Wall clock time and date at job start Fri Apr 10 2020 18:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.31087 * 120.00498 * 2 1 4 4 N 1.35582 * 125.81721 * 179.97438 * 3 2 1 5 5 H 0.97007 * 122.96881 * 359.97438 * 4 3 2 6 6 N 1.37802 * 114.05404 * 179.97438 * 4 3 2 7 7 C 1.27567 * 116.54487 * 0.02562 * 6 4 3 8 8 C 1.50705 * 124.80778 * 180.02562 * 7 6 4 9 9 C 1.50694 * 109.47478 * 89.97039 * 8 7 6 10 10 O 1.21281 * 119.99833 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00394 * 180.02562 * 9 8 7 12 12 C 1.46494 * 120.00325 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47127 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47146 * 300.00061 * 13 12 11 15 15 C 1.52999 * 109.47055 * 59.99855 * 13 12 11 16 16 C 1.52995 * 109.47344 * 179.97438 * 13 12 11 17 17 C 1.50705 * 109.47627 * 179.97438 * 16 13 12 18 18 H 1.08001 * 119.99638 * 0.02562 * 17 16 13 19 19 C 1.37870 * 120.00084 * 179.97438 * 17 16 13 20 20 N 1.31514 * 120.00307 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99919 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47164 * 89.99988 * 21 19 17 23 23 H 1.48493 * 109.47273 * 210.00508 * 21 19 17 24 24 H 1.48502 * 109.46951 * 330.00277 * 21 19 17 25 25 S 1.75878 * 110.38385 * 359.76535 * 7 6 4 26 26 H 1.09002 * 109.47391 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46813 * 60.00098 * 1 2 3 28 28 H 1.09004 * 109.47041 * 300.00225 * 1 2 3 29 29 H 1.08997 * 109.47252 * 209.97454 * 8 7 6 30 30 H 1.09002 * 109.46943 * 329.96822 * 8 7 6 31 31 H 0.97006 * 119.99614 * 359.97438 * 11 9 8 32 32 H 1.08995 * 109.47338 * 299.99597 * 12 11 9 33 33 H 1.08997 * 109.47656 * 60.00047 * 12 11 9 34 34 H 1.08998 * 109.47354 * 60.00226 * 14 13 12 35 35 H 1.09008 * 109.46991 * 180.02562 * 14 13 12 36 36 H 1.09001 * 109.47478 * 299.99447 * 14 13 12 37 37 H 1.09004 * 109.47133 * 60.00482 * 15 13 12 38 38 H 1.09008 * 109.47047 * 179.97438 * 15 13 12 39 39 H 1.08998 * 109.47392 * 299.99741 * 15 13 12 40 40 H 1.09006 * 109.47150 * 300.00335 * 16 13 12 41 41 H 1.09002 * 109.47180 * 59.99852 * 16 13 12 42 42 H 0.96999 * 119.99814 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1205 1.1352 0.0000 4 7 3.4694 1.2725 0.0005 5 1 4.0770 0.5163 0.0013 6 7 3.9007 2.5813 -0.0002 7 6 2.9953 3.4799 -0.0007 8 6 3.2565 4.9642 -0.0020 9 6 3.3438 5.4576 -1.4232 10 8 3.2079 4.6805 -2.3443 11 7 3.5740 6.7623 -1.6706 12 6 3.6584 7.2421 -3.0522 13 6 3.9236 8.7490 -3.0535 14 6 2.7819 9.4684 -2.3326 15 6 5.2425 9.0353 -2.3327 16 6 4.0123 9.2500 -4.4964 17 6 4.2730 10.7344 -4.4977 18 1 4.3665 11.2670 -3.5628 19 6 4.3932 11.4121 -5.6923 20 7 4.2799 10.7634 -6.8307 21 14 4.7170 13.2519 -5.6939 22 1 6.1816 13.4967 -5.6933 23 1 4.1140 13.8596 -6.9072 24 1 4.1127 13.8619 -4.4823 25 16 1.3991 2.7414 -0.0071 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 2.4429 5.4767 0.5112 30 1 4.1959 5.1682 0.5119 31 1 3.6831 7.3838 -0.9338 32 1 4.4715 6.7294 -3.5659 33 1 2.7186 7.0387 -3.5656 34 1 2.7191 9.1115 -1.3046 35 1 2.9707 10.5420 -2.3339 36 1 1.8423 9.2646 -2.8460 37 1 6.0559 8.5228 -2.8464 38 1 5.4317 10.1088 -2.3341 39 1 5.1797 8.6783 -1.3048 40 1 4.8260 8.7374 -5.0096 41 1 3.0730 9.0460 -5.0102 42 1 4.3641 11.2404 -7.6711 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489883544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:33 Heat of formation + Delta-G solvation = 19.877364 kcal Electronic energy + Delta-G solvation = -22994.078641 eV Core-core repulsion = 19522.266095 eV Total energy + Delta-G solvation = -3471.812546 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.37127 -39.58335 -37.24798 -36.01005 -33.73311 -33.13522 -32.12309 -29.77201 -27.27574 -27.00527 -26.56578 -25.97897 -23.72189 -22.99565 -21.24149 -20.05657 -19.38161 -18.39051 -17.34806 -17.11367 -16.40457 -15.86140 -15.72051 -15.53871 -15.10976 -14.58700 -14.13365 -14.01034 -13.87668 -13.58369 -13.56668 -13.09291 -12.80649 -12.72546 -12.61728 -12.09535 -12.07373 -11.43999 -11.20563 -11.05298 -10.88556 -10.81311 -10.68071 -10.45904 -10.29669 -10.06391 -9.93034 -9.90347 -9.73938 -9.22580 -8.96718 -8.85886 -8.38908 -8.10769 -6.02813 -4.04402 0.59470 0.99202 1.06873 1.68959 2.04587 2.60111 3.26991 3.28827 3.36243 3.37672 3.81980 4.37840 4.42550 4.66440 4.74894 4.95856 5.08525 5.13258 5.24263 5.32669 5.44283 5.46538 5.56565 5.68887 6.10566 6.15503 6.21768 6.32940 6.45771 6.51282 6.57931 6.67911 6.84947 7.00754 7.02911 7.07297 7.44012 7.55875 7.60784 7.72079 7.95495 8.22967 8.37145 9.00403 9.58980 11.08566 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.037064 B = 0.002264 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.278804 B =12362.024932 C =12515.120424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.563 5.563 3 C 0.343 3.657 4 N -0.516 5.516 5 H 0.448 0.552 6 N -0.206 5.206 7 C 0.102 3.898 8 C -0.064 4.064 9 C 0.511 3.489 10 O -0.532 6.532 11 N -0.716 5.716 12 C 0.128 3.872 13 C -0.072 4.072 14 C -0.128 4.128 15 C -0.128 4.128 16 C 0.035 3.965 17 C -0.512 4.512 18 H 0.060 0.940 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.274 1.274 25 S -0.006 6.006 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.400 0.600 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.029 0.971 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.029 0.971 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 -14.051 18.399 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.297 5.297 3 C -0.046 4.046 4 N -0.251 5.251 5 H 0.296 0.704 6 N -0.019 5.019 7 C -0.201 4.201 8 C -0.108 4.108 9 C 0.294 3.706 10 O -0.408 6.408 11 N -0.368 5.368 12 C 0.006 3.994 13 C -0.073 4.073 14 C -0.185 4.185 15 C -0.185 4.185 16 C -0.002 4.002 17 C -0.550 4.550 18 H 0.078 0.922 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 S 0.222 5.778 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.236 0.764 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.845 -15.246 17.520 23.724 hybrid contribution 0.593 1.177 0.092 1.321 sum -4.252 -14.069 17.612 22.939 Atomic orbital electron populations 1.22262 0.85159 1.03385 1.00970 1.71812 1.10027 1.17952 1.29887 1.25355 0.89085 0.93093 0.97053 1.45573 1.02634 1.04254 1.72658 0.70403 1.73494 1.24700 0.88578 1.15086 1.26571 0.91536 0.99115 1.02920 1.20290 1.06995 0.85678 0.97795 1.20022 0.77677 0.82973 0.89918 1.90770 1.49262 1.54947 1.45854 1.46120 1.72139 1.07985 1.10557 1.21675 1.01824 0.95498 0.80415 1.20910 0.95011 0.90677 1.00687 1.21771 0.97939 1.01767 0.97024 1.21774 0.96928 1.02770 0.97050 1.19096 0.97482 0.96018 0.87607 1.21167 1.48612 0.93090 0.92110 0.92235 1.25020 0.95618 0.98105 0.95797 1.69962 1.50271 1.35818 0.97279 0.86644 0.78327 0.85826 0.77480 1.20779 1.21349 1.19937 1.86256 1.08691 0.99359 1.83503 0.89335 0.92399 0.92546 0.85656 0.85257 0.76413 0.91642 0.91617 0.95182 0.91372 0.93321 0.93328 0.91383 0.95170 0.96341 0.96323 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.44 59.85 0.62 0.93 16 2 N -0.56 -6.53 11.06 -68.18 -0.75 -7.28 16 3 C 0.34 3.94 8.43 -89.39 -0.75 3.18 16 4 N -0.52 -5.54 6.93 30.42 0.21 -5.33 16 5 H 0.45 3.82 8.96 -184.29 -1.65 2.17 16 6 N -0.21 -2.36 11.96 32.98 0.39 -1.96 16 7 C 0.10 1.08 6.08 -14.05 -0.09 1.00 16 8 C -0.06 -0.52 6.30 -29.04 -0.18 -0.70 16 9 C 0.51 6.47 7.82 -10.99 -0.09 6.38 16 10 O -0.53 -9.23 16.03 5.56 0.09 -9.14 16 11 N -0.72 -8.78 4.96 -60.30 -0.30 -9.08 16 12 C 0.13 2.09 4.56 -4.04 -0.02 2.07 16 13 C -0.07 -1.28 0.54 -154.51 -0.08 -1.36 16 14 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 15 C -0.13 -2.07 8.05 37.16 0.30 -1.77 16 16 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 17 C -0.51 -13.18 7.65 -34.44 -0.26 -13.44 16 18 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 19 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 20 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 21 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 S -0.01 -0.06 22.42 -107.50 -2.41 -2.47 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.40 3.79 6.16 -40.82 -0.25 3.54 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 35 H 0.07 1.21 6.62 -51.92 -0.34 0.86 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.20 6.62 -51.92 -0.34 0.86 16 39 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -32.84 360.56 -9.47 -42.30 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.39 Total: 0.36 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -0.46 Total: -3.33 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.29 Total: -48.92 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.41 Total: -2.47 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.84 -9.47 -42.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489883544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.180 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds