Wall clock time and date at job start Fri Apr 10 2020 18:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46702 * 2 1 4 4 N 1.46503 * 109.46634 * 180.02562 * 3 2 1 5 5 C 1.46758 * 124.34942 * 90.00402 * 4 3 2 6 6 C 1.54485 * 105.47216 * 196.98975 * 5 4 3 7 7 H 1.09000 * 110.96616 * 92.73733 * 6 5 4 8 8 C 1.50694 * 110.97100 * 216.46415 * 6 5 4 9 9 O 1.21299 * 120.00200 * 356.90777 * 8 6 5 10 10 N 1.34774 * 120.00292 * 176.91305 * 8 6 5 11 11 C 1.37105 * 119.99849 * 359.97438 * 10 8 6 12 12 H 1.08001 * 119.99594 * 345.97798 * 11 10 8 13 13 C 1.38952 * 119.99925 * 165.97877 * 11 10 8 14 14 N 1.31411 * 119.99823 * 334.68260 * 13 11 10 15 15 Si 1.86795 * 119.99645 * 154.68501 * 13 11 10 16 16 H 1.48498 * 109.47198 * 90.00193 * 15 13 11 17 17 H 1.48506 * 109.47075 * 210.00043 * 15 13 11 18 18 H 1.48498 * 109.47597 * 329.99895 * 15 13 11 19 19 C 1.46506 * 120.00393 * 180.02562 * 10 8 6 20 20 C 1.50695 * 109.46784 * 275.87469 * 19 10 8 21 21 O 1.20823 * 120.00418 * 359.97438 * 20 19 10 22 22 O 1.34232 * 119.99769 * 180.02562 * 20 19 10 23 23 C 1.45198 * 117.00168 * 179.97438 * 22 20 19 24 24 C 1.54632 * 101.79792 * 334.60107 * 6 5 4 25 25 C 1.34420 * 124.34612 * 269.97346 * 4 3 2 26 26 O 1.21279 * 124.94564 * 359.63868 * 25 4 3 27 27 H 1.08996 * 109.47474 * 60.00080 * 1 2 3 28 28 H 1.09008 * 109.46488 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47346 * 299.99611 * 1 2 3 30 30 H 1.08997 * 109.46948 * 240.00062 * 2 1 3 31 31 H 1.08996 * 109.47474 * 119.99920 * 2 1 3 32 32 H 1.08997 * 109.47368 * 60.00320 * 3 2 1 33 33 H 1.08998 * 109.46984 * 299.99626 * 3 2 1 34 34 H 1.09002 * 110.25270 * 77.99045 * 5 4 3 35 35 H 1.09003 * 110.31981 * 316.02569 * 5 4 3 36 36 H 0.97000 * 119.99852 * 179.97438 * 14 13 11 37 37 H 1.09006 * 109.46869 * 35.87167 * 19 10 8 38 38 H 1.08997 * 109.47026 * 155.86794 * 19 10 8 39 39 H 1.09007 * 109.46922 * 59.99741 * 23 22 20 40 40 H 1.09003 * 109.47392 * 179.97438 * 23 22 20 41 41 H 1.08999 * 109.47202 * 300.00066 * 23 22 20 42 42 H 1.08996 * 110.48153 * 143.45540 * 24 6 5 43 43 H 1.09001 * 110.48615 * 266.10089 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3325 1.4428 -1.2126 6 6 5.7408 1.0076 -0.7501 7 1 5.8672 -0.0707 -0.8468 8 6 6.8109 1.7439 -1.5142 9 8 6.5032 2.5122 -2.4010 10 7 8.1098 1.5488 -1.2123 11 6 8.4576 0.6807 -0.2097 12 1 7.7082 0.3285 0.4837 13 6 9.7742 0.2543 -0.0856 14 7 10.5638 0.2458 -1.1360 15 14 10.4217 -0.3069 1.5742 16 1 10.1957 -1.7668 1.7259 17 1 11.8760 -0.0194 1.6612 18 1 9.7081 0.4193 2.6553 19 6 9.1501 2.2650 -1.9548 20 6 9.4634 1.5192 -3.2262 21 8 8.8783 0.4944 -3.4854 22 8 10.3934 1.9930 -4.0703 23 6 10.6437 1.2225 -5.2753 24 6 5.7307 1.4326 0.7366 25 6 4.2638 1.4429 1.1089 26 8 3.8355 1.4495 2.2435 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 4.3696 2.4432 -1.6440 35 1 3.9384 0.7332 -1.9402 36 1 11.4831 -0.0516 -1.0494 37 1 8.7976 3.2672 -2.1988 38 1 10.0497 2.3352 -1.3434 39 1 9.7260 1.1532 -5.8594 40 1 11.4149 1.7148 -5.8678 41 1 10.9778 0.2212 -5.0034 42 1 6.2740 0.7087 1.3439 43 1 6.1605 2.4277 0.8519 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413477513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:42 Heat of formation + Delta-G solvation = -143.253064 kcal Electronic energy + Delta-G solvation = -27219.341516 eV Core-core repulsion = 23265.409482 eV Total energy + Delta-G solvation = -3953.932034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.41770 -39.42780 -38.28436 -36.14879 -35.50770 -34.73086 -34.53459 -31.78916 -31.28911 -28.59987 -27.27465 -26.61283 -25.88603 -24.91040 -22.41944 -21.71868 -20.29882 -19.24430 -19.13067 -17.38136 -16.82171 -16.61104 -16.29286 -15.80415 -15.45955 -15.33451 -15.04216 -14.48687 -14.42394 -14.26831 -13.83563 -13.51131 -13.40478 -13.07329 -12.76748 -12.56901 -12.44888 -12.14700 -12.09597 -11.84348 -11.69211 -11.43828 -11.35931 -11.33531 -11.06174 -10.86194 -10.80219 -10.71103 -10.52252 -10.41630 -9.89205 -9.68583 -9.52747 -9.08484 -8.73240 -8.45291 -8.09772 -6.63704 -4.07548 2.87406 3.00938 3.15292 3.18638 3.20081 3.37179 3.59093 3.85385 4.00169 4.38659 4.72171 4.82607 4.89012 4.92694 5.07166 5.19175 5.38092 5.43413 5.48512 5.58990 5.64682 5.67391 5.72452 5.84611 5.88312 5.91627 5.99121 6.03348 6.05761 6.16517 6.19217 6.25587 6.32494 6.47542 6.53845 6.76963 7.27271 7.33966 7.35854 7.46597 8.10553 8.44785 8.85722 8.99863 9.21673 9.61688 10.43507 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.014473 B = 0.004435 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.131742 B = 6311.482317 C = 7678.757636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.127 3.873 4 N -0.621 5.621 5 C 0.117 3.883 6 C -0.096 4.096 7 H 0.109 0.891 8 C 0.476 3.524 9 O -0.600 6.600 10 N -0.419 5.419 11 C -0.347 4.347 12 H 0.112 0.888 13 C 0.042 3.958 14 N -0.859 5.859 15 Si 0.917 3.083 16 H -0.277 1.277 17 H -0.280 1.280 18 H -0.265 1.265 19 C 0.154 3.846 20 C 0.483 3.517 21 O -0.498 6.498 22 O -0.375 6.375 23 C 0.044 3.956 24 C -0.137 4.137 25 C 0.519 3.481 26 O -0.543 6.543 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.274 0.726 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.113 0.887 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.961 1.497 -1.270 7.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.004 3.996 4 N -0.355 5.355 5 C -0.005 4.005 6 C -0.118 4.118 7 H 0.127 0.873 8 C 0.264 3.736 9 O -0.486 6.486 10 N -0.137 5.137 11 C -0.474 4.474 12 H 0.129 0.871 13 C -0.164 4.164 14 N -0.496 5.496 15 Si 0.742 3.258 16 H -0.203 1.203 17 H -0.206 1.206 18 H -0.189 1.189 19 C 0.028 3.972 20 C 0.324 3.676 21 O -0.383 6.383 22 O -0.293 6.293 23 C -0.051 4.051 24 C -0.177 4.177 25 C 0.307 3.693 26 O -0.421 6.421 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.142 0.858 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.074 0.926 42 H 0.131 0.869 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.353 1.498 -1.267 7.610 hybrid contribution 0.685 -0.882 0.426 1.195 sum -6.667 0.616 -0.841 6.748 Atomic orbital electron populations 1.21687 0.95231 1.01843 1.01820 1.21928 0.95982 0.97426 1.02804 1.21376 0.78478 0.96829 1.02869 1.48398 1.05917 1.73364 1.07807 1.22019 0.88855 1.03439 0.86232 1.21856 0.93241 1.02318 0.94406 0.87318 1.19573 0.83509 0.85428 0.85050 1.90550 1.82187 1.41407 1.34485 1.43375 1.02706 1.37556 1.30022 1.19824 0.95429 1.25792 1.06321 0.87062 1.25205 0.96770 0.96153 0.98278 1.69935 1.08217 1.43602 1.27865 0.86089 0.78376 0.79103 0.82198 1.20254 1.20576 1.18909 1.20533 0.94512 0.93112 0.89029 1.23954 0.75354 0.84435 0.83822 1.90519 1.50231 1.23579 1.73978 1.86456 1.57318 1.53290 1.32196 1.22946 1.00642 0.96404 0.85107 1.22402 0.93414 1.05512 0.96410 1.21142 0.89606 0.74368 0.84152 1.90667 1.78989 1.51201 1.21225 0.92620 0.92544 0.92598 0.91618 0.91547 0.90278 0.90503 0.89241 0.90583 0.91564 0.89716 0.85824 0.93102 0.89550 0.92566 0.86912 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.14 -1.60 6.26 -26.73 -0.17 -1.77 16 3 C 0.13 1.56 5.93 -4.04 -0.02 1.53 16 4 N -0.62 -9.40 2.93 -172.38 -0.51 -9.90 16 5 C 0.12 1.84 6.69 -3.12 -0.02 1.82 16 6 C -0.10 -1.74 2.58 -90.14 -0.23 -1.98 16 7 H 0.11 1.97 8.09 -51.93 -0.42 1.55 16 8 C 0.48 10.47 6.74 -10.99 -0.07 10.40 16 9 O -0.60 -14.33 15.21 5.54 0.08 -14.25 16 10 N -0.42 -9.68 2.18 -116.09 -0.25 -9.93 16 11 C -0.35 -7.98 8.83 -14.93 -0.13 -8.12 16 12 H 0.11 2.37 4.54 -52.49 -0.24 2.14 16 13 C 0.04 0.98 4.80 -17.47 -0.08 0.90 16 14 N -0.86 -21.08 9.50 55.50 0.53 -20.55 16 15 Si 0.92 18.26 29.62 -169.99 -5.04 13.22 16 16 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 17 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 C 0.15 3.46 5.14 -5.19 -0.03 3.43 16 20 C 0.48 11.42 6.21 36.00 0.22 11.65 16 21 O -0.50 -13.23 15.85 -18.75 -0.30 -13.52 16 22 O -0.38 -7.76 10.57 -39.26 -0.41 -8.18 16 23 C 0.04 0.73 10.56 101.05 1.07 1.79 16 24 C -0.14 -2.34 5.26 -26.71 -0.14 -2.48 16 25 C 0.52 9.05 8.02 -10.83 -0.09 8.96 16 26 O -0.54 -10.93 17.59 5.56 0.10 -10.83 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.50 7.01 -51.93 -0.36 1.14 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 37 H 0.08 1.77 7.61 -51.93 -0.39 1.38 16 38 H 0.12 2.77 6.30 -51.93 -0.33 2.44 16 39 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 42 H 0.11 1.90 6.49 -51.93 -0.34 1.56 16 43 H 0.11 1.84 7.89 -51.93 -0.41 1.43 16 LS Contribution 357.27 15.07 5.38 5.38 Total: -1.00 -30.72 357.27 -6.01 -36.73 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.26 Total: 6.63 kcal Atomic # 6 Polarization: 24.53 SS G_CDS: 0.67 Total: 25.20 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: -0.23 Total: -40.38 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -0.53 Total: -46.78 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.04 Total: 13.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.72 -6.01 -36.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413477513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.524 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds