Wall clock time and date at job start Fri Apr 10 2020 18:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47051 * 2 1 4 4 C 1.53007 * 109.46893 * 119.99567 * 2 1 3 5 5 N 1.46500 * 109.46908 * 65.00372 * 4 2 1 6 6 C 1.46823 * 124.33162 * 269.93157 * 5 4 2 7 7 C 1.54477 * 105.44343 * 196.99940 * 6 5 4 8 8 H 1.09003 * 110.97128 * 92.77057 * 7 6 5 9 9 C 1.50703 * 110.97124 * 216.49113 * 7 6 5 10 10 O 1.21290 * 119.99898 * 356.91726 * 9 7 6 11 11 N 1.34777 * 119.99840 * 176.90953 * 9 7 6 12 12 C 1.37104 * 119.99539 * 180.02562 * 11 9 7 13 13 H 1.08009 * 119.99547 * 135.82672 * 12 11 9 14 14 C 1.38948 * 120.00490 * 315.82385 * 12 11 9 15 15 N 1.31405 * 120.00302 * 162.12845 * 14 12 11 16 16 Si 1.86796 * 119.99633 * 342.13341 * 14 12 11 17 17 H 1.48500 * 109.47401 * 95.24841 * 16 14 12 18 18 H 1.48506 * 109.47119 * 215.24628 * 16 14 12 19 19 H 1.48500 * 109.47495 * 335.24508 * 16 14 12 20 20 C 1.46496 * 120.00422 * 0.02562 * 11 9 7 21 21 C 1.50703 * 109.47043 * 263.99448 * 20 11 9 22 22 O 1.20832 * 119.99810 * 354.20364 * 21 20 11 23 23 O 1.34224 * 120.00017 * 173.92598 * 21 20 11 24 24 C 1.54628 * 101.80157 * 334.63236 * 7 6 5 25 25 C 1.34423 * 124.35290 * 89.97012 * 5 4 2 26 26 O 1.21279 * 124.94051 * 359.55536 * 25 5 4 27 27 H 1.09001 * 109.47442 * 299.99884 * 1 2 3 28 28 H 1.09001 * 109.47454 * 60.00278 * 1 2 3 29 29 H 1.09005 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46955 * 239.99433 * 2 1 3 31 31 H 1.08998 * 109.46814 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46748 * 299.99595 * 3 2 1 33 33 H 1.09001 * 109.46902 * 59.99786 * 3 2 1 34 34 H 1.08995 * 109.47213 * 305.00118 * 4 2 1 35 35 H 1.09004 * 109.46956 * 184.99869 * 4 2 1 36 36 H 1.09005 * 110.23639 * 78.02252 * 6 5 4 37 37 H 1.08997 * 110.28478 * 316.00343 * 6 5 4 38 38 H 0.96994 * 120.00342 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.47339 * 143.99596 * 20 11 9 40 40 H 1.09003 * 109.47083 * 23.98948 * 20 11 9 41 41 H 0.96702 * 117.00419 * 180.27325 * 23 21 20 42 42 H 1.09001 * 110.48969 * 143.45586 * 24 7 6 43 43 H 1.09003 * 110.48417 * 265.96999 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6524 -2.1328 1.1907 6 6 0.3980 -2.6703 1.7321 7 6 0.6163 -4.1958 1.8391 8 1 0.9833 -4.4690 2.8285 9 6 -0.6486 -4.9461 1.5101 10 8 -1.6689 -4.3372 1.2667 11 7 -0.6460 -6.2936 1.4864 12 6 -1.7967 -6.9761 1.1866 13 1 -1.7653 -7.8152 0.5072 14 6 -3.0030 -6.5885 1.7567 15 7 -4.1379 -6.9868 1.2275 16 14 -3.0114 -5.5009 3.2754 17 1 -3.1611 -4.0811 2.8667 18 1 -4.1458 -5.8855 4.1534 19 1 -1.7343 -5.6715 4.0136 20 6 0.5863 -7.0291 1.7808 21 6 1.2793 -7.3850 0.4908 22 8 0.7441 -7.1513 -0.5670 23 8 2.4936 -7.9565 0.5168 24 6 1.6987 -4.4367 0.7614 25 6 2.3998 -3.1021 0.6350 26 8 3.4789 -2.9315 0.1085 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6053 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2953 36 1 -0.4283 -2.4541 1.0548 37 1 0.1997 -2.2477 2.7171 38 1 -4.9801 -6.7159 1.6253 39 1 0.3437 -7.9410 2.3264 40 1 1.2446 -6.4070 2.3873 41 1 2.9000 -8.1628 -0.3361 42 1 2.3985 -5.2057 1.0887 43 1 1.2383 -4.7191 -0.1853 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736433009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:45 Heat of formation + Delta-G solvation = -143.010896 kcal Electronic energy + Delta-G solvation = -27929.021034 eV Core-core repulsion = 23975.099501 eV Total energy + Delta-G solvation = -3953.921533 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.87511 -39.83527 -38.68244 -36.71380 -35.83976 -35.48115 -34.63277 -32.47498 -31.53393 -28.14159 -27.74406 -27.15473 -26.62331 -24.78116 -22.43252 -21.52970 -20.75849 -19.45510 -19.00692 -17.97607 -17.56425 -16.78036 -16.57741 -16.21657 -15.69172 -15.54119 -15.20438 -14.94795 -14.59538 -14.19229 -14.04270 -13.78548 -13.41920 -13.16338 -12.94657 -12.76419 -12.70707 -12.50257 -12.36809 -12.23191 -11.86077 -11.77686 -11.44109 -11.30142 -11.27238 -11.12604 -11.02690 -10.86407 -10.77150 -10.42262 -10.16103 -10.07369 -9.74997 -8.81342 -8.72047 -8.59203 -7.90160 -6.29498 -4.11290 2.59628 2.66472 2.96522 3.01038 3.28674 3.30814 3.51603 3.73825 4.06837 4.36230 4.44986 4.54943 4.74321 4.78836 4.90869 4.95505 5.04182 5.12310 5.29234 5.30966 5.43493 5.45619 5.52166 5.56356 5.57676 5.66760 5.74555 5.75628 5.76508 5.81505 5.91460 5.99389 6.07098 6.18241 6.36876 6.58536 6.80742 7.13332 7.69579 7.76261 8.22946 8.27981 8.57716 8.69243 9.26553 9.52649 10.76244 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.013340 B = 0.005691 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.450767 B = 4919.241602 C = 6409.328932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.143 4.143 4 C 0.132 3.868 5 N -0.616 5.616 6 C 0.115 3.885 7 C -0.127 4.127 8 H 0.107 0.893 9 C 0.466 3.534 10 O -0.525 6.525 11 N -0.442 5.442 12 C -0.347 4.347 13 H 0.097 0.903 14 C 0.093 3.907 15 N -0.859 5.859 16 Si 0.907 3.093 17 H -0.255 1.255 18 H -0.304 1.304 19 H -0.279 1.279 20 C 0.110 3.890 21 C 0.450 3.550 22 O -0.488 6.488 23 O -0.527 6.527 24 C -0.150 4.150 25 C 0.524 3.476 26 O -0.537 6.537 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.274 0.726 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.403 0.597 42 H 0.101 0.899 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.691 8.604 4.061 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.135 4.135 3 C -0.201 4.201 4 C 0.010 3.990 5 N -0.349 5.349 6 C -0.007 4.007 7 C -0.149 4.149 8 H 0.125 0.875 9 C 0.255 3.745 10 O -0.406 6.406 11 N -0.164 5.164 12 C -0.473 4.473 13 H 0.114 0.886 14 C -0.116 4.116 15 N -0.493 5.493 16 Si 0.736 3.264 17 H -0.180 1.180 18 H -0.233 1.233 19 H -0.204 1.204 20 C -0.017 4.017 21 C 0.289 3.711 22 O -0.373 6.373 23 O -0.339 6.339 24 C -0.191 4.191 25 C 0.312 3.688 26 O -0.415 6.415 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.139 0.861 40 H 0.120 0.880 41 H 0.261 0.739 42 H 0.119 0.881 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.183 9.224 3.726 15.729 hybrid contribution 0.133 0.161 0.113 0.237 sum 12.316 9.385 3.840 15.953 Atomic orbital electron populations 1.21960 0.94564 1.02799 1.01631 1.21555 0.96730 0.96258 0.98995 1.21761 1.00942 0.95432 1.01950 1.21469 1.00502 0.79047 0.97963 1.48327 1.20582 1.07560 1.58477 1.22145 0.86554 0.91445 1.00577 1.22291 0.96076 0.96113 1.00403 0.87481 1.19874 0.89034 0.83172 0.82467 1.90566 1.33171 1.66408 1.50433 1.43254 1.07810 1.03190 1.62136 1.18819 0.82904 1.16879 1.28684 0.88583 1.25290 0.94500 0.94886 0.96969 1.69730 0.97839 1.43694 1.38069 0.86421 0.76814 0.82746 0.80372 1.18004 1.23271 1.20424 1.21189 0.88714 1.00979 0.90787 1.24598 0.78775 0.74084 0.93614 1.90771 1.64684 1.49010 1.32858 1.84546 1.33674 1.74648 1.41024 1.22545 0.97892 0.96678 1.01952 1.20765 0.84235 0.86898 0.76864 1.90688 1.20829 1.85203 1.44765 0.92687 0.92739 0.91674 0.90821 0.92608 0.92408 0.92576 0.90329 0.90112 0.88375 0.90075 0.91589 0.86102 0.88021 0.73865 0.88071 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.87 37.16 0.33 -1.44 16 2 C -0.12 -1.30 3.13 -90.62 -0.28 -1.58 16 3 C -0.14 -1.26 9.19 37.16 0.34 -0.92 16 4 C 0.13 1.51 5.35 -4.04 -0.02 1.48 16 5 N -0.62 -8.55 2.71 -172.36 -0.47 -9.02 16 6 C 0.12 1.69 6.03 -3.09 -0.02 1.67 16 7 C -0.13 -2.00 2.53 -90.14 -0.23 -2.23 16 8 H 0.11 1.38 7.43 -51.93 -0.39 1.00 16 9 C 0.47 9.97 5.17 -10.98 -0.06 9.92 16 10 O -0.53 -13.24 11.19 5.55 0.06 -13.18 16 11 N -0.44 -9.72 1.72 -116.09 -0.20 -9.92 16 12 C -0.35 -9.33 9.41 -14.93 -0.14 -9.47 16 13 H 0.10 2.82 8.06 -52.48 -0.42 2.39 16 14 C 0.09 2.61 4.88 -17.47 -0.09 2.52 16 15 N -0.86 -25.36 13.96 55.50 0.77 -24.59 16 16 Si 0.91 22.17 24.78 -169.99 -4.21 17.96 16 17 H -0.25 -6.46 6.39 56.52 0.36 -6.10 16 18 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 C 0.11 1.80 5.47 -5.19 -0.03 1.77 16 21 C 0.45 7.40 6.10 36.01 0.22 7.62 16 22 O -0.49 -10.17 16.23 -18.75 -0.30 -10.47 16 23 O -0.53 -6.48 13.42 -39.24 -0.53 -7.01 16 24 C -0.15 -2.33 4.47 -26.74 -0.12 -2.45 16 25 C 0.52 8.41 8.02 -10.86 -0.09 8.33 16 26 O -0.54 -10.04 17.60 5.56 0.10 -9.95 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.90 5.44 -51.93 -0.28 0.62 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.93 7.93 -51.93 -0.41 0.52 16 36 H 0.10 1.64 5.05 -51.93 -0.26 1.38 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.12 1.80 8.09 -51.93 -0.42 1.38 16 40 H 0.10 1.29 5.56 -51.93 -0.29 1.00 16 41 H 0.40 3.45 9.10 45.56 0.41 3.86 16 42 H 0.10 1.37 6.41 -51.93 -0.33 1.04 16 43 H 0.12 2.07 7.01 -51.93 -0.36 1.71 16 LS Contribution 344.38 15.07 5.19 5.19 Total: -1.00 -35.57 344.38 -5.08 -40.64 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.31 Total: 5.12 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: -0.18 Total: 15.23 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.11 Total: -43.53 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.67 Total: -40.61 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.21 Total: 17.96 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.57 -5.08 -40.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736433009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.367 kcal (2) G-P(sol) polarization free energy of solvation -35.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds