Wall clock time and date at job start Fri Apr 10 2020 18:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46811 * 2 1 4 4 H 1.09002 * 109.47106 * 57.73716 * 3 2 1 5 5 C 1.50703 * 109.46826 * 177.73642 * 3 2 1 6 6 O 1.21285 * 120.00055 * 101.58107 * 5 3 2 7 7 N 1.34781 * 119.99542 * 281.85528 * 5 3 2 8 8 C 1.37092 * 120.00419 * 4.88671 * 7 5 3 9 9 H 1.08007 * 119.99983 * 318.36996 * 8 7 5 10 10 C 1.38951 * 120.00147 * 138.36861 * 8 7 5 11 11 N 1.31410 * 119.99968 * 161.66284 * 10 8 7 12 12 Si 1.86798 * 119.99900 * 341.65886 * 10 8 7 13 13 H 1.48500 * 109.47344 * 93.25364 * 12 10 8 14 14 H 1.48500 * 109.47249 * 213.25691 * 12 10 8 15 15 H 1.48503 * 109.47228 * 333.25523 * 12 10 8 16 16 C 1.46503 * 119.99626 * 184.88610 * 7 5 3 17 17 C 1.50701 * 109.47290 * 84.14361 * 16 7 5 18 18 O 1.20832 * 119.99811 * 359.97438 * 17 16 7 19 19 O 1.34227 * 120.00370 * 179.97438 * 17 16 7 20 20 C 1.45196 * 116.99920 * 179.97438 * 19 17 16 21 21 N 1.46500 * 109.47279 * 297.73581 * 3 2 1 22 22 C 1.46762 * 124.34916 * 120.00004 * 21 3 2 23 23 C 1.54481 * 105.47089 * 197.01397 * 22 21 3 24 24 C 1.54623 * 101.76917 * 334.58432 * 23 22 21 25 25 C 1.34416 * 124.34667 * 299.69939 * 21 3 2 26 26 O 1.21284 * 124.94562 * 359.57033 * 25 21 3 27 27 H 1.08994 * 109.46919 * 299.99906 * 1 2 3 28 28 H 1.08999 * 109.47045 * 60.00054 * 1 2 3 29 29 H 1.08998 * 109.46779 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47142 * 240.00285 * 2 1 3 31 31 H 1.08995 * 109.47491 * 120.00163 * 2 1 3 32 32 H 0.97009 * 119.99394 * 180.02562 * 11 10 8 33 33 H 1.08994 * 109.47209 * 204.14175 * 16 7 5 34 34 H 1.08995 * 109.47266 * 324.14603 * 16 7 5 35 35 H 1.08997 * 109.47713 * 299.99967 * 20 19 17 36 36 H 1.09007 * 109.47188 * 60.00206 * 20 19 17 37 37 H 1.09000 * 109.47131 * 179.97438 * 20 19 17 38 38 H 1.08991 * 110.24730 * 316.01790 * 22 21 3 39 39 H 1.09005 * 110.24163 * 78.01484 * 22 21 3 40 40 H 1.09000 * 110.96901 * 92.70832 * 23 22 21 41 41 H 1.09005 * 110.96690 * 216.46326 * 23 22 21 42 42 H 1.08995 * 110.48695 * 143.46927 * 24 23 22 43 43 H 1.09003 * 110.48839 * 265.99033 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6439 1.9679 0.8690 5 6 3.5460 1.4429 0.0561 6 8 4.1903 1.6404 -0.9522 7 7 4.1767 1.2183 1.2259 8 6 3.4529 0.8908 2.3431 9 1 2.5255 1.4022 2.5550 10 6 3.9125 -0.0993 3.2031 11 7 3.4439 -0.1746 4.4285 12 14 5.1962 -1.3232 2.6171 13 1 6.5504 -0.8290 2.9736 14 1 4.9614 -2.6369 3.2685 15 1 5.0975 -1.4767 1.1433 16 6 5.6358 1.3243 1.3033 17 6 6.0244 2.7649 1.5151 18 8 5.1701 3.6158 1.5929 19 8 7.3194 3.1027 1.6174 20 6 7.6198 4.5087 1.8201 21 7 1.5967 2.1172 -1.2225 22 6 0.7494 3.3154 -1.2464 23 6 0.1959 3.4000 -2.6862 24 6 1.2786 2.6387 -3.4855 25 6 1.9185 1.7218 -2.4662 26 8 2.6178 0.7674 -2.7327 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.7650 -0.8656 5.0289 33 1 6.0000 0.7235 2.1367 34 1 6.0763 0.9621 0.3745 35 1 7.2314 5.0878 0.9823 36 1 7.1542 4.8502 2.7447 37 1 8.6994 4.6438 1.8861 38 1 -0.0684 3.2132 -0.5332 39 1 1.3422 4.2010 -1.0174 40 1 -0.7695 2.9000 -2.7629 41 1 0.1240 4.4364 -3.0161 42 1 0.8233 2.0608 -4.2897 43 1 2.0162 3.3339 -3.8867 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415231708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:51 Heat of formation + Delta-G solvation = -153.665187 kcal Electronic energy + Delta-G solvation = -28233.568573 eV Core-core repulsion = 24279.185036 eV Total energy + Delta-G solvation = -3954.383538 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.99626 -41.41622 -40.08358 -37.62808 -37.26649 -36.76680 -35.65836 -34.04188 -31.85155 -30.85510 -28.55521 -28.34026 -27.57214 -26.46561 -23.19096 -22.74341 -22.60235 -21.41940 -20.25578 -19.15975 -18.92654 -18.50765 -17.64095 -17.52323 -17.24937 -17.03366 -16.66178 -16.31984 -15.77467 -15.55957 -15.12404 -14.88452 -14.65830 -14.57833 -14.37984 -14.23675 -14.15121 -13.74591 -13.55220 -13.44902 -13.28515 -13.06026 -12.98323 -12.70248 -12.46324 -12.34905 -12.09329 -11.99243 -11.92137 -11.87150 -11.73127 -11.71449 -11.21719 -10.72161 -10.48916 -9.92928 -9.49751 -8.54703 -6.24818 1.06102 1.14011 1.26339 1.37750 1.42183 1.79454 1.91119 2.04904 2.13492 2.63029 2.87794 3.53147 3.70443 3.80279 3.86878 3.96902 4.05386 4.09897 4.11757 4.16660 4.25639 4.26468 4.33875 4.49063 4.59619 4.60100 4.71653 4.73915 4.85555 4.92076 5.11746 5.13272 5.18464 5.18898 5.26501 5.27595 5.39273 5.66061 5.99883 6.09997 6.38391 6.64896 6.86477 7.21771 7.40512 7.61598 8.58254 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.012439 B = 0.006381 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.380498 B = 4387.119746 C = 5665.832960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 C 0.169 3.831 4 H 0.111 0.889 5 C 0.481 3.519 6 O -0.589 6.589 7 N -0.463 5.463 8 C -0.340 4.340 9 H 0.088 0.912 10 C 0.041 3.959 11 N -0.885 5.885 12 Si 0.901 3.099 13 H -0.248 1.248 14 H -0.273 1.273 15 H -0.268 1.268 16 C 0.100 3.900 17 C 0.454 3.546 18 O -0.522 6.522 19 O -0.366 6.366 20 C 0.028 3.972 21 N -0.610 5.610 22 C 0.092 3.908 23 C -0.108 4.108 24 C -0.147 4.147 25 C 0.501 3.499 26 O -0.569 6.569 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.283 0.717 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.141 0.859 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.103 0.897 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.136 7.162 -7.651 11.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.062 3.938 4 H 0.129 0.871 5 C 0.271 3.729 6 O -0.472 6.472 7 N -0.186 5.186 8 C -0.467 4.467 9 H 0.106 0.894 10 C -0.165 4.165 11 N -0.521 5.521 12 Si 0.725 3.275 13 H -0.174 1.174 14 H -0.198 1.198 15 H -0.193 1.193 16 C -0.025 4.025 17 C 0.296 3.704 18 O -0.410 6.410 19 O -0.282 6.282 20 C -0.065 4.065 21 N -0.344 5.344 22 C -0.030 4.030 23 C -0.146 4.146 24 C -0.187 4.187 25 C 0.290 3.710 26 O -0.447 6.447 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.159 0.841 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.121 0.879 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.680 6.943 -7.994 11.210 hybrid contribution 1.052 -0.489 0.500 1.263 sum -2.629 6.455 -7.494 10.234 Atomic orbital electron populations 1.21585 0.92314 1.02408 1.02218 1.21642 0.98648 0.93643 1.02131 1.20482 0.89541 0.96032 0.87728 0.87140 1.21425 0.91928 0.77652 0.81912 1.90580 1.68565 1.53202 1.34824 1.43422 1.03173 1.62964 1.09022 1.18862 1.07985 1.19474 1.00385 0.89403 1.25765 0.98764 0.97476 0.94515 1.69768 1.44104 1.33513 1.04727 0.86506 0.80763 0.80424 0.79786 1.17385 1.19821 1.19274 1.21413 0.85863 0.90297 1.04904 1.24554 0.80970 0.92974 0.71892 1.90569 1.51836 1.52196 1.46376 1.86493 1.26889 1.32020 1.82840 1.23572 1.04286 0.76862 1.01751 1.48280 1.51407 1.29852 1.04878 1.22415 0.94017 0.85873 1.00705 1.22605 0.97909 1.03215 0.90845 1.22347 1.00027 0.98814 0.97533 1.21712 0.79307 0.84806 0.85139 1.90646 1.39300 1.31541 1.83242 0.91645 0.92132 0.91728 0.93532 0.90676 0.90719 0.86884 0.87038 0.92365 0.92134 0.84131 0.88285 0.91966 0.87894 0.86350 0.86814 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 9.78 71.98 0.70 -3.06 16 2 C -0.12 -4.81 5.23 30.60 0.16 -4.65 16 3 C 0.17 6.97 1.98 44.25 0.09 7.06 16 4 H 0.11 4.45 6.82 -2.39 -0.02 4.43 16 5 C 0.48 23.99 6.59 87.66 0.58 24.57 16 6 O -0.59 -32.30 13.73 17.46 0.24 -32.07 16 7 N -0.46 -23.11 1.67 -639.60 -1.07 -24.18 16 8 C -0.34 -17.53 7.76 84.04 0.65 -16.88 16 9 H 0.09 4.77 6.89 -2.91 -0.02 4.75 16 10 C 0.04 2.08 5.31 84.93 0.45 2.53 16 11 N -0.89 -47.16 13.96 21.66 0.30 -46.86 16 12 Si 0.90 40.05 25.05 68.60 1.72 41.77 16 13 H -0.25 -10.15 6.66 99.48 0.66 -9.49 16 14 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 15 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 16 C 0.10 4.63 4.54 85.63 0.39 5.02 16 17 C 0.45 20.30 7.98 71.24 0.57 20.86 16 18 O -0.52 -25.77 16.04 21.95 0.35 -25.42 16 19 O -0.37 -13.46 10.57 -51.39 -0.54 -14.00 16 20 C 0.03 0.76 10.56 113.37 1.20 1.96 16 21 N -0.61 -21.34 2.08 -798.18 -1.66 -23.00 16 22 C 0.09 2.13 7.30 86.83 0.63 2.76 16 23 C -0.11 -1.68 7.18 31.65 0.23 -1.45 16 24 C -0.15 -3.44 6.86 30.59 0.21 -3.23 16 25 C 0.50 18.78 6.75 87.90 0.59 19.37 16 26 O -0.57 -27.47 14.74 17.46 0.26 -27.21 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 28 H 0.06 1.61 7.67 -2.39 -0.02 1.59 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 2.06 6.75 -2.39 -0.02 2.04 16 31 H 0.07 3.25 6.87 -2.39 -0.02 3.24 16 32 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 33 H 0.11 5.04 3.79 -2.39 -0.01 5.03 16 34 H 0.11 5.02 7.54 -2.39 -0.02 5.00 16 35 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 36 H 0.06 1.64 8.13 -2.38 -0.02 1.62 16 37 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -76.86 350.70 7.03 -69.83 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.98 Total: 26.26 kcal Atomic # 6 Polarization: 48.42 SS G_CDS: 6.45 Total: 54.87 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -2.43 Total: -94.04 kcal Atomic # 8 Polarization: -99.00 SS G_CDS: 0.31 Total: -98.70 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.72 Total: 41.77 kcal Total: -76.86 7.03 -69.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415231708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.835 kcal (2) G-P(sol) polarization free energy of solvation -76.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds