Wall clock time and date at job start Fri Apr 10 2020 18:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47116 * 273.49081 * 3 2 1 5 5 C 1.37095 * 120.00164 * 266.14928 * 4 3 2 6 6 H 1.07999 * 120.00292 * 193.84060 * 5 4 3 7 7 C 1.38949 * 119.99764 * 13.84952 * 5 4 3 8 8 N 1.31410 * 120.00218 * 21.29461 * 7 5 4 9 9 Si 1.86802 * 119.99639 * 201.29230 * 7 5 4 10 10 H 1.48503 * 109.46897 * 89.99960 * 9 7 5 11 11 H 1.48504 * 109.47091 * 209.99576 * 9 7 5 12 12 H 1.48499 * 109.47296 * 329.99667 * 9 7 5 13 13 C 1.34779 * 120.00004 * 86.15250 * 4 3 2 14 14 O 1.21287 * 120.00314 * 179.97438 * 13 4 3 15 15 C 1.50699 * 119.99720 * 359.97438 * 13 4 3 16 16 H 1.09008 * 110.26784 * 42.06276 * 15 13 4 17 17 C 1.53737 * 110.29989 * 279.99883 * 15 13 4 18 18 C 1.51221 * 104.58297 * 240.97423 * 17 15 13 19 19 C 1.38188 * 130.97075 * 180.02562 * 18 17 15 20 20 C 1.38219 * 120.15131 * 179.97438 * 19 18 17 21 21 C 1.38295 * 119.82586 * 0.02562 * 20 19 18 22 22 C 1.37837 * 120.22464 * 0.02562 * 21 20 19 23 23 C 1.38558 * 108.55786 * 359.97438 * 18 17 15 24 24 N 1.39833 * 111.62054 * 359.97438 * 23 18 17 25 25 C 1.34769 * 124.97971 * 180.02562 * 24 23 18 26 26 C 1.50702 * 120.00222 * 174.90135 * 25 24 23 27 27 O 1.21298 * 120.00131 * 354.90276 * 25 24 23 28 28 H 4.40642 * 5.51423 * 179.97438 * 4 1 2 29 29 H 1.08998 * 109.46885 * 153.48902 * 3 2 1 30 30 H 1.09000 * 109.46926 * 33.49137 * 3 2 1 31 31 H 0.97004 * 119.99954 * 179.97438 * 8 7 5 32 32 H 1.09002 * 110.41332 * 122.19710 * 17 15 13 33 33 H 1.08998 * 110.51556 * 359.79818 * 17 15 13 34 34 H 1.08000 * 119.92313 * 359.95010 * 19 18 17 35 35 H 1.07996 * 120.09157 * 179.74464 * 20 19 18 36 36 H 1.08007 * 119.88831 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.85889 * 179.97438 * 22 21 20 38 38 H 1.08992 * 109.46914 * 354.81217 * 26 25 24 39 39 H 1.09003 * 109.47050 * 114.81153 * 26 25 24 40 40 H 1.09002 * 109.47104 * 234.81384 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0832 1.3786 5 6 3.4375 1.0616 2.0693 6 1 4.0010 1.0043 2.9888 7 6 3.0196 2.2956 1.5864 8 7 2.0151 2.3648 0.7419 9 14 3.8857 3.8562 2.1375 10 1 5.0083 4.1526 1.2116 11 1 2.9231 4.9869 2.1263 12 1 4.4143 3.6697 3.5127 13 6 3.2857 -1.2859 1.9679 14 8 3.6905 -1.3554 3.1091 15 6 2.9520 -2.5442 1.2088 16 1 3.3172 -2.4751 0.1841 17 6 1.4338 -2.7863 1.2187 18 6 1.2650 -4.1177 1.9156 19 6 0.1296 -4.8464 2.2145 20 6 0.2354 -6.0591 2.8692 21 6 1.4813 -6.5421 3.2253 22 6 2.6165 -5.8182 2.9301 23 6 2.5180 -4.5934 2.2670 24 7 3.5317 -3.7131 1.8760 25 6 4.8487 -3.9102 2.0832 26 6 5.8542 -2.9431 1.5135 27 8 5.2247 -4.8662 2.7283 28 1 -1.0500 0.0002 0.0000 29 1 3.0089 0.9204 -0.4587 30 1 3.0097 -0.8562 -0.5671 31 1 1.7231 3.2263 0.4051 32 1 1.0506 -2.8392 0.1996 33 1 0.9250 -1.9989 1.7749 34 1 -0.8426 -4.4672 1.9363 35 1 -0.6529 -6.6258 3.1060 36 1 1.5651 -7.4895 3.7373 37 1 3.5865 -6.2009 3.2114 38 1 5.3408 -2.2085 0.8933 39 1 6.3705 -2.4341 2.3275 40 1 6.5788 -3.4872 0.9076 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374261767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:31 Heat of formation + Delta-G solvation = 28.891255 kcal Electronic energy + Delta-G solvation = -26384.603017 eV Core-core repulsion = 22745.444640 eV Total energy + Delta-G solvation = -3639.158377 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.57408 -40.29340 -39.70876 -37.46763 -36.86368 -34.15182 -33.32652 -33.02679 -32.01157 -30.43151 -29.70568 -28.27773 -26.79406 -24.87088 -24.29331 -22.38791 -21.58325 -20.30960 -19.69790 -18.65721 -18.43587 -18.23671 -17.39296 -16.90797 -16.73070 -16.20797 -16.01860 -15.77588 -15.55312 -15.21028 -15.08231 -14.47071 -14.34773 -14.19523 -13.88907 -13.73732 -13.58474 -13.47192 -13.42125 -13.23261 -12.97113 -12.77045 -12.55615 -12.41948 -12.17067 -11.97292 -11.63401 -11.22171 -11.05565 -10.96236 -10.61380 -10.31453 -9.88442 -9.76249 -8.84456 -8.33691 -5.92895 0.25331 0.41155 1.33785 1.35772 1.45952 1.54657 1.68578 1.82141 2.15333 2.35707 2.45177 2.79572 2.99410 3.07253 3.23378 3.47244 3.62342 3.85269 3.93840 4.04511 4.08202 4.17953 4.18813 4.33945 4.46450 4.51177 4.60940 4.67956 4.69834 4.82351 4.85276 5.03969 5.07884 5.26185 5.43115 5.47151 5.50213 5.50405 5.58811 5.97286 6.07765 6.20864 6.41919 6.83439 7.10762 7.22137 7.35605 7.89679 8.62430 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.017122 B = 0.005020 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.942619 B = 5576.710792 C = 6588.011107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.151 4.151 3 C 0.225 3.775 4 N -0.433 5.433 5 C -0.349 4.349 6 H 0.074 0.926 7 C 0.012 3.988 8 N -0.862 5.862 9 Si 0.979 3.021 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.283 1.283 13 C 0.431 3.569 14 O -0.620 6.620 15 C 0.124 3.876 16 H 0.133 0.867 17 C -0.060 4.060 18 C -0.145 4.145 19 C -0.079 4.079 20 C -0.135 4.135 21 C -0.095 4.095 22 C -0.156 4.156 23 C 0.115 3.885 24 N -0.538 5.538 25 C 0.526 3.474 26 C -0.158 4.158 27 O -0.566 6.566 28 H 0.230 0.770 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.274 0.726 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.164 0.836 36 H 0.153 0.847 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.365 -9.978 -6.897 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.153 4.153 3 C 0.103 3.897 4 N -0.151 5.151 5 C -0.476 4.476 6 H 0.092 0.908 7 C -0.192 4.192 8 N -0.498 5.498 9 Si 0.803 3.197 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.209 1.209 13 C 0.219 3.781 14 O -0.507 6.507 15 C 0.018 3.982 16 H 0.151 0.849 17 C -0.097 4.097 18 C -0.147 4.147 19 C -0.097 4.097 20 C -0.154 4.154 21 C -0.113 4.113 22 C -0.177 4.177 23 C 0.021 3.979 24 N -0.259 5.259 25 C 0.319 3.681 26 C -0.217 4.217 27 O -0.446 6.446 28 H 0.247 0.753 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.171 0.829 35 H 0.181 0.819 36 H 0.171 0.829 37 H 0.134 0.866 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.864 -10.260 -6.153 12.572 hybrid contribution 0.433 1.385 0.702 1.612 sum -3.430 -8.875 -5.451 10.965 Atomic orbital electron populations 1.25066 0.96213 1.04449 0.99872 1.23166 0.94612 0.97221 1.00273 1.18525 0.85176 1.03135 0.82906 1.43862 1.54952 1.04328 1.11918 1.19516 1.34810 0.83991 1.09274 0.90847 1.25822 0.95238 1.01048 0.97133 1.70152 1.21237 1.26929 1.31527 0.85159 0.78486 0.77558 0.78466 1.18783 1.20384 1.20866 1.20567 0.84969 0.85263 0.87258 1.90554 1.52862 1.86885 1.20398 1.21722 0.96040 0.83378 0.97085 0.84941 1.21003 0.91397 0.94177 1.03148 1.20309 0.92903 0.97401 1.04135 1.20773 0.97213 0.94282 0.97470 1.21424 0.98310 0.96149 0.99475 1.21246 0.91389 1.00098 0.98616 1.20993 1.00725 0.93999 1.01939 1.18810 0.88307 0.92428 0.98394 1.45817 1.05342 1.19285 1.55483 1.21310 0.82189 0.85992 0.78584 1.21866 0.98103 0.98506 1.03207 1.90597 1.79609 1.33420 1.40961 0.75317 0.88076 0.88229 0.91548 0.85612 0.90816 0.82906 0.81862 0.82885 0.86561 0.90180 0.89067 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.01 19.04 74.32 1.42 -6.59 16 2 C -0.15 -5.68 9.46 31.13 0.29 -5.39 16 3 C 0.22 8.55 4.91 84.58 0.42 8.97 16 4 N -0.43 -19.99 2.60 -645.44 -1.67 -21.66 16 5 C -0.35 -18.25 9.39 84.04 0.79 -17.46 16 6 H 0.07 4.26 7.33 -2.91 -0.02 4.24 16 7 C 0.01 0.60 4.92 84.93 0.42 1.02 16 8 N -0.86 -40.92 9.26 21.66 0.20 -40.72 16 9 Si 0.98 39.72 29.60 68.60 2.03 41.75 16 10 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 11 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.43 19.66 5.10 87.66 0.45 20.11 16 14 O -0.62 -34.41 15.50 -3.05 -0.05 -34.46 16 15 C 0.12 4.42 2.06 44.48 0.09 4.51 16 16 H 0.13 3.73 6.15 -2.38 -0.01 3.72 16 17 C -0.06 -1.90 4.96 30.26 0.15 -1.75 16 18 C -0.14 -4.61 6.23 -19.63 -0.12 -4.73 16 19 C -0.08 -1.96 10.04 22.25 0.22 -1.74 16 20 C -0.14 -2.94 10.06 22.28 0.22 -2.71 16 21 C -0.10 -2.41 10.02 22.19 0.22 -2.19 16 22 C -0.16 -5.31 9.46 22.51 0.21 -5.10 16 23 C 0.12 4.25 6.62 38.28 0.25 4.50 16 24 N -0.54 -20.66 2.60 -611.04 -1.59 -22.25 16 25 C 0.53 20.69 7.24 87.66 0.63 21.33 16 26 C -0.16 -4.98 9.51 71.24 0.68 -4.31 16 27 O -0.57 -24.85 15.29 -3.09 -0.05 -24.89 16 28 H 0.23 5.90 7.80 -4.42 -0.03 5.87 16 29 H 0.10 4.16 6.30 -2.39 -0.02 4.14 16 30 H 0.10 2.89 6.17 -2.39 -0.01 2.88 16 31 H 0.27 12.39 8.31 -92.71 -0.77 11.62 16 32 H 0.13 3.14 8.09 -2.39 -0.02 3.12 16 33 H 0.07 2.74 7.01 -2.39 -0.02 2.72 16 34 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 36 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 37 H 0.12 4.35 6.30 -2.91 -0.02 4.33 16 38 H 0.08 2.44 5.81 -2.39 -0.01 2.43 16 39 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -72.07 334.91 6.29 -65.77 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 1.07 Total: 28.00 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 6.35 Total: 8.45 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -3.06 Total: -84.63 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -0.09 Total: -59.35 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -72.07 6.29 -65.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374261767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.666 kcal (2) G-P(sol) polarization free energy of solvation -72.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds