Wall clock time and date at job start Fri Apr 10 2020 18:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46811 * 2 1 4 4 H 1.09002 * 109.47106 * 57.73716 * 3 2 1 5 5 C 1.50703 * 109.46826 * 177.73642 * 3 2 1 6 6 O 1.21285 * 120.00055 * 101.58107 * 5 3 2 7 7 N 1.34781 * 119.99542 * 281.85528 * 5 3 2 8 8 C 1.37092 * 120.00419 * 4.88671 * 7 5 3 9 9 H 1.08007 * 119.99983 * 318.36996 * 8 7 5 10 10 C 1.38951 * 120.00147 * 138.36861 * 8 7 5 11 11 N 1.31410 * 119.99968 * 161.66284 * 10 8 7 12 12 Si 1.86798 * 119.99900 * 341.65886 * 10 8 7 13 13 H 1.48500 * 109.47344 * 93.25364 * 12 10 8 14 14 H 1.48500 * 109.47249 * 213.25691 * 12 10 8 15 15 H 1.48503 * 109.47228 * 333.25523 * 12 10 8 16 16 C 1.46503 * 119.99626 * 184.88610 * 7 5 3 17 17 C 1.50701 * 109.47290 * 84.14361 * 16 7 5 18 18 O 1.20832 * 119.99811 * 359.97438 * 17 16 7 19 19 O 1.34227 * 120.00370 * 179.97438 * 17 16 7 20 20 C 1.45196 * 116.99920 * 179.97438 * 19 17 16 21 21 N 1.46500 * 109.47279 * 297.73581 * 3 2 1 22 22 C 1.46762 * 124.34916 * 120.00004 * 21 3 2 23 23 C 1.54481 * 105.47089 * 197.01397 * 22 21 3 24 24 C 1.54623 * 101.76917 * 334.58432 * 23 22 21 25 25 C 1.34416 * 124.34667 * 299.69939 * 21 3 2 26 26 O 1.21284 * 124.94562 * 359.57033 * 25 21 3 27 27 H 1.08994 * 109.46919 * 299.99906 * 1 2 3 28 28 H 1.08999 * 109.47045 * 60.00054 * 1 2 3 29 29 H 1.08998 * 109.46779 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47142 * 240.00285 * 2 1 3 31 31 H 1.08995 * 109.47491 * 120.00163 * 2 1 3 32 32 H 0.97009 * 119.99394 * 180.02562 * 11 10 8 33 33 H 1.08994 * 109.47209 * 204.14175 * 16 7 5 34 34 H 1.08995 * 109.47266 * 324.14603 * 16 7 5 35 35 H 1.08997 * 109.47713 * 299.99967 * 20 19 17 36 36 H 1.09007 * 109.47188 * 60.00206 * 20 19 17 37 37 H 1.09000 * 109.47131 * 179.97438 * 20 19 17 38 38 H 1.08991 * 110.24730 * 316.01790 * 22 21 3 39 39 H 1.09005 * 110.24163 * 78.01484 * 22 21 3 40 40 H 1.09000 * 110.96901 * 92.70832 * 23 22 21 41 41 H 1.09005 * 110.96690 * 216.46326 * 23 22 21 42 42 H 1.08995 * 110.48695 * 143.46927 * 24 23 22 43 43 H 1.09003 * 110.48839 * 265.99033 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6439 1.9679 0.8690 5 6 3.5460 1.4429 0.0561 6 8 4.1903 1.6404 -0.9522 7 7 4.1767 1.2183 1.2259 8 6 3.4529 0.8908 2.3431 9 1 2.5255 1.4022 2.5550 10 6 3.9125 -0.0993 3.2031 11 7 3.4439 -0.1746 4.4285 12 14 5.1962 -1.3232 2.6171 13 1 6.5504 -0.8290 2.9736 14 1 4.9614 -2.6369 3.2685 15 1 5.0975 -1.4767 1.1433 16 6 5.6358 1.3243 1.3033 17 6 6.0244 2.7649 1.5151 18 8 5.1701 3.6158 1.5929 19 8 7.3194 3.1027 1.6174 20 6 7.6198 4.5087 1.8201 21 7 1.5967 2.1172 -1.2225 22 6 0.7494 3.3154 -1.2464 23 6 0.1959 3.4000 -2.6862 24 6 1.2786 2.6387 -3.4855 25 6 1.9185 1.7218 -2.4662 26 8 2.6178 0.7674 -2.7327 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.7650 -0.8656 5.0289 33 1 6.0000 0.7235 2.1367 34 1 6.0763 0.9621 0.3745 35 1 7.2314 5.0878 0.9823 36 1 7.1542 4.8502 2.7447 37 1 8.6994 4.6438 1.8861 38 1 -0.0684 3.2132 -0.5332 39 1 1.3422 4.2010 -1.0174 40 1 -0.7695 2.9000 -2.7629 41 1 0.1240 4.4364 -3.0161 42 1 0.8233 2.0608 -4.2897 43 1 2.0162 3.3339 -3.8867 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415231708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:52 Heat of formation + Delta-G solvation = -132.594831 kcal Electronic energy + Delta-G solvation = -28232.654894 eV Core-core repulsion = 24279.185036 eV Total energy + Delta-G solvation = -3953.469859 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.39404 -39.85732 -38.39032 -35.95536 -35.81820 -34.85058 -34.24020 -32.06782 -30.62412 -29.17489 -27.31041 -27.10891 -25.94874 -24.66302 -21.77867 -21.58961 -21.07326 -19.66616 -18.57215 -17.47566 -17.22735 -16.86735 -16.17623 -15.98241 -15.74003 -15.39081 -14.97220 -14.86279 -14.09522 -13.83554 -13.77152 -13.31574 -13.28593 -13.03256 -12.84393 -12.68297 -12.56587 -12.56296 -12.30034 -11.91281 -11.78240 -11.63113 -11.37635 -11.26326 -10.96316 -10.88325 -10.70191 -10.58433 -10.40900 -10.37364 -10.12307 -9.90509 -9.36825 -9.05974 -8.87866 -8.11808 -7.86746 -6.56809 -4.24523 2.83313 2.94151 2.96928 3.17199 3.22598 3.25611 3.40947 3.72943 4.02489 4.34139 4.63685 4.64400 4.82591 4.91179 5.25700 5.34065 5.40733 5.42030 5.53068 5.57142 5.62767 5.66265 5.72820 5.74984 5.76184 5.76370 5.86839 5.91952 5.96828 6.07065 6.15651 6.26976 6.46919 6.57417 6.82315 6.87308 7.07177 7.16609 7.70724 7.94456 8.09958 8.36257 8.75665 8.86270 9.18671 9.51811 10.52953 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.012439 B = 0.006381 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.380498 B = 4387.119746 C = 5665.832960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.167 3.833 4 H 0.109 0.891 5 C 0.493 3.507 6 O -0.560 6.560 7 N -0.455 5.455 8 C -0.344 4.344 9 H 0.106 0.894 10 C 0.070 3.930 11 N -0.855 5.855 12 Si 0.859 3.141 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.253 1.253 16 C 0.109 3.891 17 C 0.451 3.549 18 O -0.494 6.494 19 O -0.369 6.369 20 C 0.037 3.963 21 N -0.607 5.607 22 C 0.104 3.896 23 C -0.129 4.129 24 C -0.156 4.156 25 C 0.521 3.479 26 O -0.510 6.510 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.277 0.723 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.448 5.956 -7.024 9.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.127 0.873 5 C 0.281 3.719 6 O -0.440 6.440 7 N -0.179 5.179 8 C -0.471 4.471 9 H 0.124 0.876 10 C -0.138 4.138 11 N -0.489 5.489 12 Si 0.685 3.315 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.177 1.177 16 C -0.016 4.016 17 C 0.291 3.709 18 O -0.379 6.379 19 O -0.286 6.286 20 C -0.057 4.057 21 N -0.342 5.342 22 C -0.020 4.020 23 C -0.167 4.167 24 C -0.196 4.196 25 C 0.308 3.692 26 O -0.383 6.383 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.991 5.697 -7.391 9.799 hybrid contribution 0.753 -0.206 0.295 0.835 sum -2.238 5.491 -7.096 9.247 Atomic orbital electron populations 1.21662 0.95768 1.01145 1.01093 1.21761 0.95732 0.94748 1.04621 1.20599 0.92083 0.95060 0.86133 0.87312 1.20641 0.90154 0.78586 0.82495 1.90615 1.67504 1.51867 1.34038 1.43321 1.02524 1.62861 1.09150 1.19023 1.08234 1.19454 1.00390 0.87649 1.25361 0.97197 0.96618 0.94660 1.69724 1.42608 1.32612 1.03948 0.87183 0.81371 0.81763 0.81231 1.19628 1.20625 1.17677 1.21368 0.86432 0.89245 1.04569 1.24833 0.80065 0.93559 0.72409 1.90590 1.50813 1.51591 1.44884 1.86531 1.29276 1.29182 1.83600 1.23130 1.01350 0.79560 1.01705 1.48059 1.51337 1.28820 1.05979 1.22028 0.94112 0.88167 0.97646 1.22550 0.98422 1.01435 0.94273 1.22318 0.99243 0.99581 0.98467 1.20561 0.79985 0.84887 0.83760 1.90692 1.36644 1.28817 1.82197 0.92700 0.93505 0.92989 0.90991 0.88388 0.91261 0.87323 0.87361 0.92409 0.92207 0.88720 0.90473 0.91524 0.90221 0.89654 0.88737 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.78 37.16 0.36 -1.76 16 2 C -0.13 -2.50 5.23 -26.73 -0.14 -2.64 16 3 C 0.17 3.37 1.98 -69.08 -0.14 3.23 16 4 H 0.11 2.14 6.82 -51.93 -0.35 1.78 16 5 C 0.49 11.88 6.59 -10.98 -0.07 11.81 16 6 O -0.56 -14.80 13.73 -15.89 -0.22 -15.02 16 7 N -0.46 -11.07 1.67 -116.10 -0.19 -11.26 16 8 C -0.34 -8.64 7.76 -14.94 -0.12 -8.76 16 9 H 0.11 2.76 6.89 -52.48 -0.36 2.40 16 10 C 0.07 1.77 5.31 -17.47 -0.09 1.67 16 11 N -0.85 -22.57 13.96 55.50 0.77 -21.80 16 12 Si 0.86 19.39 25.05 -169.99 -4.26 15.13 16 13 H -0.27 -5.80 6.66 56.52 0.38 -5.43 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.25 -5.87 7.11 56.52 0.40 -5.46 16 16 C 0.11 2.49 4.54 -5.19 -0.02 2.47 16 17 C 0.45 10.04 7.98 36.01 0.29 10.32 16 18 O -0.49 -12.05 16.04 -18.75 -0.30 -12.35 16 19 O -0.37 -6.99 10.57 -39.25 -0.41 -7.40 16 20 C 0.04 0.53 10.56 101.05 1.07 1.60 16 21 N -0.61 -10.72 2.08 -166.15 -0.35 -11.07 16 22 C 0.10 1.33 7.30 -3.12 -0.02 1.31 16 23 C -0.13 -1.26 7.18 -25.10 -0.18 -1.44 16 24 C -0.16 -2.00 6.86 -26.74 -0.18 -2.18 16 25 C 0.52 9.79 6.75 -10.85 -0.07 9.71 16 26 O -0.51 -11.88 14.74 -15.89 -0.23 -12.12 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.67 7.67 -51.93 -0.40 0.27 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.52 6.75 -51.93 -0.35 1.17 16 31 H 0.10 2.03 6.87 -51.93 -0.36 1.67 16 32 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.11 2.43 3.79 -51.93 -0.20 2.23 16 34 H 0.11 2.38 7.54 -51.93 -0.39 1.99 16 35 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 36 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 350.70 15.07 5.28 5.28 Total: -1.00 -33.70 350.70 -5.45 -39.15 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.22 Total: 6.11 kcal Atomic # 6 Polarization: 24.67 SS G_CDS: 0.68 Total: 25.35 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.24 Total: -44.13 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -1.17 Total: -46.89 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.26 Total: 15.13 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.70 -5.45 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415231708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.450 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds