Wall clock time and date at job start Fri Apr 10 2020 18:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.31087 * 120.00498 * 2 1 4 4 N 1.35582 * 125.81721 * 179.97438 * 3 2 1 5 5 H 0.97007 * 122.96881 * 359.97438 * 4 3 2 6 6 N 1.37802 * 114.05404 * 179.97438 * 4 3 2 7 7 C 1.27567 * 116.54487 * 0.02562 * 6 4 3 8 8 C 1.50705 * 124.80778 * 180.02562 * 7 6 4 9 9 C 1.50694 * 109.47478 * 89.97039 * 8 7 6 10 10 O 1.21281 * 119.99833 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00394 * 180.02562 * 9 8 7 12 12 C 1.46494 * 120.00325 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47127 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47146 * 300.00061 * 13 12 11 15 15 C 1.52999 * 109.47055 * 59.99855 * 13 12 11 16 16 C 1.52995 * 109.47344 * 179.97438 * 13 12 11 17 17 C 1.50705 * 109.47627 * 179.97438 * 16 13 12 18 18 H 1.08001 * 119.99638 * 0.02562 * 17 16 13 19 19 C 1.37870 * 120.00084 * 179.97438 * 17 16 13 20 20 N 1.31514 * 120.00307 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99919 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47164 * 89.99988 * 21 19 17 23 23 H 1.48493 * 109.47273 * 210.00508 * 21 19 17 24 24 H 1.48502 * 109.46951 * 330.00277 * 21 19 17 25 25 S 1.75878 * 110.38385 * 359.76535 * 7 6 4 26 26 H 1.09002 * 109.47391 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46813 * 60.00098 * 1 2 3 28 28 H 1.09004 * 109.47041 * 300.00225 * 1 2 3 29 29 H 1.08997 * 109.47252 * 209.97454 * 8 7 6 30 30 H 1.09002 * 109.46943 * 329.96822 * 8 7 6 31 31 H 0.97006 * 119.99614 * 359.97438 * 11 9 8 32 32 H 1.08995 * 109.47338 * 299.99597 * 12 11 9 33 33 H 1.08997 * 109.47656 * 60.00047 * 12 11 9 34 34 H 1.08998 * 109.47354 * 60.00226 * 14 13 12 35 35 H 1.09008 * 109.46991 * 180.02562 * 14 13 12 36 36 H 1.09001 * 109.47478 * 299.99447 * 14 13 12 37 37 H 1.09004 * 109.47133 * 60.00482 * 15 13 12 38 38 H 1.09008 * 109.47047 * 179.97438 * 15 13 12 39 39 H 1.08998 * 109.47392 * 299.99741 * 15 13 12 40 40 H 1.09006 * 109.47150 * 300.00335 * 16 13 12 41 41 H 1.09002 * 109.47180 * 59.99852 * 16 13 12 42 42 H 0.96999 * 119.99814 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1205 1.1352 0.0000 4 7 3.4694 1.2725 0.0005 5 1 4.0770 0.5163 0.0013 6 7 3.9007 2.5813 -0.0002 7 6 2.9953 3.4799 -0.0007 8 6 3.2565 4.9642 -0.0020 9 6 3.3438 5.4576 -1.4232 10 8 3.2079 4.6805 -2.3443 11 7 3.5740 6.7623 -1.6706 12 6 3.6584 7.2421 -3.0522 13 6 3.9236 8.7490 -3.0535 14 6 2.7819 9.4684 -2.3326 15 6 5.2425 9.0353 -2.3327 16 6 4.0123 9.2500 -4.4964 17 6 4.2730 10.7344 -4.4977 18 1 4.3665 11.2670 -3.5628 19 6 4.3932 11.4121 -5.6923 20 7 4.2799 10.7634 -6.8307 21 14 4.7170 13.2519 -5.6939 22 1 6.1816 13.4967 -5.6933 23 1 4.1140 13.8596 -6.9072 24 1 4.1127 13.8619 -4.4823 25 16 1.3991 2.7414 -0.0071 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 2.4429 5.4767 0.5112 30 1 4.1959 5.1682 0.5119 31 1 3.6831 7.3838 -0.9338 32 1 4.4715 6.7294 -3.5659 33 1 2.7186 7.0387 -3.5656 34 1 2.7191 9.1115 -1.3046 35 1 2.9707 10.5420 -2.3339 36 1 1.8423 9.2646 -2.8460 37 1 6.0559 8.5228 -2.8464 38 1 5.4317 10.1088 -2.3341 39 1 5.1797 8.6783 -1.3048 40 1 4.8260 8.7374 -5.0096 41 1 3.0730 9.0460 -5.0102 42 1 4.3641 11.2404 -7.6711 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489883544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:32 Heat of formation + Delta-G solvation = -4.682572 kcal Electronic energy + Delta-G solvation = -22995.143639 eV Core-core repulsion = 19522.266095 eV Total energy + Delta-G solvation = -3472.877545 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.25849 -40.60658 -38.64801 -36.82843 -35.22824 -34.11443 -33.70875 -30.63124 -29.02047 -27.97615 -27.88682 -27.18384 -24.93170 -24.40025 -22.28175 -21.01411 -20.17587 -19.76708 -18.34322 -18.18001 -18.13276 -16.91100 -16.70855 -16.46625 -16.41302 -16.10099 -15.18687 -15.13053 -14.98745 -14.64750 -14.43562 -14.26764 -14.21003 -13.89235 -13.88935 -13.37275 -13.18415 -12.82991 -12.69358 -12.51962 -12.27770 -12.25789 -12.18754 -11.94091 -11.59209 -11.48009 -11.18980 -10.88861 -10.82540 -10.67777 -10.53537 -10.49404 -10.03616 -8.91245 -8.12080 -6.19642 -0.19627 0.18284 0.27464 0.86328 1.30028 1.44341 1.44590 1.54825 1.63250 2.27291 2.46963 3.07959 3.22668 3.62334 3.90448 4.00461 4.07442 4.14209 4.28914 4.38599 4.45973 4.51741 4.57347 4.74760 4.78762 4.81043 4.86121 5.04069 5.16761 5.19542 5.45226 5.50554 5.56425 5.60261 5.61598 5.79018 5.85932 5.93382 6.05779 6.32807 6.59816 6.66052 6.96426 7.28075 7.48293 9.00373 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.037064 B = 0.002264 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.278804 B =12362.024932 C =12515.120424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.583 5.583 3 C 0.330 3.670 4 N -0.517 5.517 5 H 0.454 0.546 6 N -0.221 5.221 7 C 0.096 3.904 8 C -0.055 4.055 9 C 0.512 3.488 10 O -0.584 6.584 11 N -0.702 5.702 12 C 0.143 3.857 13 C -0.064 4.064 14 C -0.123 4.123 15 C -0.124 4.124 16 C 0.037 3.963 17 C -0.510 4.510 18 H 0.075 0.925 19 C -0.008 4.008 20 N -0.940 5.940 21 Si 0.958 3.042 22 H -0.277 1.277 23 H -0.292 1.292 24 H -0.257 1.257 25 S 0.000 6.000 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.168 0.832 30 H 0.166 0.834 31 H 0.419 0.581 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.036 0.964 37 H 0.034 0.966 38 H 0.054 0.946 39 H 0.078 0.922 40 H -0.017 1.017 41 H -0.015 1.015 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 -13.059 21.794 25.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.318 5.318 3 C -0.059 4.059 4 N -0.253 5.253 5 H 0.303 0.697 6 N -0.034 5.034 7 C -0.207 4.207 8 C -0.098 4.098 9 C 0.297 3.703 10 O -0.464 6.464 11 N -0.355 5.355 12 C 0.019 3.981 13 C -0.064 4.064 14 C -0.180 4.180 15 C -0.181 4.181 16 C 0.000 4.000 17 C -0.548 4.548 18 H 0.093 0.907 19 C -0.205 4.205 20 N -0.581 5.581 21 Si 0.784 3.216 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.181 1.181 25 S 0.228 5.772 26 H 0.119 0.881 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.185 0.815 30 H 0.183 0.817 31 H 0.258 0.742 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.953 -14.237 20.978 25.832 hybrid contribution 0.605 0.784 -0.986 1.398 sum -4.348 -13.453 19.992 24.486 Atomic orbital electron populations 1.22382 0.83922 1.04425 1.01374 1.71802 1.11415 1.18508 1.30049 1.25513 0.89423 0.93623 0.97329 1.45629 1.02679 1.04471 1.72554 0.69730 1.73473 1.25346 0.88878 1.15745 1.27051 0.91296 1.00142 1.02201 1.20477 1.10582 0.84096 0.94625 1.20772 0.75927 0.82197 0.91411 1.90765 1.51407 1.56190 1.48060 1.45828 1.71952 1.08589 1.09120 1.21176 0.99948 0.94342 0.82681 1.20698 0.97154 0.91565 0.97030 1.21715 0.96252 1.00663 0.99389 1.21722 0.95114 1.01865 0.99375 1.19000 0.94256 0.95400 0.91387 1.21610 1.46694 0.94051 0.92464 0.90725 1.25968 0.95866 1.03014 0.95610 1.70127 1.52300 1.37757 0.97952 0.85547 0.78249 0.80109 0.77743 1.20275 1.21821 1.18134 1.86165 1.08835 0.98876 1.83298 0.88076 0.92538 0.91434 0.81452 0.81697 0.74180 0.93876 0.93608 0.90314 0.92793 0.94529 0.94700 0.92730 0.90364 0.99842 0.99706 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.44 127.77 1.33 1.84 16 2 N -0.58 -13.15 11.06 -369.61 -4.09 -17.24 16 3 C 0.33 7.31 8.43 179.92 1.52 8.82 16 4 N -0.52 -10.72 6.93 -57.67 -0.40 -11.12 16 5 H 0.45 7.61 8.96 -214.76 -1.93 5.68 16 6 N -0.22 -4.73 11.96 -48.92 -0.59 -5.31 16 7 C 0.10 1.82 6.08 88.73 0.54 2.36 16 8 C -0.05 -0.66 6.30 29.10 0.18 -0.48 16 9 C 0.51 11.65 7.82 87.66 0.69 12.34 16 10 O -0.58 -19.94 16.03 -3.03 -0.05 -19.99 16 11 N -0.70 -15.14 4.96 -463.09 -2.30 -17.44 16 12 C 0.14 4.61 4.56 86.38 0.39 5.00 16 13 C -0.06 -2.22 0.54 -52.18 -0.03 -2.24 16 14 C -0.12 -3.67 8.05 71.98 0.58 -3.09 16 15 C -0.12 -3.73 8.05 71.98 0.58 -3.15 16 16 C 0.04 1.83 4.04 29.85 0.12 1.95 16 17 C -0.51 -26.56 7.65 25.60 0.20 -26.36 16 18 H 0.07 3.60 5.68 -2.91 -0.02 3.58 16 19 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 20 N -0.94 -56.71 13.29 21.44 0.28 -56.42 16 21 Si 0.96 42.82 29.54 68.60 2.03 44.85 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 25 S 0.00 0.00 22.42 -56.49 -1.27 -1.26 16 26 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 0.97 8.14 -2.38 -0.02 0.96 16 29 H 0.17 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.17 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.42 5.78 6.16 -92.70 -0.57 5.20 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.58 6.86 -2.39 -0.02 1.56 16 35 H 0.05 1.78 6.62 -2.38 -0.02 1.76 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.05 1.80 6.62 -2.38 -0.02 1.79 16 39 H 0.08 1.60 6.86 -2.39 -0.02 1.58 16 40 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 41 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 42 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -75.82 360.56 -1.25 -77.07 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -1.44 Total: 9.86 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 6.56 Total: -2.99 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -7.08 Total: -107.53 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.05 Total: -19.99 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.27 Total: -1.26 kcal Total: -75.82 -1.25 -77.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489883544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.386 kcal (2) G-P(sol) polarization free energy of solvation -75.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds