Wall clock time and date at job start Fri Apr 10 2020 18:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99925 * 2 1 4 4 H 1.48502 * 109.47494 * 269.99898 * 3 2 1 5 5 H 1.48504 * 109.47105 * 29.99969 * 3 2 1 6 6 H 1.48505 * 109.47276 * 149.99601 * 3 2 1 7 7 C 1.37878 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00136 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00151 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47284 * 180.02562 * 9 7 2 11 11 C 1.34772 * 119.99945 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00228 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00077 * 179.97438 * 11 10 9 14 14 C 1.46507 * 120.00404 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47237 * 179.97438 * 14 13 11 16 16 H 1.09009 * 109.47040 * 60.00225 * 15 14 13 17 17 O 1.42904 * 109.47447 * 300.00568 * 15 14 13 18 18 C 1.53001 * 109.47291 * 179.97438 * 15 14 13 19 19 O 1.42902 * 109.47329 * 185.00184 * 18 15 14 20 20 C 1.35946 * 116.99599 * 180.02562 * 19 18 15 21 21 C 1.38705 * 120.02438 * 179.97438 * 20 19 18 22 22 C 1.38152 * 119.96614 * 179.69405 * 21 20 19 23 23 C 1.38454 * 120.03139 * 0.28380 * 22 21 20 24 24 F 1.35096 * 119.96942 * 179.97438 * 23 22 21 25 25 C 1.38457 * 120.06079 * 359.97015 * 23 22 21 26 26 C 1.38152 * 120.02854 * 0.02562 * 25 23 22 27 27 H 0.96996 * 119.99976 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.46641 * 60.00357 * 9 7 2 29 29 H 1.08997 * 109.47275 * 300.00805 * 9 7 2 30 30 H 0.96997 * 119.99878 * 359.97438 * 10 9 7 31 31 H 0.97008 * 120.00220 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.46243 * 60.00166 * 14 13 11 33 33 H 1.08996 * 109.47138 * 300.00470 * 14 13 11 34 34 H 0.96698 * 113.99653 * 299.99595 * 17 15 14 35 35 H 1.09005 * 109.46624 * 65.00136 * 18 15 14 36 36 H 1.08995 * 109.46914 * 305.00760 * 18 15 14 37 37 H 1.08002 * 120.02027 * 359.97438 * 21 20 19 38 38 H 1.08000 * 119.98455 * 180.29891 * 22 21 20 39 39 H 1.07999 * 119.98352 * 180.02562 * 25 23 22 40 40 H 1.07994 * 120.01250 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2512 -2.4992 0.0017 10 7 2.2032 -3.6127 0.0027 11 6 1.7539 -4.8833 0.0033 12 8 0.5585 -5.1055 0.0035 13 7 2.6297 -5.9077 0.0037 14 6 2.1414 -7.2890 0.0049 15 6 3.3314 -8.2506 0.0045 16 1 3.9377 -8.0788 0.8940 17 8 4.1244 -8.0267 -1.1630 18 6 2.8215 -9.6931 0.0064 19 8 3.9283 -10.5895 0.1235 20 6 3.6463 -11.9193 0.1401 21 6 4.6732 -12.8451 0.2509 22 6 4.3848 -14.1960 0.2740 23 6 3.0720 -14.6260 0.1806 24 9 2.7915 -15.9473 0.2028 25 6 2.0465 -13.7030 0.0646 26 6 2.3320 -12.3516 0.0413 27 1 -0.4850 0.8400 -0.0004 28 1 0.6242 -2.5575 -0.8881 29 1 0.6247 -2.5563 0.8919 30 1 3.1568 -3.4354 0.0022 31 1 3.5835 -5.7305 0.0039 32 1 1.5355 -7.4608 -0.8848 33 1 1.5362 -7.4596 0.8952 34 1 3.6483 -8.1617 -1.9937 35 1 2.2899 -9.8918 -0.9242 36 1 2.1455 -9.8384 0.8490 37 1 5.6973 -12.5101 0.3238 38 1 5.1837 -14.9170 0.3652 39 1 1.0229 -14.0398 -0.0078 40 1 1.5319 -11.6319 -0.0487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426441041.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:10 Heat of formation + Delta-G solvation = -170.218756 kcal Electronic energy + Delta-G solvation = -24062.991354 eV Core-core repulsion = 19984.429695 eV Total energy + Delta-G solvation = -4078.561659 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.83399 -41.25746 -40.84288 -39.02406 -37.71546 -36.16483 -35.22814 -34.28346 -32.39137 -31.75778 -30.25788 -29.17355 -26.89535 -24.68076 -24.08222 -23.17669 -22.66846 -21.79179 -19.80625 -19.37559 -18.58794 -18.11050 -17.99065 -17.67202 -17.31679 -16.80979 -16.65827 -16.44548 -16.31755 -15.74824 -15.62548 -15.34654 -15.04127 -14.83411 -14.60626 -14.31482 -14.22770 -14.00310 -13.96327 -13.49011 -13.38194 -13.14667 -12.88489 -12.69654 -12.21513 -12.18187 -11.86958 -11.72265 -11.46097 -11.35731 -11.12605 -10.79044 -10.28200 -10.19903 -9.57715 -9.13084 -8.27217 -6.43338 0.15012 0.18382 1.44692 1.47287 1.57863 1.67010 2.20883 2.25142 2.41981 2.55500 3.07864 3.31815 3.36709 3.51712 3.66840 3.70576 3.81916 3.85991 3.95730 4.12038 4.28319 4.31179 4.39855 4.61727 4.66030 4.89945 4.95014 5.09973 5.11588 5.14368 5.20841 5.29088 5.48435 5.51539 5.67670 5.69241 5.86816 6.26129 6.31786 6.68497 6.72975 7.25861 7.31602 7.72874 8.84978 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.051343 B = 0.001719 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.218397 B =16287.999694 C =16717.559435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.285 3.715 10 N -0.724 5.724 11 C 0.692 3.308 12 O -0.649 6.649 13 N -0.728 5.728 14 C 0.111 3.889 15 C 0.117 3.883 16 H 0.118 0.882 17 O -0.561 6.561 18 C 0.027 3.973 19 O -0.313 6.313 20 C 0.112 3.888 21 C -0.131 4.131 22 C -0.112 4.112 23 C 0.036 3.964 24 F -0.151 7.151 25 C -0.115 4.115 26 C -0.184 4.184 27 H 0.269 0.731 28 H -0.013 1.013 29 H -0.013 1.013 30 H 0.404 0.596 31 H 0.412 0.588 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.390 0.610 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.152 0.848 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.942 -27.950 -0.243 30.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.594 4.594 8 H 0.101 0.899 9 C 0.161 3.839 10 N -0.377 5.377 11 C 0.391 3.609 12 O -0.532 6.532 13 N -0.386 5.386 14 C -0.014 4.014 15 C 0.057 3.943 16 H 0.136 0.864 17 O -0.368 6.368 18 C -0.048 4.048 19 O -0.227 6.227 20 C 0.066 3.934 21 C -0.149 4.149 22 C -0.131 4.131 23 C 0.017 3.983 24 F -0.130 7.130 25 C -0.134 4.134 26 C -0.203 4.203 27 H 0.077 0.923 28 H 0.005 0.995 29 H 0.005 0.995 30 H 0.240 0.760 31 H 0.248 0.752 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.240 0.760 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.170 0.830 38 H 0.177 0.823 39 H 0.170 0.830 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.332 -27.847 0.211 29.703 hybrid contribution -0.185 0.600 -0.374 0.731 sum 10.147 -27.247 -0.163 29.076 Atomic orbital electron populations 1.70139 1.08208 1.28533 1.49971 1.26046 0.95785 1.03805 0.93899 0.85147 0.78440 0.76990 0.78552 1.19643 1.20965 1.18041 1.21616 0.94324 0.90563 1.52867 0.89897 1.18413 0.88097 0.83309 0.94042 1.45303 1.10911 1.03917 1.77591 1.16271 0.85047 0.81586 0.77961 1.90841 1.16616 1.84959 1.60750 1.44701 1.09214 1.04263 1.80388 1.21751 0.96406 0.79775 1.03423 1.21928 0.91707 0.89831 0.90847 0.86431 1.86623 1.41452 1.92304 1.16444 1.23570 0.88497 0.88443 1.04323 1.86111 1.35473 1.13098 1.87970 1.19259 0.93801 0.83583 0.96729 1.20514 0.99775 0.90615 1.04043 1.21183 0.95488 0.96338 1.00062 1.17870 0.94723 0.77653 1.08085 1.91470 1.94545 1.32463 1.94533 1.21189 0.99982 0.92345 0.99898 1.21372 0.96050 0.96582 1.06282 0.92258 0.99543 0.99539 0.76045 0.75171 0.91106 0.90698 0.76015 0.89314 0.88973 0.82970 0.82306 0.82999 0.82612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.99 42.14 29.54 68.60 2.03 44.17 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.56 -30.20 9.28 25.60 0.24 -29.97 16 8 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 9 C 0.28 15.68 5.43 85.63 0.46 16.15 16 10 N -0.72 -30.76 5.55 -482.31 -2.68 -33.44 16 11 C 0.69 27.77 8.57 179.06 1.53 29.30 16 12 O -0.65 -32.26 16.34 -3.98 -0.07 -32.33 16 13 N -0.73 -19.35 5.45 -478.54 -2.61 -21.96 16 14 C 0.11 2.20 5.34 86.38 0.46 2.66 16 15 C 0.12 1.61 3.33 30.59 0.10 1.72 16 16 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 17 O -0.56 -8.74 13.05 -144.37 -1.88 -10.63 16 18 C 0.03 0.30 4.38 71.98 0.31 0.62 16 19 O -0.31 -4.81 10.10 -88.34 -0.89 -5.70 16 20 C 0.11 1.64 6.69 22.49 0.15 1.79 16 21 C -0.13 -1.75 9.98 22.36 0.22 -1.52 16 22 C -0.11 -1.43 10.02 22.30 0.22 -1.21 16 23 C 0.04 0.55 7.30 22.37 0.16 0.71 16 24 F -0.15 -2.64 17.27 44.97 0.78 -1.86 16 25 C -0.12 -1.51 10.02 22.30 0.22 -1.29 16 26 C -0.18 -2.29 9.04 22.36 0.20 -2.08 16 27 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 28 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 29 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 30 H 0.40 14.25 8.34 -92.71 -0.77 13.47 16 31 H 0.41 8.89 8.36 -92.70 -0.78 8.12 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.39 3.89 9.05 -74.06 -0.67 3.22 16 35 H 0.09 0.70 7.65 -2.38 -0.02 0.68 16 36 H 0.09 0.78 7.67 -2.39 -0.02 0.76 16 37 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 39 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.16 1.29 6.30 -2.91 -0.02 1.27 16 Total: -1.00 -76.65 354.88 -1.39 -78.04 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -1.11 Total: 21.71 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 4.76 Total: 17.57 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -5.00 Total: -110.97 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -2.84 Total: -48.66 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.86 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -76.65 -1.39 -78.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426441041.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.179 kcal (2) G-P(sol) polarization free energy of solvation -76.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds