42 1 5.2186 -6.1893 0.9363 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363484794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:17 Heat of formation + Delta-G solvation = -94.158464 kcal Electronic energy + Delta-G solvation = -23858.398311 eV Core-core repulsion = 20349.348049 eV Total energy + Delta-G solvation = -3509.050262 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77024 -40.85746 -38.34890 -37.31016 -34.74252 -34.67540 -32.70384 -31.42220 -30.24825 -28.39515 -27.89126 -25.97500 -24.34777 -22.86552 -22.54273 -20.77739 -20.00821 -19.45991 -18.37632 -17.59432 -17.36086 -17.18515 -16.88924 -16.73418 -16.13695 -15.77398 -15.28434 -15.10695 -14.94478 -14.90606 -14.65600 -14.51272 -14.14331 -13.89274 -13.69200 -13.54606 -13.40018 -13.33784 -13.04760 -12.84784 -12.67326 -12.34011 -12.29377 -11.99960 -11.88725 -11.81421 -11.70613 -11.19950 -10.98321 -10.65539 -10.56381 -9.78320 -9.65364 -9.04045 -8.54176 -6.25621 0.93677 1.29290 1.42971 1.46116 1.51705 1.59909 2.00016 2.06844 2.22966 2.64798 2.83927 3.39968 3.47244 3.65723 3.72809 3.83488 3.96087 4.01072 4.10708 4.13149 4.24471 4.26354 4.32845 4.36208 4.51151 4.59421 4.67193 4.74689 4.76841 4.77714 4.89634 4.91753 5.08423 5.12564 5.20076 5.26499 5.48607 5.68329 5.70038 6.08298 6.16803 6.23169 6.90860 7.03183 7.21980 8.58365 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.026827 B = 0.002884 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.482519 B = 9707.908346 C =10008.698701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.255 1.255 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.062 0.938 9 S -0.178 6.178 10 C -0.105 4.105 11 C 0.533 3.467 12 O -0.564 6.564 13 N -0.607 5.607 14 C 0.117 3.883 15 C -0.139 4.139 16 C 0.162 3.838 17 N -0.616 5.616 18 C 0.096 3.904 19 C -0.120 4.120 20 C -0.155 4.155 21 C 0.496 3.504 22 O -0.586 6.586 23 C -0.143 4.143 24 C 0.107 3.893 25 H 0.278 0.722 26 H 0.102 0.898 27 H 0.117 0.883 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.095 0.905 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.041 0.959 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.210 -28.297 -1.314 34.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.179 1.179 6 H -0.161 1.161 7 C -0.675 4.675 8 H 0.081 0.919 9 S 0.049 5.951 10 C -0.256 4.256 11 C 0.320 3.680 12 O -0.443 6.443 13 N -0.341 5.341 14 C -0.005 4.005 15 C -0.178 4.178 16 C 0.060 3.940 17 N -0.349 5.349 18 C -0.025 4.025 19 C -0.157 4.157 20 C -0.195 4.195 21 C 0.285 3.715 22 O -0.466 6.466 23 C -0.182 4.182 24 C -0.015 4.015 25 H 0.087 0.913 26 H 0.120 0.880 27 H 0.135 0.865 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.113 0.887 32 H 0.149 0.851 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.131 0.869 39 H 0.060 0.940 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 19.960 -26.284 -1.457 33.036 hybrid contribution -1.349 0.194 -0.481 1.445 sum 18.611 -26.090 -1.938 32.106 Atomic orbital electron populations 1.70007 1.07223 1.29075 1.49076 1.25548 0.95298 1.02211 0.92840 0.85878 0.80737 0.79664 0.80156 1.18942 1.17923 1.16098 1.22424 0.89984 0.96752 1.58366 0.91939 1.84717 1.06767 1.06094 1.97551 1.23265 0.95969 0.99557 1.06810 1.20023 0.89539 0.83113 0.75275 1.90663 1.59264 1.43425 1.50968 1.48183 1.08216 1.04864 1.72880 1.21652 0.79501 0.99960 0.99436 1.22215 1.01190 0.96203 0.98162 1.21001 0.92945 0.89300 0.90775 1.48615 1.64156 1.16701 1.05393 1.22475 1.00718 0.79686 0.99629 1.22665 1.05298 0.95985 0.91787 1.22395 1.04667 0.93405 0.99027 1.21768 0.76222 0.88898 0.84588 1.90742 1.49031 1.29172 1.77685 1.22259 0.97199 1.00377 0.98369 1.22047 0.93473 0.85963 1.00050 0.91279 0.87984 0.86479 0.87601 0.91222 0.94298 0.88654 0.85112 0.89302 0.88085 0.89344 0.86536 0.88348 0.86902 0.94016 0.88181 0.89709 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.93 13.97 21.65 0.30 -56.63 16 2 C 0.05 2.81 5.50 84.86 0.47 3.27 16 3 Si 0.91 46.43 27.74 68.60 1.90 48.33 16 4 H -0.26 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.24 -12.05 6.74 99.48 0.67 -11.38 16 7 C -0.53 -31.78 10.04 67.95 0.68 -31.10 16 8 H 0.06 3.95 8.03 -2.91 -0.02 3.92 16 9 S -0.18 -9.51 18.55 -56.49 -1.05 -10.55 16 10 C -0.11 -4.34 4.51 71.23 0.32 -4.02 16 11 C 0.53 20.55 7.72 87.66 0.68 21.23 16 12 O -0.56 -26.29 15.27 -3.05 -0.05 -26.33 16 13 N -0.61 -16.74 2.98 -818.10 -2.44 -19.18 16 14 C 0.12 2.63 6.42 86.36 0.55 3.18 16 15 C -0.14 -2.81 5.34 30.67 0.16 -2.65 16 16 C 0.16 2.41 2.70 45.02 0.12 2.53 16 17 N -0.62 -8.52 2.83 -793.54 -2.25 -10.76 16 18 C 0.10 0.39 7.31 86.89 0.64 1.03 16 19 C -0.12 -0.35 7.19 31.71 0.23 -0.12 16 20 C -0.15 -1.65 6.86 30.59 0.21 -1.44 16 21 C 0.50 10.32 7.42 87.90 0.65 10.97 16 22 O -0.59 -19.44 15.16 -3.05 -0.05 -19.49 16 23 C -0.14 -2.71 5.35 30.69 0.16 -2.55 16 24 C 0.11 2.10 6.35 86.32 0.55 2.65 16 25 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 26 H 0.10 4.07 7.70 -2.40 -0.02 4.06 16 27 H 0.12 4.32 7.95 -2.40 -0.02 4.30 16 28 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.98 7.00 -2.39 -0.02 1.96 16 30 H 0.04 1.18 6.82 -2.39 -0.02 1.16 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.13 0.95 8.07 -2.39 -0.02 0.93 16 33 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.04 1.20 6.85 -2.39 -0.02 1.18 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.85 5.97 -2.39 -0.01 1.83 16 42 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -87.22 348.29 2.78 -84.44 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 0.98 Total: 7.20 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 5.42 Total: 2.97 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -4.38 Total: -86.57 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -0.09 Total: -45.82 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.90 Total: 48.33 kcal Atomic # 16 Polarization: -9.51 SS G_CDS: -1.05 Total: -10.55 kcal Total: -87.22 2.78 -84.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363484794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.714 kcal (2) G-P(sol) polarization free energy of solvation -87.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds