Wall clock time and date at job start Fri Apr 10 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48502 * 109.47496 * 269.99815 * 3 2 1 5 5 H 1.48494 * 109.47146 * 30.00156 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99805 * 3 2 1 7 7 C 1.37875 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00065 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99923 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27942 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 H 1.09008 * 109.47304 * 304.99667 * 15 14 13 17 17 O 1.42902 * 109.47328 * 64.99617 * 15 14 13 18 18 C 1.53003 * 109.47530 * 184.99929 * 15 14 13 19 19 O 1.42894 * 109.47529 * 174.99893 * 18 15 14 20 20 C 1.35948 * 117.00316 * 180.02562 * 19 18 15 21 21 C 1.38715 * 120.02608 * 359.72036 * 20 19 18 22 22 C 1.38149 * 119.96488 * 179.79311 * 21 20 19 23 23 C 1.38454 * 120.03420 * 0.48511 * 22 21 20 24 24 F 1.35094 * 119.97154 * 179.72421 * 23 22 21 25 25 C 1.38453 * 120.05622 * 359.74594 * 23 22 21 26 26 C 1.38150 * 120.03298 * 0.02562 * 25 23 22 27 27 H 0.97010 * 119.99768 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47088 * 59.99370 * 9 7 2 29 29 H 1.09006 * 109.46998 * 299.99569 * 9 7 2 30 30 H 0.97000 * 120.00386 * 0.02562 * 10 9 7 31 31 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 33 33 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 34 34 H 0.96696 * 113.99765 * 60.00422 * 17 15 14 35 35 H 1.08998 * 109.46886 * 295.00118 * 18 15 14 36 36 H 1.09002 * 109.46923 * 54.99368 * 18 15 14 37 37 H 1.07997 * 120.01107 * 0.02562 * 21 20 19 38 38 H 1.08001 * 119.98271 * 180.21583 * 22 21 20 39 39 H 1.08008 * 119.98288 * 179.97438 * 25 23 22 40 40 H 1.08004 * 120.01490 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 5.3248 -2.8216 -0.0001 12 8 6.1150 -1.8975 0.0004 13 7 5.7741 -4.0923 -0.0008 14 6 7.2144 -4.3600 0.0054 15 6 7.4522 -5.8714 0.0102 16 1 6.9232 -6.3198 0.8513 17 8 6.9683 -6.4337 -1.2112 18 6 8.9505 -6.1516 0.1423 19 8 9.1630 -7.5594 0.2639 20 6 10.4492 -7.9808 0.3914 21 6 11.4850 -7.0581 0.3934 22 6 12.7912 -7.4873 0.5273 23 6 13.0676 -8.8385 0.6495 24 9 14.3458 -9.2573 0.7748 25 6 12.0350 -9.7609 0.6428 26 6 10.7275 -9.3341 0.5138 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6808 0.8905 29 1 3.8752 -0.6797 -0.8895 30 1 3.3695 -3.3126 -0.0009 31 1 5.1437 -4.8296 -0.0008 32 1 7.6688 -3.9236 -0.8841 33 1 7.6622 -3.9190 0.8958 34 1 7.3956 -6.0802 -2.0033 35 1 9.4688 -5.7810 -0.7421 36 1 9.3377 -5.6478 1.0280 37 1 11.2699 -6.0044 0.2940 38 1 13.5976 -6.7689 0.5324 39 1 12.2520 -10.8147 0.7378 40 1 9.9223 -10.0539 0.5082 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426441040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:05 Heat of formation + Delta-G solvation = -166.670656 kcal Electronic energy + Delta-G solvation = -24112.622250 eV Core-core repulsion = 20034.214447 eV Total energy + Delta-G solvation = -4078.407802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.83534 -41.26263 -40.87347 -39.03092 -37.71785 -36.19086 -35.25960 -34.35980 -32.39629 -31.79098 -30.37405 -29.59258 -26.90699 -24.42525 -23.89936 -23.15616 -22.68210 -21.84089 -19.91835 -19.38048 -18.58996 -18.31254 -18.07319 -17.66858 -17.38273 -16.77305 -16.67325 -16.47026 -16.26490 -15.75764 -15.64284 -15.29528 -15.14521 -14.90762 -14.62707 -14.45061 -14.33850 -14.25235 -13.97805 -13.50679 -13.39561 -13.15883 -13.01425 -12.67612 -12.19179 -11.91044 -11.86993 -11.72229 -11.64325 -11.38840 -11.13477 -10.90288 -10.32472 -10.19968 -9.65442 -9.13093 -8.38181 -6.45247 0.14965 0.18356 1.35305 1.37006 1.50203 1.65063 2.20545 2.21209 2.30463 2.55465 2.97502 3.31698 3.36061 3.48013 3.65022 3.70237 3.81828 3.86119 3.95426 4.12074 4.28353 4.31693 4.39945 4.61043 4.64613 4.78928 4.89817 4.95400 5.07442 5.11451 5.14416 5.20698 5.26755 5.47694 5.56663 5.68310 5.97455 6.28495 6.32145 6.57198 6.74091 7.15232 7.26237 7.66452 8.76546 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.044563 B = 0.001794 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.176675 B =15602.274279 C =16087.577753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.251 3.749 10 N -0.723 5.723 11 C 0.695 3.305 12 O -0.644 6.644 13 N -0.729 5.729 14 C 0.112 3.888 15 C 0.115 3.885 16 H 0.116 0.884 17 O -0.562 6.562 18 C 0.027 3.973 19 O -0.314 6.314 20 C 0.112 3.888 21 C -0.184 4.184 22 C -0.115 4.115 23 C 0.036 3.964 24 F -0.151 7.151 25 C -0.113 4.113 26 C -0.132 4.132 27 H 0.272 0.728 28 H 0.011 0.989 29 H 0.010 0.990 30 H 0.405 0.595 31 H 0.411 0.589 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.390 0.610 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.797 -19.484 0.384 32.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.175 4.175 3 Si 0.763 3.237 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.585 4.585 8 H 0.076 0.924 9 C 0.127 3.873 10 N -0.376 5.376 11 C 0.395 3.605 12 O -0.527 6.527 13 N -0.387 5.387 14 C -0.012 4.012 15 C 0.055 3.945 16 H 0.134 0.866 17 O -0.370 6.370 18 C -0.048 4.048 19 O -0.227 6.227 20 C 0.066 3.934 21 C -0.202 4.202 22 C -0.134 4.134 23 C 0.017 3.983 24 F -0.130 7.130 25 C -0.131 4.131 26 C -0.150 4.150 27 H 0.081 0.919 28 H 0.029 0.971 29 H 0.028 0.972 30 H 0.240 0.760 31 H 0.247 0.753 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.240 0.760 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.176 0.824 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 25.826 -18.985 0.783 32.062 hybrid contribution 0.074 0.647 -0.304 0.719 sum 25.900 -18.337 0.479 31.738 Atomic orbital electron populations 1.69987 1.07732 1.28611 1.50726 1.25603 0.95549 1.02731 0.93568 0.85829 0.79260 0.79150 0.79470 1.18961 1.19887 1.18320 1.21299 0.90025 0.94569 1.52638 0.92387 1.18948 0.92932 0.79830 0.95582 1.45123 1.04767 1.09919 1.77808 1.16176 0.82659 0.83773 0.77893 1.90837 1.56111 1.44962 1.60742 1.44745 1.08539 1.05164 1.80224 1.21772 0.80429 0.95418 1.03625 1.21945 0.92608 0.90646 0.89324 0.86581 1.86638 1.66592 1.67714 1.16034 1.23579 0.97278 0.79647 1.04332 1.86113 1.23285 1.25777 1.87563 1.19256 0.83595 0.93901 0.96611 1.21377 0.91646 1.00977 1.06214 1.21191 0.98151 0.94253 0.99796 1.17870 0.78874 0.93703 1.07899 1.91469 1.36637 1.90938 1.93979 1.21181 0.90902 1.00948 1.00086 1.20510 0.97011 0.93522 1.03975 0.91862 0.97061 0.97183 0.76033 0.75265 0.90799 0.90416 0.75989 0.89200 0.88921 0.82488 0.82945 0.82375 0.83057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 13.96 21.45 0.30 -55.25 16 2 C 0.03 1.45 5.47 84.66 0.46 1.91 16 3 Si 0.94 43.80 27.47 68.60 1.88 45.69 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -11.94 6.54 99.48 0.65 -11.29 16 7 C -0.55 -30.21 9.83 25.60 0.25 -29.96 16 8 H 0.06 3.37 7.84 -2.91 -0.02 3.34 16 9 C 0.25 12.33 4.50 85.63 0.38 12.71 16 10 N -0.72 -28.86 5.55 -482.28 -2.68 -31.54 16 11 C 0.70 25.61 8.57 179.05 1.53 27.14 16 12 O -0.64 -28.76 16.34 -4.01 -0.07 -28.83 16 13 N -0.73 -18.01 5.51 -478.54 -2.64 -20.64 16 14 C 0.11 2.00 5.31 86.38 0.46 2.46 16 15 C 0.11 1.47 3.28 30.59 0.10 1.57 16 16 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 17 O -0.56 -8.44 13.25 -144.34 -1.91 -10.35 16 18 C 0.03 0.27 4.37 71.98 0.31 0.59 16 19 O -0.31 -4.64 10.10 -88.32 -0.89 -5.53 16 20 C 0.11 1.57 6.69 22.49 0.15 1.72 16 21 C -0.18 -2.13 9.04 22.36 0.20 -1.93 16 22 C -0.12 -1.43 10.02 22.30 0.22 -1.21 16 23 C 0.04 0.53 7.30 22.37 0.16 0.69 16 24 F -0.15 -2.58 17.27 44.97 0.78 -1.80 16 25 C -0.11 -1.40 10.02 22.30 0.22 -1.18 16 26 C -0.13 -1.72 9.98 22.36 0.22 -1.49 16 27 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 28 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 29 H 0.01 0.52 7.57 -2.38 -0.02 0.50 16 30 H 0.40 14.20 8.34 -92.71 -0.77 13.43 16 31 H 0.41 8.44 8.49 -92.71 -0.79 7.65 16 32 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.39 3.52 9.04 -74.06 -0.67 2.85 16 35 H 0.09 0.59 7.65 -2.39 -0.02 0.57 16 36 H 0.09 0.68 7.67 -2.39 -0.02 0.66 16 37 H 0.16 1.13 6.30 -2.91 -0.02 1.11 16 38 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 39 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 40 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -74.16 351.58 -1.71 -75.86 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -1.18 Total: 19.36 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 4.69 Total: 13.03 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -5.01 Total: -107.43 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -2.87 Total: -44.71 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.69 kcal Total: -74.16 -1.71 -75.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426441040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.807 kcal (2) G-P(sol) polarization free energy of solvation -74.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds