Wall clock time and date at job start Fri Apr 10 2020 18:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47051 * 2 1 4 4 C 1.53007 * 109.46893 * 119.99567 * 2 1 3 5 5 N 1.46500 * 109.46908 * 65.00372 * 4 2 1 6 6 C 1.46823 * 124.33162 * 269.93157 * 5 4 2 7 7 C 1.54477 * 105.44343 * 196.99940 * 6 5 4 8 8 H 1.09003 * 110.97128 * 92.77057 * 7 6 5 9 9 C 1.50703 * 110.97124 * 216.49113 * 7 6 5 10 10 O 1.21290 * 119.99898 * 356.91726 * 9 7 6 11 11 N 1.34777 * 119.99840 * 176.90953 * 9 7 6 12 12 C 1.37104 * 119.99539 * 180.02562 * 11 9 7 13 13 H 1.08009 * 119.99547 * 135.82672 * 12 11 9 14 14 C 1.38948 * 120.00490 * 315.82385 * 12 11 9 15 15 N 1.31405 * 120.00302 * 162.12845 * 14 12 11 16 16 Si 1.86796 * 119.99633 * 342.13341 * 14 12 11 17 17 H 1.48500 * 109.47401 * 95.24841 * 16 14 12 18 18 H 1.48506 * 109.47119 * 215.24628 * 16 14 12 19 19 H 1.48500 * 109.47495 * 335.24508 * 16 14 12 20 20 C 1.46496 * 120.00422 * 0.02562 * 11 9 7 21 21 C 1.50703 * 109.47043 * 263.99448 * 20 11 9 22 22 O 1.20832 * 119.99810 * 354.20364 * 21 20 11 23 23 O 1.34224 * 120.00017 * 173.92598 * 21 20 11 24 24 C 1.54628 * 101.80157 * 334.63236 * 7 6 5 25 25 C 1.34423 * 124.35290 * 89.97012 * 5 4 2 26 26 O 1.21279 * 124.94051 * 359.55536 * 25 5 4 27 27 H 1.09001 * 109.47442 * 299.99884 * 1 2 3 28 28 H 1.09001 * 109.47454 * 60.00278 * 1 2 3 29 29 H 1.09005 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46955 * 239.99433 * 2 1 3 31 31 H 1.08998 * 109.46814 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46748 * 299.99595 * 3 2 1 33 33 H 1.09001 * 109.46902 * 59.99786 * 3 2 1 34 34 H 1.08995 * 109.47213 * 305.00118 * 4 2 1 35 35 H 1.09004 * 109.46956 * 184.99869 * 4 2 1 36 36 H 1.09005 * 110.23639 * 78.02252 * 6 5 4 37 37 H 1.08997 * 110.28478 * 316.00343 * 6 5 4 38 38 H 0.96994 * 120.00342 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.47339 * 143.99596 * 20 11 9 40 40 H 1.09003 * 109.47083 * 23.98948 * 20 11 9 41 41 H 0.96702 * 117.00419 * 180.27325 * 23 21 20 42 42 H 1.09001 * 110.48969 * 143.45586 * 24 7 6 43 43 H 1.09003 * 110.48417 * 265.96999 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6524 -2.1328 1.1907 6 6 0.3980 -2.6703 1.7321 7 6 0.6163 -4.1958 1.8391 8 1 0.9833 -4.4690 2.8285 9 6 -0.6486 -4.9461 1.5101 10 8 -1.6689 -4.3372 1.2667 11 7 -0.6460 -6.2936 1.4864 12 6 -1.7967 -6.9761 1.1866 13 1 -1.7653 -7.8152 0.5072 14 6 -3.0030 -6.5885 1.7567 15 7 -4.1379 -6.9868 1.2275 16 14 -3.0114 -5.5009 3.2754 17 1 -3.1611 -4.0811 2.8667 18 1 -4.1458 -5.8855 4.1534 19 1 -1.7343 -5.6715 4.0136 20 6 0.5863 -7.0291 1.7808 21 6 1.2793 -7.3850 0.4908 22 8 0.7441 -7.1513 -0.5670 23 8 2.4936 -7.9565 0.5168 24 6 1.6987 -4.4367 0.7614 25 6 2.3998 -3.1021 0.6350 26 8 3.4789 -2.9315 0.1085 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6053 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2953 36 1 -0.4283 -2.4541 1.0548 37 1 0.1997 -2.2477 2.7171 38 1 -4.9801 -6.7159 1.6253 39 1 0.3437 -7.9410 2.3264 40 1 1.2446 -6.4070 2.3873 41 1 2.9000 -8.1628 -0.3361 42 1 2.3985 -5.2057 1.0887 43 1 1.2383 -4.7191 -0.1853 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736433009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:44 Heat of formation + Delta-G solvation = -169.621911 kcal Electronic energy + Delta-G solvation = -27930.174974 eV Core-core repulsion = 23975.099501 eV Total energy + Delta-G solvation = -3955.075473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.22209 -41.13002 -40.22588 -37.85345 -37.12258 -36.65930 -36.31216 -34.32295 -32.85530 -29.65517 -28.93331 -28.19946 -27.66668 -26.37739 -23.89405 -22.84343 -21.76338 -20.94211 -20.28592 -19.46846 -18.96635 -18.12262 -17.86614 -17.56930 -17.17301 -16.94669 -16.51333 -16.40855 -15.70426 -15.62779 -15.39078 -15.25307 -14.84612 -14.53639 -14.27525 -14.16036 -13.94309 -13.83314 -13.68535 -13.12527 -13.10230 -13.01144 -12.76524 -12.58221 -12.52146 -12.38111 -12.32954 -12.25656 -11.94663 -11.77573 -11.67614 -11.61871 -11.07774 -10.76011 -10.49615 -9.78740 -9.72415 -8.38816 -6.21650 1.27004 1.30403 1.39253 1.41028 1.55807 1.67429 1.89108 2.23079 2.46326 2.59652 3.05386 3.15690 3.31004 3.69025 3.77339 3.87837 3.91483 3.99926 4.10197 4.20882 4.39839 4.43819 4.48610 4.50737 4.56528 4.60178 4.68162 4.73538 4.78472 4.86953 4.96792 5.02964 5.21203 5.29453 5.38780 5.55437 5.67692 5.70743 5.83980 5.97121 6.65236 6.80733 7.02002 7.09539 7.26776 7.71201 8.71101 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.013340 B = 0.005691 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.450767 B = 4919.241602 C = 6409.328932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.127 3.873 5 N -0.606 5.606 6 C 0.117 3.883 7 C -0.117 4.117 8 H 0.156 0.844 9 C 0.464 3.536 10 O -0.569 6.569 11 N -0.457 5.457 12 C -0.342 4.342 13 H 0.053 0.947 14 C 0.039 3.961 15 N -0.915 5.915 16 Si 0.963 3.037 17 H -0.272 1.272 18 H -0.306 1.306 19 H -0.237 1.237 20 C 0.102 3.898 21 C 0.461 3.539 22 O -0.543 6.543 23 O -0.506 6.506 24 C -0.142 4.142 25 C 0.523 3.477 26 O -0.568 6.568 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.273 0.727 39 H 0.139 0.861 40 H 0.153 0.847 41 H 0.423 0.577 42 H 0.125 0.875 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.516 10.190 6.999 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.195 4.195 4 C 0.006 3.994 5 N -0.338 5.338 6 C -0.006 4.006 7 C -0.139 4.139 8 H 0.174 0.826 9 C 0.255 3.745 10 O -0.452 6.452 11 N -0.179 5.179 12 C -0.469 4.469 13 H 0.070 0.930 14 C -0.165 4.165 15 N -0.552 5.552 16 Si 0.790 3.210 17 H -0.198 1.198 18 H -0.235 1.235 19 H -0.160 1.160 20 C -0.023 4.023 21 C 0.302 3.698 22 O -0.432 6.432 23 O -0.319 6.319 24 C -0.183 4.183 25 C 0.311 3.689 26 O -0.448 6.448 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.133 0.867 38 H 0.083 0.917 39 H 0.157 0.843 40 H 0.170 0.830 41 H 0.285 0.715 42 H 0.144 0.856 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.079 10.789 6.687 19.710 hybrid contribution -0.639 -0.351 -0.967 1.211 sum 14.440 10.437 5.720 18.713 Atomic orbital electron populations 1.21934 0.94926 1.01274 1.02568 1.21513 0.96293 0.97678 0.97830 1.21714 1.01202 0.93616 1.02943 1.21735 1.00909 0.77615 0.99136 1.48371 1.19702 1.08350 1.57337 1.22143 0.85891 0.90891 1.01697 1.22311 0.92872 0.96087 1.02619 0.82633 1.20813 0.90309 0.83032 0.80379 1.90545 1.35488 1.67378 1.51797 1.43326 1.08263 1.03778 1.62505 1.18546 0.85106 1.15737 1.27531 0.92954 1.26113 0.94113 0.96385 0.99854 1.69858 0.98601 1.46547 1.40197 0.85500 0.78575 0.79637 0.77335 1.19801 1.23508 1.15978 1.21532 0.87031 1.02317 0.91382 1.24532 0.79324 0.73124 0.92801 1.90780 1.66260 1.51489 1.34700 1.84476 1.31592 1.73362 1.42437 1.22447 0.97932 0.97342 1.00550 1.20790 0.83972 0.87450 0.76699 1.90675 1.22251 1.85645 1.46193 0.90927 0.92687 0.94352 0.93770 0.92154 0.92263 0.90771 0.87243 0.89897 0.90910 0.86704 0.91729 0.84293 0.83014 0.71538 0.85647 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.87 71.98 0.64 -2.66 16 2 C -0.11 -2.36 3.13 -10.79 -0.03 -2.39 16 3 C -0.14 -2.07 9.19 71.98 0.66 -1.41 16 4 C 0.13 2.50 5.35 86.38 0.46 2.97 16 5 N -0.61 -15.18 2.71 -817.83 -2.21 -17.39 16 6 C 0.12 3.05 6.03 86.82 0.52 3.57 16 7 C -0.12 -3.28 2.53 -10.48 -0.03 -3.31 16 8 H 0.16 2.95 7.43 -2.39 -0.02 2.93 16 9 C 0.46 19.14 5.17 87.66 0.45 19.59 16 10 O -0.57 -28.70 11.19 -3.06 -0.03 -28.73 16 11 N -0.46 -19.57 1.72 -639.59 -1.10 -20.67 16 12 C -0.34 -18.86 9.41 84.04 0.79 -18.07 16 13 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 14 C 0.04 2.25 4.88 84.93 0.41 2.66 16 15 N -0.92 -56.59 13.96 21.66 0.30 -56.29 16 16 Si 0.96 45.46 24.78 68.60 1.70 47.16 16 17 H -0.27 -13.50 6.39 99.48 0.64 -12.86 16 18 H -0.31 -14.32 7.11 99.48 0.71 -13.62 16 19 H -0.24 -9.39 7.11 99.48 0.71 -8.69 16 20 C 0.10 3.02 5.47 85.63 0.47 3.49 16 21 C 0.46 14.31 6.10 71.24 0.43 14.75 16 22 O -0.54 -22.85 16.23 21.95 0.36 -22.50 16 23 O -0.51 -10.78 13.42 -51.35 -0.69 -11.47 16 24 C -0.14 -4.05 4.47 30.59 0.14 -3.92 16 25 C 0.52 15.66 8.02 87.90 0.71 16.36 16 26 O -0.57 -20.37 17.60 -3.03 -0.05 -20.42 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.04 1.05 5.44 -2.38 -0.01 1.04 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.66 7.93 -2.38 -0.02 1.64 16 36 H 0.07 2.36 5.05 -2.38 -0.01 2.35 16 37 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 39 H 0.14 3.67 8.09 -2.39 -0.02 3.65 16 40 H 0.15 2.95 5.56 -2.39 -0.01 2.94 16 41 H 0.42 6.01 9.10 -74.06 -0.67 5.34 16 42 H 0.13 2.89 6.41 -2.39 -0.02 2.88 16 43 H 0.08 3.02 7.01 -2.39 -0.02 3.00 16 Total: -1.00 -83.95 344.38 4.20 -79.76 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.30 Total: 18.92 kcal Atomic # 6 Polarization: 26.01 SS G_CDS: 5.63 Total: 31.64 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -3.01 Total: -94.35 kcal Atomic # 8 Polarization: -82.70 SS G_CDS: -0.42 Total: -83.12 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.70 Total: 47.16 kcal Total: -83.95 4.20 -79.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736433009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.865 kcal (2) G-P(sol) polarization free energy of solvation -83.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds