Wall clock time and date at job start Fri Apr 10 2020 18:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99925 * 2 1 4 4 H 1.48502 * 109.47494 * 269.99898 * 3 2 1 5 5 H 1.48504 * 109.47105 * 29.99969 * 3 2 1 6 6 H 1.48505 * 109.47276 * 149.99601 * 3 2 1 7 7 C 1.37878 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00136 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00151 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47284 * 180.02562 * 9 7 2 11 11 C 1.34772 * 119.99945 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00228 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00077 * 179.97438 * 11 10 9 14 14 C 1.46507 * 120.00404 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47237 * 179.97438 * 14 13 11 16 16 H 1.09009 * 109.47040 * 60.00225 * 15 14 13 17 17 O 1.42904 * 109.47447 * 300.00568 * 15 14 13 18 18 C 1.53001 * 109.47291 * 179.97438 * 15 14 13 19 19 O 1.42902 * 109.47329 * 185.00184 * 18 15 14 20 20 C 1.35946 * 116.99599 * 180.02562 * 19 18 15 21 21 C 1.38705 * 120.02438 * 179.97438 * 20 19 18 22 22 C 1.38152 * 119.96614 * 179.69405 * 21 20 19 23 23 C 1.38454 * 120.03139 * 0.28380 * 22 21 20 24 24 F 1.35096 * 119.96942 * 179.97438 * 23 22 21 25 25 C 1.38457 * 120.06079 * 359.97015 * 23 22 21 26 26 C 1.38152 * 120.02854 * 0.02562 * 25 23 22 27 27 H 0.96996 * 119.99976 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.46641 * 60.00357 * 9 7 2 29 29 H 1.08997 * 109.47275 * 300.00805 * 9 7 2 30 30 H 0.96997 * 119.99878 * 359.97438 * 10 9 7 31 31 H 0.97008 * 120.00220 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.46243 * 60.00166 * 14 13 11 33 33 H 1.08996 * 109.47138 * 300.00470 * 14 13 11 34 34 H 0.96698 * 113.99653 * 299.99595 * 17 15 14 35 35 H 1.09005 * 109.46624 * 65.00136 * 18 15 14 36 36 H 1.08995 * 109.46914 * 305.00760 * 18 15 14 37 37 H 1.08002 * 120.02027 * 359.97438 * 21 20 19 38 38 H 1.08000 * 119.98455 * 180.29891 * 22 21 20 39 39 H 1.07999 * 119.98352 * 180.02562 * 25 23 22 40 40 H 1.07994 * 120.01250 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2512 -2.4992 0.0017 10 7 2.2032 -3.6127 0.0027 11 6 1.7539 -4.8833 0.0033 12 8 0.5585 -5.1055 0.0035 13 7 2.6297 -5.9077 0.0037 14 6 2.1414 -7.2890 0.0049 15 6 3.3314 -8.2506 0.0045 16 1 3.9377 -8.0788 0.8940 17 8 4.1244 -8.0267 -1.1630 18 6 2.8215 -9.6931 0.0064 19 8 3.9283 -10.5895 0.1235 20 6 3.6463 -11.9193 0.1401 21 6 4.6732 -12.8451 0.2509 22 6 4.3848 -14.1960 0.2740 23 6 3.0720 -14.6260 0.1806 24 9 2.7915 -15.9473 0.2028 25 6 2.0465 -13.7030 0.0646 26 6 2.3320 -12.3516 0.0413 27 1 -0.4850 0.8400 -0.0004 28 1 0.6242 -2.5575 -0.8881 29 1 0.6247 -2.5563 0.8919 30 1 3.1568 -3.4354 0.0022 31 1 3.5835 -5.7305 0.0039 32 1 1.5355 -7.4608 -0.8848 33 1 1.5362 -7.4596 0.8952 34 1 3.6483 -8.1617 -1.9937 35 1 2.2899 -9.8918 -0.9242 36 1 2.1455 -9.8384 0.8490 37 1 5.6973 -12.5101 0.3238 38 1 5.1837 -14.9170 0.3652 39 1 1.0229 -14.0398 -0.0078 40 1 1.5319 -11.6319 -0.0487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426441041.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:10 Heat of formation + Delta-G solvation = -142.622174 kcal Electronic energy + Delta-G solvation = -24061.794676 eV Core-core repulsion = 19984.429695 eV Total energy + Delta-G solvation = -4077.364982 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.20854 -40.64654 -39.40579 -38.24633 -37.02435 -34.37229 -33.84479 -32.32875 -31.82644 -31.00254 -29.54368 -27.43243 -25.83023 -23.69164 -22.79298 -22.30102 -21.96193 -20.18201 -18.83262 -18.13426 -17.91597 -17.43239 -17.03897 -16.53617 -15.97395 -15.94998 -15.51228 -15.35513 -15.17307 -14.66805 -14.49567 -14.46272 -14.15108 -13.88742 -13.51814 -13.42106 -13.02418 -12.91797 -12.79395 -12.56933 -11.96961 -11.72836 -11.58076 -11.32670 -11.13656 -10.96547 -10.88817 -10.53305 -10.30801 -9.68308 -9.48909 -9.37653 -8.86836 -8.70436 -8.55772 -7.78833 -6.15948 -4.22511 0.66630 0.75168 2.47283 3.09614 3.24803 3.29312 3.32212 3.38100 3.86503 3.87290 4.01313 4.14925 4.27176 4.32072 4.37630 4.48136 4.53040 4.62116 4.76711 4.88187 5.03774 5.10612 5.16162 5.20263 5.38459 5.56140 5.64083 5.67257 5.69172 5.74287 6.21562 6.71937 6.87410 7.08388 7.26384 7.48788 7.53757 7.55465 7.88707 8.02865 8.75274 8.91356 9.29819 9.46390 10.94278 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.051343 B = 0.001719 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.218397 B =16287.999694 C =16717.559435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.727 5.727 11 C 0.693 3.307 12 O -0.603 6.603 13 N -0.752 5.752 14 C 0.115 3.885 15 C 0.101 3.899 16 H 0.117 0.883 17 O -0.547 6.547 18 C 0.028 3.972 19 O -0.299 6.299 20 C 0.124 3.876 21 C -0.123 4.123 22 C -0.113 4.113 23 C 0.055 3.945 24 F -0.142 7.142 25 C -0.111 4.111 26 C -0.183 4.183 27 H 0.266 0.734 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.387 0.613 31 H 0.397 0.603 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.378 0.622 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.006 -27.752 -0.176 29.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.379 5.379 11 C 0.393 3.607 12 O -0.483 6.483 13 N -0.410 5.410 14 C -0.011 4.011 15 C 0.041 3.959 16 H 0.135 0.865 17 O -0.352 6.352 18 C -0.048 4.048 19 O -0.212 6.212 20 C 0.078 3.922 21 C -0.142 4.142 22 C -0.132 4.132 23 C 0.036 3.964 24 F -0.121 7.121 25 C -0.130 4.130 26 C -0.201 4.201 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.220 0.780 31 H 0.232 0.768 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.226 0.774 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.320 -27.585 0.287 28.814 hybrid contribution 0.428 0.648 -0.383 0.866 sum 8.748 -26.938 -0.096 28.322 Atomic orbital electron populations 1.69980 1.06090 1.27274 1.48964 1.24947 0.94923 0.99419 0.94749 0.86401 0.79591 0.82610 0.78199 1.20480 1.21022 1.19775 1.21234 0.93309 0.90427 1.53112 0.91900 1.18993 0.87776 0.81069 0.97620 1.45712 1.10903 1.04331 1.76981 1.16121 0.85077 0.81096 0.78412 1.90872 1.14262 1.84276 1.58852 1.44919 1.09312 1.04253 1.82550 1.21521 0.95000 0.81355 1.03246 1.22150 0.93172 0.89672 0.90928 0.86524 1.86647 1.40785 1.92202 1.15608 1.23553 0.88757 0.89720 1.02783 1.86156 1.34616 1.12722 1.87728 1.19069 0.93161 0.83705 0.96256 1.20316 0.99228 0.90548 1.04105 1.20980 0.95313 0.96029 1.00844 1.17597 0.93892 0.77841 1.07051 1.91495 1.94439 1.31812 1.94343 1.20970 0.99350 0.92313 1.00381 1.21182 0.95882 0.96323 1.06748 0.92467 0.95723 0.95717 0.78032 0.76841 0.91342 0.90703 0.77417 0.90946 0.90325 0.83978 0.84019 0.84381 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.10 5.43 -5.19 -0.03 7.08 16 10 N -0.73 -15.40 5.55 -66.42 -0.37 -15.77 16 11 C 0.69 13.92 8.57 -86.92 -0.74 13.17 16 12 O -0.60 -14.67 16.34 5.29 0.09 -14.59 16 13 N -0.75 -10.51 5.45 -65.23 -0.36 -10.86 16 14 C 0.11 1.23 5.34 -4.04 -0.02 1.21 16 15 C 0.10 0.81 3.33 -26.73 -0.09 0.72 16 16 H 0.12 0.96 8.14 -51.92 -0.42 0.53 16 17 O -0.55 -4.89 13.05 -40.05 -0.52 -5.42 16 18 C 0.03 0.19 4.38 37.16 0.16 0.35 16 19 O -0.30 -2.59 10.10 -24.39 -0.25 -2.84 16 20 C 0.12 1.01 6.69 -39.24 -0.26 0.74 16 21 C -0.12 -0.90 9.98 -39.44 -0.39 -1.30 16 22 C -0.11 -0.78 10.02 -39.53 -0.40 -1.18 16 23 C 0.06 0.45 7.30 -39.42 -0.29 0.16 16 24 F -0.14 -1.27 17.27 2.25 0.04 -1.24 16 25 C -0.11 -0.80 10.02 -39.53 -0.40 -1.20 16 26 C -0.18 -1.29 9.04 -39.44 -0.36 -1.65 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.39 7.04 8.34 -40.82 -0.34 6.70 16 31 H 0.40 4.72 8.36 -40.82 -0.34 4.38 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.38 2.32 9.05 45.56 0.41 2.73 16 35 H 0.07 0.38 7.65 -51.93 -0.40 -0.01 16 36 H 0.08 0.43 7.67 -51.93 -0.40 0.04 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.14 0.74 6.30 -52.49 -0.33 0.41 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -34.77 354.88 -7.85 -42.61 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -4.31 Total: 7.57 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -3.23 Total: 4.71 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.01 Total: -51.96 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.68 Total: -22.84 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.77 -7.85 -42.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426441041.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.008 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds