Wall clock time and date at job start Fri Apr 10 2020 18:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47116 * 273.49081 * 3 2 1 5 5 C 1.37095 * 120.00164 * 266.14928 * 4 3 2 6 6 H 1.07999 * 120.00292 * 193.84060 * 5 4 3 7 7 C 1.38949 * 119.99764 * 13.84952 * 5 4 3 8 8 N 1.31410 * 120.00218 * 21.29461 * 7 5 4 9 9 Si 1.86802 * 119.99639 * 201.29230 * 7 5 4 10 10 H 1.48503 * 109.46897 * 89.99960 * 9 7 5 11 11 H 1.48504 * 109.47091 * 209.99576 * 9 7 5 12 12 H 1.48499 * 109.47296 * 329.99667 * 9 7 5 13 13 C 1.34779 * 120.00004 * 86.15250 * 4 3 2 14 14 O 1.21287 * 120.00314 * 179.97438 * 13 4 3 15 15 C 1.50699 * 119.99720 * 359.97438 * 13 4 3 16 16 H 1.09008 * 110.26784 * 42.06276 * 15 13 4 17 17 C 1.53737 * 110.29989 * 279.99883 * 15 13 4 18 18 C 1.51221 * 104.58297 * 240.97423 * 17 15 13 19 19 C 1.38188 * 130.97075 * 180.02562 * 18 17 15 20 20 C 1.38219 * 120.15131 * 179.97438 * 19 18 17 21 21 C 1.38295 * 119.82586 * 0.02562 * 20 19 18 22 22 C 1.37837 * 120.22464 * 0.02562 * 21 20 19 23 23 C 1.38558 * 108.55786 * 359.97438 * 18 17 15 24 24 N 1.39833 * 111.62054 * 359.97438 * 23 18 17 25 25 C 1.34769 * 124.97971 * 180.02562 * 24 23 18 26 26 C 1.50702 * 120.00222 * 174.90135 * 25 24 23 27 27 O 1.21298 * 120.00131 * 354.90276 * 25 24 23 28 28 H 4.40642 * 5.51423 * 179.97438 * 4 1 2 29 29 H 1.08998 * 109.46885 * 153.48902 * 3 2 1 30 30 H 1.09000 * 109.46926 * 33.49137 * 3 2 1 31 31 H 0.97004 * 119.99954 * 179.97438 * 8 7 5 32 32 H 1.09002 * 110.41332 * 122.19710 * 17 15 13 33 33 H 1.08998 * 110.51556 * 359.79818 * 17 15 13 34 34 H 1.08000 * 119.92313 * 359.95010 * 19 18 17 35 35 H 1.07996 * 120.09157 * 179.74464 * 20 19 18 36 36 H 1.08007 * 119.88831 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.85889 * 179.97438 * 22 21 20 38 38 H 1.08992 * 109.46914 * 354.81217 * 26 25 24 39 39 H 1.09003 * 109.47050 * 114.81153 * 26 25 24 40 40 H 1.09002 * 109.47104 * 234.81384 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0832 1.3786 5 6 3.4375 1.0616 2.0693 6 1 4.0010 1.0043 2.9888 7 6 3.0196 2.2956 1.5864 8 7 2.0151 2.3648 0.7419 9 14 3.8857 3.8562 2.1375 10 1 5.0083 4.1526 1.2116 11 1 2.9231 4.9869 2.1263 12 1 4.4143 3.6697 3.5127 13 6 3.2857 -1.2859 1.9679 14 8 3.6905 -1.3554 3.1091 15 6 2.9520 -2.5442 1.2088 16 1 3.3172 -2.4751 0.1841 17 6 1.4338 -2.7863 1.2187 18 6 1.2650 -4.1177 1.9156 19 6 0.1296 -4.8464 2.2145 20 6 0.2354 -6.0591 2.8692 21 6 1.4813 -6.5421 3.2253 22 6 2.6165 -5.8182 2.9301 23 6 2.5180 -4.5934 2.2670 24 7 3.5317 -3.7131 1.8760 25 6 4.8487 -3.9102 2.0832 26 6 5.8542 -2.9431 1.5135 27 8 5.2247 -4.8662 2.7283 28 1 -1.0500 0.0002 0.0000 29 1 3.0089 0.9204 -0.4587 30 1 3.0097 -0.8562 -0.5671 31 1 1.7231 3.2263 0.4051 32 1 1.0506 -2.8392 0.1996 33 1 0.9250 -1.9989 1.7749 34 1 -0.8426 -4.4672 1.9363 35 1 -0.6529 -6.6258 3.1060 36 1 1.5651 -7.4895 3.7373 37 1 3.5865 -6.2009 3.2114 38 1 5.3408 -2.2085 0.8933 39 1 6.3705 -2.4341 2.3275 40 1 6.5788 -3.4872 0.9076 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374261767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:32 Heat of formation + Delta-G solvation = 46.624385 kcal Electronic energy + Delta-G solvation = -26383.834051 eV Core-core repulsion = 22745.444640 eV Total energy + Delta-G solvation = -3638.389410 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.20292 -38.65866 -38.37704 -36.01736 -35.19436 -32.51486 -31.93954 -31.41655 -30.75394 -29.09768 -28.47074 -26.67455 -25.14621 -23.40121 -23.02594 -21.19322 -20.08391 -18.87449 -18.06101 -17.11655 -17.00975 -16.69400 -15.99368 -15.61656 -15.19562 -14.63693 -14.48773 -14.34459 -14.02865 -13.95836 -13.60647 -13.19589 -12.82641 -12.73490 -12.50581 -12.35565 -12.24252 -12.11080 -11.97646 -11.66994 -11.63218 -11.32136 -11.12551 -10.78711 -10.60368 -10.43415 -10.28116 -9.64402 -9.47221 -9.46479 -9.04068 -8.65806 -8.58697 -8.08807 -7.53633 -6.50071 -4.01830 1.46042 1.57469 2.77921 2.98747 3.06583 3.17515 3.21661 3.43383 3.70896 3.89538 3.98117 4.06608 4.50320 4.60054 4.76472 4.92270 4.96944 5.16331 5.20425 5.27593 5.30816 5.42493 5.47664 5.54170 5.61773 5.65973 5.79195 5.94512 6.06336 6.08200 6.14503 6.24669 6.44966 6.60353 6.62800 6.64023 6.71251 6.89110 7.21474 7.40972 7.54747 7.83023 8.22491 8.26056 8.66480 8.93713 9.14377 9.65908 10.49229 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.017122 B = 0.005020 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.942619 B = 5576.710792 C = 6588.011107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.115 4.115 3 C 0.225 3.775 4 N -0.428 5.428 5 C -0.315 4.315 6 H 0.108 0.892 7 C 0.034 3.966 8 N -0.859 5.859 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.433 3.567 14 O -0.567 6.567 15 C 0.118 3.882 16 H 0.100 0.900 17 C -0.069 4.069 18 C -0.132 4.132 19 C -0.080 4.080 20 C -0.149 4.149 21 C -0.099 4.099 22 C -0.134 4.134 23 C 0.157 3.843 24 N -0.532 5.532 25 C 0.540 3.460 26 C -0.164 4.164 27 O -0.535 6.535 28 H 0.200 0.800 29 H 0.118 0.882 30 H 0.061 0.939 31 H 0.271 0.729 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.136 0.864 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.179 -9.292 -5.341 10.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.116 4.116 3 C 0.102 3.898 4 N -0.146 5.146 5 C -0.442 4.442 6 H 0.125 0.875 7 C -0.171 4.171 8 N -0.496 5.496 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.220 3.780 14 O -0.450 6.450 15 C 0.011 3.989 16 H 0.118 0.882 17 C -0.107 4.107 18 C -0.134 4.134 19 C -0.098 4.098 20 C -0.168 4.168 21 C -0.118 4.118 22 C -0.155 4.155 23 C 0.061 3.939 24 N -0.253 5.253 25 C 0.332 3.668 26 C -0.224 4.224 27 O -0.412 6.412 28 H 0.217 0.783 29 H 0.135 0.865 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.154 0.846 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.640 -9.583 -4.544 10.732 hybrid contribution -0.125 1.217 0.168 1.234 sum -1.765 -8.366 -4.376 9.605 Atomic orbital electron populations 1.24286 0.95353 1.06006 1.01620 1.23005 0.94154 0.95759 0.98728 1.18430 0.84673 1.02151 0.84561 1.43748 1.55222 1.04861 1.10803 1.19726 1.33277 0.82086 1.09157 0.87472 1.25293 0.95089 0.99464 0.97207 1.70074 1.21451 1.26297 1.31783 0.85960 0.79065 0.80489 0.79479 1.20158 1.20994 1.19341 1.19878 0.86420 0.84124 0.87620 1.90593 1.50682 1.85895 1.17828 1.21701 0.94733 0.85873 0.96604 0.88210 1.21070 0.92947 0.94928 1.01760 1.20097 0.92640 0.97248 1.03460 1.20327 0.96869 0.94239 0.98377 1.20931 0.97438 0.96708 1.01688 1.20858 0.91956 0.99452 0.99491 1.20902 1.00217 0.93515 1.00825 1.18410 0.87615 0.91462 0.96377 1.45704 1.05137 1.19078 1.55411 1.20683 0.81471 0.85866 0.78804 1.21844 0.98249 0.98908 1.03358 1.90629 1.79073 1.32050 1.39456 0.78326 0.86460 0.92148 0.91860 0.88679 0.88315 0.85850 0.85955 0.85844 0.84576 0.90407 0.87867 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.59 19.04 29.55 0.56 -4.03 16 2 C -0.11 -2.25 9.46 -37.12 -0.35 -2.60 16 3 C 0.22 4.37 4.91 -6.83 -0.03 4.33 16 4 N -0.43 -9.70 2.60 -117.94 -0.31 -10.00 16 5 C -0.32 -7.98 9.39 -14.93 -0.14 -8.12 16 6 H 0.11 2.92 7.33 -52.49 -0.38 2.53 16 7 C 0.03 0.83 4.92 -17.47 -0.09 0.74 16 8 N -0.86 -20.62 9.26 55.50 0.51 -20.10 16 9 Si 0.92 19.24 29.60 -169.99 -5.03 14.21 16 10 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 13 C 0.43 9.62 5.10 -10.99 -0.06 9.56 16 14 O -0.57 -14.92 15.50 5.55 0.09 -14.84 16 15 C 0.12 2.11 2.06 -68.68 -0.14 1.97 16 16 H 0.10 1.49 6.15 -51.92 -0.32 1.17 16 17 C -0.07 -1.15 4.96 -27.24 -0.14 -1.29 16 18 C -0.13 -2.19 6.23 -104.27 -0.65 -2.83 16 19 C -0.08 -1.11 10.04 -39.61 -0.40 -1.51 16 20 C -0.15 -1.90 10.06 -39.57 -0.40 -2.30 16 21 C -0.10 -1.36 10.02 -39.71 -0.40 -1.76 16 22 C -0.13 -2.27 9.46 -39.21 -0.37 -2.64 16 23 C 0.16 2.88 6.62 -83.57 -0.55 2.33 16 24 N -0.53 -10.04 2.60 -107.07 -0.28 -10.32 16 25 C 0.54 10.26 7.24 -10.99 -0.08 10.18 16 26 C -0.16 -2.54 9.51 36.01 0.34 -2.20 16 27 O -0.54 -11.20 15.29 5.54 0.08 -11.12 16 28 H 0.20 2.92 7.80 -54.09 -0.42 2.50 16 29 H 0.12 2.43 6.30 -51.93 -0.33 2.11 16 30 H 0.06 0.94 6.17 -51.93 -0.32 0.62 16 31 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 32 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 33 H 0.10 1.86 7.01 -51.93 -0.36 1.50 16 34 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 37 H 0.14 2.42 6.30 -52.48 -0.33 2.09 16 38 H 0.08 1.18 5.81 -51.93 -0.30 0.88 16 39 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 334.91 15.07 5.05 5.05 Total: -1.00 -31.30 334.91 -7.21 -38.51 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -4.44 Total: 8.79 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -2.88 Total: -0.17 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: -0.07 Total: -40.43 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: 0.17 Total: -25.95 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.30 -7.21 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374261767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.133 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds