Wall clock time and date at job start Fri Apr 10 2020 18:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.50700 * 109.46738 * 175.00110 * 3 2 1 6 6 O 1.20823 * 120.00102 * 120.00011 * 5 3 2 7 7 O 1.34224 * 120.00110 * 299.99572 * 5 3 2 8 8 C 1.45199 * 117.00103 * 180.02562 * 7 5 3 9 9 C 1.50701 * 109.47031 * 180.02562 * 8 7 5 10 10 O 1.21284 * 120.00263 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00228 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00509 * 180.02562 * 11 9 8 13 13 C 1.50694 * 109.47142 * 180.02562 * 12 11 9 14 14 H 1.07998 * 120.00567 * 359.97438 * 13 12 11 15 15 C 1.37886 * 119.99947 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99652 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99973 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46690 * 90.00189 * 17 15 13 19 19 H 1.48496 * 109.46661 * 209.99740 * 17 15 13 20 20 H 1.48492 * 109.47205 * 329.99961 * 17 15 13 21 21 N 1.46506 * 109.46901 * 294.99627 * 3 2 1 22 22 C 1.46765 * 124.34491 * 120.00426 * 21 3 2 23 23 C 1.54480 * 105.46742 * 197.01544 * 22 21 3 24 24 C 1.54618 * 101.76958 * 334.58473 * 23 22 21 25 25 C 1.34414 * 124.34882 * 299.70494 * 21 3 2 26 26 O 1.21277 * 124.94855 * 359.56305 * 25 21 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 31 31 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 32 32 H 1.09002 * 109.47177 * 299.99498 * 8 7 5 33 33 H 1.08997 * 109.47655 * 60.00189 * 8 7 5 34 34 H 0.97007 * 119.99443 * 0.02562 * 11 9 8 35 35 H 1.09002 * 109.46421 * 299.99947 * 12 11 9 36 36 H 1.08997 * 109.46775 * 59.99636 * 12 11 9 37 37 H 0.97000 * 119.99826 * 180.02562 * 16 15 13 38 38 H 1.09000 * 110.24660 * 316.01388 * 22 21 3 39 39 H 1.08998 * 110.24581 * 78.01816 * 22 21 3 40 40 H 1.09005 * 110.96633 * 92.70737 * 23 22 21 41 41 H 1.09004 * 110.96824 * 216.46274 * 23 22 21 42 42 H 1.08997 * 110.48950 * 143.47520 * 24 23 22 43 43 H 1.09006 * 110.48642 * 265.98850 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5419 1.4442 0.1238 6 8 4.2191 1.9415 -0.7445 7 8 4.1273 0.8933 1.1987 8 6 5.5778 0.9316 1.2514 9 6 6.0519 0.2707 2.5201 10 8 5.2466 -0.1870 3.3030 11 7 7.3709 0.1883 2.7848 12 6 7.8319 -0.4547 4.0178 13 6 9.3373 -0.4149 4.0726 14 1 9.8951 0.0431 3.2691 15 6 10.0028 -0.9632 5.1485 16 7 9.3236 -1.5204 6.1272 17 14 11.8690 -0.9145 5.2161 18 1 12.3073 0.3305 5.8966 19 1 12.3678 -2.0926 5.9699 20 1 12.4152 -0.9426 3.8355 21 7 1.6524 2.0974 -1.2519 22 6 0.8076 3.2948 -1.3330 23 6 0.3195 3.3562 -2.7973 24 6 1.4367 2.5825 -3.5349 25 6 2.0296 1.6823 -2.4734 26 8 2.7399 0.7240 -2.6929 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.9868 0.4013 0.3913 33 1 5.9150 1.9679 1.2334 34 1 8.0150 0.5547 2.1588 35 1 7.4232 0.0750 4.8784 36 1 7.4945 -1.4910 4.0352 37 1 9.7918 -1.9058 6.8844 38 1 -0.0417 3.2038 -0.6558 39 1 1.3897 4.1842 -1.0918 40 1 -0.6418 2.8547 -2.9094 41 1 0.2629 4.3872 -3.1467 42 1 1.0178 1.9918 -4.3495 43 1 2.1918 3.2715 -3.9136 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745693298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:18 Heat of formation + Delta-G solvation = -157.097977 kcal Electronic energy + Delta-G solvation = -25953.438340 eV Core-core repulsion = 21998.905945 eV Total energy + Delta-G solvation = -3954.532395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29442 -40.04892 -38.65405 -36.70491 -36.31310 -35.26515 -34.24058 -32.40513 -31.40669 -29.49431 -27.98307 -27.70461 -26.41383 -22.87196 -22.56091 -22.29876 -21.67135 -19.93763 -19.32979 -17.99552 -17.64941 -17.00059 -16.79228 -16.53285 -15.99343 -15.60507 -15.40260 -15.04705 -14.67657 -14.52597 -14.26734 -14.00895 -13.64392 -13.42163 -13.33127 -13.11645 -12.98417 -12.78442 -12.53880 -12.12007 -11.98956 -11.95259 -11.77101 -11.57950 -11.44631 -11.24263 -11.01341 -10.91699 -10.66781 -10.57360 -10.34199 -9.90037 -9.43892 -9.21708 -9.07761 -8.77944 -7.98397 -6.19422 -4.26686 2.01244 2.12610 2.46570 2.81925 3.18513 3.23470 3.29698 3.32335 3.89468 4.00791 4.06578 4.32687 4.37753 4.47393 4.58042 4.62715 4.71078 4.97514 5.04633 5.09097 5.12674 5.16727 5.22626 5.26351 5.26833 5.35671 5.37199 5.42993 5.53966 5.70850 5.77891 5.98709 6.12595 6.33882 6.78327 7.22759 7.31296 7.46065 7.58905 7.66943 7.92167 7.96506 8.50418 8.71384 8.96675 9.39608 10.90724 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.031490 B = 0.002337 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.970802 B =11977.097695 C =12427.630780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.175 3.825 4 H 0.128 0.872 5 C 0.448 3.552 6 O -0.492 6.492 7 O -0.327 6.327 8 C 0.050 3.950 9 C 0.501 3.499 10 O -0.534 6.534 11 N -0.707 5.707 12 C 0.251 3.749 13 C -0.545 4.545 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.906 3.094 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 N -0.611 5.611 22 C 0.103 3.897 23 C -0.129 4.129 24 C -0.154 4.154 25 C 0.525 3.475 26 O -0.514 6.514 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.393 0.607 35 H 0.029 0.971 36 H 0.030 0.970 37 H 0.266 0.734 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.032 11.351 -17.244 29.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.070 3.930 4 H 0.146 0.854 5 C 0.288 3.712 6 O -0.378 6.378 7 O -0.241 6.241 8 C -0.028 4.028 9 C 0.284 3.716 10 O -0.412 6.412 11 N -0.357 5.357 12 C 0.131 3.869 13 C -0.583 4.583 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.733 3.267 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 N -0.347 5.347 22 C -0.020 4.020 23 C -0.167 4.167 24 C -0.194 4.194 25 C 0.313 3.687 26 O -0.388 6.388 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.226 0.774 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.932 10.495 -16.776 28.805 hybrid contribution 1.617 0.382 -0.191 1.672 sum -19.315 10.877 -16.967 27.915 Atomic orbital electron populations 1.21696 0.94254 1.02393 1.01760 1.21931 0.97268 0.93107 1.05328 1.20415 0.87560 0.97164 0.87841 0.85401 1.23986 0.92297 0.75226 0.79657 1.90673 1.65209 1.42022 1.39924 1.86527 1.22550 1.72266 1.42753 1.22863 0.77808 1.02946 0.99153 1.19871 0.83955 0.81125 0.86689 1.90702 1.53840 1.47813 1.48816 1.46370 1.04843 1.58847 1.25614 1.19175 0.94326 0.93236 0.80146 1.21210 0.90630 1.39884 1.06605 0.91775 1.24958 0.99196 0.94690 0.95165 1.69974 1.35950 1.37174 1.09098 0.86384 0.84352 0.77736 0.78271 1.20431 1.20965 1.19715 1.48078 1.51752 1.29750 1.05087 1.22156 0.94256 0.87285 0.98254 1.22576 0.98527 1.02024 0.93593 1.22318 0.99501 0.99541 0.98064 1.20828 0.79364 0.84508 0.84035 1.90736 1.36268 1.28248 1.83561 0.91924 0.92318 0.92756 0.89788 0.88662 0.88524 0.88648 0.77424 0.95254 0.95236 0.92376 0.89882 0.90875 0.89797 0.88996 0.88014 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.80 37.16 0.36 -0.71 16 2 C -0.14 -1.44 5.32 -26.73 -0.14 -1.59 16 3 C 0.18 1.86 2.78 -69.08 -0.19 1.67 16 4 H 0.13 0.99 8.07 -51.93 -0.42 0.57 16 5 C 0.45 6.60 6.95 36.01 0.25 6.85 16 6 O -0.49 -8.37 14.59 -24.34 -0.36 -8.72 16 7 O -0.33 -5.36 9.56 -45.89 -0.44 -5.80 16 8 C 0.05 0.81 5.94 36.01 0.21 1.02 16 9 C 0.50 10.28 7.91 -10.98 -0.09 10.19 16 10 O -0.53 -13.14 16.50 -14.11 -0.23 -13.38 16 11 N -0.71 -14.94 5.55 -61.48 -0.34 -15.28 16 12 C 0.25 6.64 5.43 -5.20 -0.03 6.62 16 13 C -0.55 -14.75 9.28 -34.44 -0.32 -15.07 16 14 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.88 -25.98 13.29 55.43 0.74 -25.24 16 17 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 N -0.61 -5.75 2.08 -166.16 -0.35 -6.09 16 22 C 0.10 0.53 7.30 -3.12 -0.02 0.50 16 23 C -0.13 -0.47 7.18 -25.10 -0.18 -0.65 16 24 C -0.15 -1.04 6.86 -26.74 -0.18 -1.22 16 25 C 0.52 6.08 6.69 -10.86 -0.07 6.01 16 26 O -0.51 -8.39 15.33 -10.07 -0.15 -8.54 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.38 7.75 -51.93 -0.40 -0.02 16 30 H 0.08 1.08 6.67 -51.93 -0.35 0.73 16 31 H 0.09 1.06 7.99 -51.93 -0.42 0.65 16 32 H 0.10 1.45 8.13 -51.93 -0.42 1.03 16 33 H 0.10 1.34 8.13 -51.93 -0.42 0.92 16 34 H 0.39 7.05 8.32 -40.82 -0.34 6.71 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -37.13 367.05 -7.65 -44.78 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.53 Total: 1.61 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: -0.50 Total: 15.30 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.05 Total: -46.61 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -1.18 Total: -36.44 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.13 -7.65 -44.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745693298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.323 kcal (2) G-P(sol) polarization free energy of solvation -37.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds