Wall clock time and date at job start Fri Apr 10 2020 18:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.50700 * 109.46738 * 175.00110 * 3 2 1 6 6 O 1.20823 * 120.00102 * 120.00011 * 5 3 2 7 7 O 1.34224 * 120.00110 * 299.99572 * 5 3 2 8 8 C 1.45199 * 117.00103 * 180.02562 * 7 5 3 9 9 C 1.50701 * 109.47031 * 180.02562 * 8 7 5 10 10 O 1.21284 * 120.00263 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00228 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00509 * 180.02562 * 11 9 8 13 13 C 1.50694 * 109.47142 * 180.02562 * 12 11 9 14 14 H 1.07998 * 120.00567 * 359.97438 * 13 12 11 15 15 C 1.37886 * 119.99947 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99652 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99973 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46690 * 90.00189 * 17 15 13 19 19 H 1.48496 * 109.46661 * 209.99740 * 17 15 13 20 20 H 1.48492 * 109.47205 * 329.99961 * 17 15 13 21 21 N 1.46506 * 109.46901 * 294.99627 * 3 2 1 22 22 C 1.46765 * 124.34491 * 120.00426 * 21 3 2 23 23 C 1.54480 * 105.46742 * 197.01544 * 22 21 3 24 24 C 1.54618 * 101.76958 * 334.58473 * 23 22 21 25 25 C 1.34414 * 124.34882 * 299.70494 * 21 3 2 26 26 O 1.21277 * 124.94855 * 359.56305 * 25 21 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 31 31 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 32 32 H 1.09002 * 109.47177 * 299.99498 * 8 7 5 33 33 H 1.08997 * 109.47655 * 60.00189 * 8 7 5 34 34 H 0.97007 * 119.99443 * 0.02562 * 11 9 8 35 35 H 1.09002 * 109.46421 * 299.99947 * 12 11 9 36 36 H 1.08997 * 109.46775 * 59.99636 * 12 11 9 37 37 H 0.97000 * 119.99826 * 180.02562 * 16 15 13 38 38 H 1.09000 * 110.24660 * 316.01388 * 22 21 3 39 39 H 1.08998 * 110.24581 * 78.01816 * 22 21 3 40 40 H 1.09005 * 110.96633 * 92.70737 * 23 22 21 41 41 H 1.09004 * 110.96824 * 216.46274 * 23 22 21 42 42 H 1.08997 * 110.48950 * 143.47520 * 24 23 22 43 43 H 1.09006 * 110.48642 * 265.98850 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5419 1.4442 0.1238 6 8 4.2191 1.9415 -0.7445 7 8 4.1273 0.8933 1.1987 8 6 5.5778 0.9316 1.2514 9 6 6.0519 0.2707 2.5201 10 8 5.2466 -0.1870 3.3030 11 7 7.3709 0.1883 2.7848 12 6 7.8319 -0.4547 4.0178 13 6 9.3373 -0.4149 4.0726 14 1 9.8951 0.0431 3.2691 15 6 10.0028 -0.9632 5.1485 16 7 9.3236 -1.5204 6.1272 17 14 11.8690 -0.9145 5.2161 18 1 12.3073 0.3305 5.8966 19 1 12.3678 -2.0926 5.9699 20 1 12.4152 -0.9426 3.8355 21 7 1.6524 2.0974 -1.2519 22 6 0.8076 3.2948 -1.3330 23 6 0.3195 3.3562 -2.7973 24 6 1.4367 2.5825 -3.5349 25 6 2.0296 1.6823 -2.4734 26 8 2.7399 0.7240 -2.6929 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.9868 0.4013 0.3913 33 1 5.9150 1.9679 1.2334 34 1 8.0150 0.5547 2.1588 35 1 7.4232 0.0750 4.8784 36 1 7.4945 -1.4910 4.0352 37 1 9.7918 -1.9058 6.8844 38 1 -0.0417 3.2038 -0.6558 39 1 1.3897 4.1842 -1.0918 40 1 -0.6418 2.8547 -2.9094 41 1 0.2629 4.3872 -3.1467 42 1 1.0178 1.9918 -4.3495 43 1 2.1918 3.2715 -3.9136 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745693298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:18 Heat of formation + Delta-G solvation = -182.487094 kcal Electronic energy + Delta-G solvation = -25954.539294 eV Core-core repulsion = 21998.905945 eV Total energy + Delta-G solvation = -3955.633349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.26585 -41.14515 -40.29865 -37.70809 -37.45733 -36.21761 -35.99829 -34.44411 -32.01945 -31.02648 -29.09671 -28.46048 -27.88034 -24.72058 -23.47151 -22.80242 -22.72690 -21.69738 -20.27220 -19.25466 -19.00468 -18.22929 -17.93734 -17.50517 -17.45564 -16.98741 -16.69931 -16.44686 -16.09539 -15.90722 -15.31149 -14.81592 -14.74098 -14.53105 -14.35859 -14.23052 -13.99426 -13.82781 -13.79637 -13.57515 -13.35809 -13.05035 -12.96177 -12.73379 -12.45308 -12.25309 -12.19763 -12.06671 -11.96925 -11.83248 -11.63928 -11.52275 -10.96904 -10.83786 -10.75487 -9.96982 -9.86131 -8.31546 -6.48191 0.91307 1.01895 1.42753 1.44649 1.49334 1.56110 1.65422 1.93019 2.32326 2.51961 3.03531 3.34946 3.50944 3.64408 3.68147 3.73087 3.86826 3.95055 3.96592 4.08473 4.19740 4.34036 4.40748 4.68344 4.69308 4.73920 4.88679 5.02365 5.05597 5.07071 5.13108 5.15303 5.19278 5.25893 5.31662 5.38287 5.44518 5.59697 5.79635 6.07829 6.46204 6.59896 6.73251 7.14749 7.16737 7.31039 8.80567 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.031490 B = 0.002337 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.970802 B =11977.097695 C =12427.630780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.134 4.134 3 C 0.174 3.826 4 H 0.164 0.836 5 C 0.445 3.555 6 O -0.518 6.518 7 O -0.342 6.342 8 C 0.061 3.939 9 C 0.502 3.498 10 O -0.579 6.579 11 N -0.699 5.699 12 C 0.267 3.733 13 C -0.558 4.558 14 H 0.084 0.916 15 C 0.005 3.995 16 N -0.929 5.929 17 Si 0.985 3.015 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.257 1.257 21 N -0.608 5.608 22 C 0.094 3.906 23 C -0.114 4.114 24 C -0.151 4.151 25 C 0.506 3.494 26 O -0.576 6.576 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.411 0.589 35 H -0.005 1.005 36 H -0.008 1.008 37 H 0.270 0.730 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.784 13.638 -18.530 31.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.172 4.172 3 C 0.069 3.931 4 H 0.181 0.819 5 C 0.287 3.713 6 O -0.405 6.405 7 O -0.257 6.257 8 C -0.016 4.016 9 C 0.288 3.712 10 O -0.459 6.459 11 N -0.350 5.350 12 C 0.145 3.855 13 C -0.596 4.596 14 H 0.102 0.898 15 C -0.195 4.195 16 N -0.567 5.567 17 Si 0.809 3.191 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.181 1.181 21 N -0.342 5.342 22 C -0.027 4.027 23 C -0.152 4.152 24 C -0.191 4.191 25 C 0.297 3.703 26 O -0.455 6.455 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.129 0.871 33 H 0.141 0.859 34 H 0.248 0.752 35 H 0.013 0.987 36 H 0.010 0.990 37 H 0.079 0.921 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.717 12.847 -18.100 31.052 hybrid contribution 1.778 -0.324 0.199 1.818 sum -19.939 12.523 -17.901 29.577 Atomic orbital electron populations 1.21655 0.91492 1.02934 1.03155 1.21859 0.99546 0.92703 1.03129 1.20645 0.84681 0.97944 0.89840 0.81865 1.24923 0.93869 0.73998 0.78496 1.90653 1.66103 1.43289 1.40495 1.86538 1.22355 1.72866 1.43912 1.22690 0.78463 1.04010 0.96440 1.20558 0.83095 0.80024 0.87541 1.90677 1.54891 1.49612 1.50739 1.46063 1.05865 1.58614 1.24497 1.18645 0.94604 0.91059 0.81225 1.21597 0.90755 1.39913 1.07333 0.89754 1.26055 1.04961 0.93926 0.94564 1.70129 1.38422 1.38189 1.09973 0.85144 0.77236 0.77836 0.78932 1.19483 1.20908 1.18124 1.48305 1.51388 1.30554 1.03979 1.22551 0.94567 0.85492 1.00089 1.22632 0.97705 1.03139 0.91698 1.22373 1.00545 0.99050 0.97135 1.21785 0.78622 0.84189 0.85751 1.90693 1.39094 1.31007 1.84674 0.91930 0.90235 0.91871 0.92892 0.90004 0.87094 0.85853 0.75235 0.98696 0.98960 0.92144 0.87014 0.90304 0.88184 0.86433 0.87235 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.80 71.98 0.71 -1.08 16 2 C -0.13 -2.80 5.32 30.59 0.16 -2.64 16 3 C 0.17 3.51 2.78 44.24 0.12 3.63 16 4 H 0.16 2.08 8.07 -2.39 -0.02 2.06 16 5 C 0.45 13.04 6.95 71.24 0.49 13.53 16 6 O -0.52 -17.59 14.59 27.32 0.40 -17.19 16 7 O -0.34 -11.25 9.56 -45.01 -0.43 -11.68 16 8 C 0.06 1.95 5.94 71.24 0.42 2.38 16 9 C 0.50 21.01 7.91 87.66 0.69 21.70 16 10 O -0.58 -29.59 16.50 15.76 0.26 -29.33 16 11 N -0.70 -29.97 5.55 -466.79 -2.59 -32.56 16 12 C 0.27 14.66 5.43 85.63 0.46 15.12 16 13 C -0.56 -30.36 9.28 25.60 0.24 -30.12 16 14 H 0.08 4.15 7.60 -2.91 -0.02 4.12 16 15 C 0.00 0.27 5.46 84.66 0.46 0.73 16 16 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 17 Si 0.99 42.41 29.54 68.60 2.03 44.44 16 18 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 21 N -0.61 -10.44 2.08 -798.20 -1.66 -12.10 16 22 C 0.09 0.62 7.30 86.83 0.63 1.26 16 23 C -0.11 -0.39 7.18 31.65 0.23 -0.16 16 24 C -0.15 -1.76 6.86 30.59 0.21 -1.55 16 25 C 0.51 11.55 6.69 87.90 0.59 12.14 16 26 O -0.58 -19.63 15.33 11.93 0.18 -19.45 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.73 7.75 -2.39 -0.02 0.71 16 30 H 0.05 1.44 6.67 -2.39 -0.02 1.43 16 31 H 0.08 1.89 7.99 -2.39 -0.02 1.87 16 32 H 0.11 3.27 8.13 -2.39 -0.02 3.25 16 33 H 0.12 3.29 8.13 -2.39 -0.02 3.27 16 34 H 0.41 14.48 8.32 -92.70 -0.77 13.71 16 35 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 37 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16 38 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.10 0.08 8.14 -2.38 -0.02 0.06 16 41 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 42 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -85.89 367.05 4.15 -81.75 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.25 Total: 16.73 kcal Atomic # 6 Polarization: 29.52 SS G_CDS: 5.43 Total: 34.94 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -3.97 Total: -100.21 kcal Atomic # 8 Polarization: -78.06 SS G_CDS: 0.41 Total: -77.65 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -85.89 4.15 -81.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745693298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.741 kcal (2) G-P(sol) polarization free energy of solvation -85.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds