Wall clock time and date at job start Fri Apr 10 2020 18:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47232 * 2 1 4 4 H 1.09009 * 109.47055 * 305.00197 * 3 2 1 5 5 C 1.50696 * 109.47495 * 185.00193 * 3 2 1 6 6 O 1.20833 * 119.99595 * 239.99944 * 5 3 2 7 7 O 1.34224 * 120.00302 * 59.99416 * 5 3 2 8 8 C 1.45206 * 117.00077 * 180.02562 * 7 5 3 9 9 C 1.50699 * 109.47021 * 180.02562 * 8 7 5 10 10 O 1.21282 * 120.00041 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00169 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47324 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99822 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00339 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99769 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00300 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46819 * 59.99744 * 17 15 13 19 19 H 1.48494 * 109.47285 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47086 * 300.00040 * 17 15 13 21 21 N 1.46506 * 109.47382 * 64.99443 * 3 2 1 22 22 C 1.46760 * 124.35031 * 240.00544 * 21 3 2 23 23 C 1.54481 * 105.46982 * 197.01507 * 22 21 3 24 24 C 1.54631 * 101.76558 * 334.58316 * 23 22 21 25 25 C 1.34421 * 124.34330 * 59.70349 * 21 3 2 26 26 O 1.21274 * 124.94321 * 359.56831 * 25 21 3 27 27 H 1.08997 * 109.47061 * 60.00535 * 1 2 3 28 28 H 1.09003 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47466 * 300.00355 * 1 2 3 30 30 H 1.08995 * 109.47657 * 239.99623 * 2 1 3 31 31 H 1.08997 * 109.47061 * 119.99465 * 2 1 3 32 32 H 1.09000 * 109.47070 * 300.00162 * 8 7 5 33 33 H 1.09001 * 109.46626 * 60.00180 * 8 7 5 34 34 H 0.96996 * 119.99844 * 359.97438 * 11 9 8 35 35 H 1.09004 * 109.46923 * 300.00119 * 12 11 9 36 36 H 1.09004 * 109.47042 * 59.99705 * 12 11 9 37 37 H 0.97000 * 120.00540 * 180.02562 * 16 15 13 38 38 H 1.08999 * 110.24466 * 316.01418 * 22 21 3 39 39 H 1.08998 * 110.24670 * 78.01979 * 22 21 3 40 40 H 1.09001 * 110.96726 * 92.70370 * 23 22 21 41 41 H 1.09000 * 110.96740 * 216.46577 * 23 22 21 42 42 H 1.09006 * 110.47986 * 143.47637 * 24 23 22 43 43 H 1.08994 * 110.48478 * 265.98628 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5418 1.4444 -0.1239 6 8 4.2190 1.9418 0.7445 7 8 4.1273 0.8934 -1.1987 8 6 5.5780 0.9308 -1.2509 9 6 6.0521 0.2711 -2.5202 10 8 5.2468 -0.1860 -3.3034 11 7 7.3711 0.1882 -2.7845 12 6 7.8320 -0.4527 -4.0186 13 6 9.3375 -0.4140 -4.0728 14 1 9.8952 0.0427 -3.2685 15 6 10.0029 -0.9606 -5.1495 16 7 9.3238 -1.5163 -6.1291 17 14 11.8691 -0.9120 -5.2170 18 1 12.4257 -1.6361 -4.0460 19 1 12.3363 -1.5617 -6.4679 20 1 12.3288 0.4998 -5.1903 21 7 1.6523 2.0976 1.2518 22 6 0.8074 3.2949 1.3327 23 6 1.0289 3.8602 2.7532 24 6 1.4530 2.5945 3.5337 25 6 2.0201 1.6758 2.4740 26 8 2.7085 0.7021 2.6947 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 5.9156 1.9670 -1.2324 33 1 5.9862 0.4002 -0.3907 34 1 8.0152 0.5534 -2.1579 35 1 7.4938 -1.4887 -4.0382 36 1 7.4241 0.0790 -4.8783 37 1 9.7918 -1.9012 -6.8865 38 1 1.1150 4.0249 0.5840 39 1 -0.2399 3.0277 1.1922 40 1 1.8243 4.6055 2.7568 41 1 0.1052 4.2757 3.1561 42 1 2.2128 2.8406 4.2756 43 1 0.5888 2.1341 4.0124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745693299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:21 Heat of formation + Delta-G solvation = -157.066516 kcal Electronic energy + Delta-G solvation = -25962.608298 eV Core-core repulsion = 22008.077268 eV Total energy + Delta-G solvation = -3954.531030 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.29350 -40.04793 -38.65499 -36.70476 -36.30820 -35.28570 -34.24133 -32.40587 -31.36790 -29.50042 -27.97550 -27.73008 -26.41902 -22.86429 -22.55689 -22.29474 -21.67049 -19.93948 -19.33342 -17.83604 -17.67312 -17.19103 -16.71989 -16.56542 -16.20441 -15.53581 -15.15901 -14.95214 -14.80261 -14.49636 -14.26305 -13.98603 -13.80833 -13.50839 -13.25883 -13.11822 -12.91153 -12.77982 -12.54246 -12.11045 -11.97735 -11.95329 -11.77047 -11.55476 -11.42510 -11.25352 -11.03086 -10.90090 -10.66979 -10.58566 -10.34319 -9.89473 -9.45340 -9.22213 -9.08128 -8.77509 -7.98434 -6.19151 -4.26618 1.98800 2.11880 2.50818 2.79943 3.18409 3.24745 3.29530 3.31086 3.89256 4.02580 4.06554 4.32879 4.38336 4.49155 4.57508 4.63945 4.70576 4.99214 5.02928 5.08999 5.10519 5.16836 5.21619 5.26093 5.29293 5.35512 5.40235 5.42788 5.56135 5.71195 5.78098 5.98989 6.12586 6.33590 6.78203 7.22669 7.31138 7.46067 7.58662 7.66734 7.92310 7.95980 8.50345 8.71251 8.96564 9.39657 10.90946 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.029787 B = 0.002359 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.770249 B =11864.492224 C =12330.644173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.175 3.825 4 H 0.128 0.872 5 C 0.448 3.552 6 O -0.492 6.492 7 O -0.326 6.326 8 C 0.050 3.950 9 C 0.501 3.499 10 O -0.534 6.534 11 N -0.706 5.706 12 C 0.252 3.748 13 C -0.546 4.546 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.906 3.094 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 N -0.611 5.611 22 C 0.104 3.896 23 C -0.131 4.131 24 C -0.153 4.153 25 C 0.525 3.475 26 O -0.514 6.514 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.393 0.607 35 H 0.030 0.970 36 H 0.029 0.971 37 H 0.267 0.733 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.711 11.553 17.213 29.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.070 3.930 4 H 0.146 0.854 5 C 0.288 3.712 6 O -0.379 6.379 7 O -0.241 6.241 8 C -0.028 4.028 9 C 0.284 3.716 10 O -0.412 6.412 11 N -0.357 5.357 12 C 0.132 3.868 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.733 3.267 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.200 1.200 21 N -0.347 5.347 22 C -0.019 4.019 23 C -0.168 4.168 24 C -0.194 4.194 25 C 0.313 3.687 26 O -0.389 6.389 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.226 0.774 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.622 10.694 16.738 28.632 hybrid contribution 1.585 0.355 0.206 1.637 sum -19.036 11.049 16.944 27.777 Atomic orbital electron populations 1.21696 0.94265 1.02389 1.01734 1.21938 0.97260 0.93130 1.05382 1.20428 0.87531 0.97186 0.87838 0.85402 1.23990 0.92298 0.75212 0.79658 1.90675 1.65218 1.42023 1.39935 1.86529 1.22549 1.72258 1.42750 1.22866 0.77801 1.02956 0.99148 1.19868 0.83956 0.81120 0.86698 1.90702 1.53837 1.47805 1.48821 1.46366 1.04837 1.58927 1.25538 1.19172 0.94305 0.93265 0.80108 1.21171 0.90629 1.40076 1.06530 0.91828 1.24950 0.99187 0.94697 0.95138 1.69960 1.36051 1.37144 1.09054 0.86445 0.84341 0.78399 0.77554 1.20022 1.21037 1.20037 1.48071 1.51576 1.29960 1.05062 1.22154 0.94713 0.86318 0.98673 1.22592 1.03245 0.97183 0.93827 1.22307 1.03206 0.95884 0.97956 1.20838 0.78887 0.84958 0.84006 1.90733 1.36831 1.27784 1.83512 0.92293 0.91914 0.92825 0.88665 0.89705 0.88653 0.88519 0.77429 0.95238 0.95259 0.92313 0.90175 0.90532 0.89799 0.89004 0.87930 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.80 37.16 0.36 -0.72 16 2 C -0.14 -1.46 5.32 -26.73 -0.14 -1.60 16 3 C 0.18 1.86 2.78 -69.08 -0.19 1.67 16 4 H 0.13 0.99 8.07 -51.92 -0.42 0.57 16 5 C 0.45 6.59 6.96 36.00 0.25 6.84 16 6 O -0.49 -8.34 14.67 -23.99 -0.35 -8.69 16 7 O -0.33 -5.35 9.56 -45.89 -0.44 -5.79 16 8 C 0.05 0.81 5.94 36.01 0.21 1.02 16 9 C 0.50 10.27 7.91 -10.99 -0.09 10.18 16 10 O -0.53 -13.13 16.50 -14.11 -0.23 -13.37 16 11 N -0.71 -14.93 5.55 -61.47 -0.34 -15.27 16 12 C 0.25 6.65 5.43 -5.20 -0.03 6.62 16 13 C -0.55 -14.77 9.28 -34.44 -0.32 -15.08 16 14 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.88 -25.98 13.29 55.43 0.74 -25.24 16 17 Si 0.91 20.85 29.54 -169.99 -5.02 15.82 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 N -0.61 -5.75 2.07 -166.16 -0.34 -6.09 16 22 C 0.10 0.53 7.30 -3.12 -0.02 0.51 16 23 C -0.13 -0.55 7.18 -25.10 -0.18 -0.73 16 24 C -0.15 -1.04 6.86 -26.74 -0.18 -1.22 16 25 C 0.53 6.08 6.69 -10.86 -0.07 6.00 16 26 O -0.51 -8.37 15.36 -8.58 -0.13 -8.50 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.38 7.75 -51.93 -0.40 -0.03 16 30 H 0.09 1.06 7.99 -51.93 -0.42 0.65 16 31 H 0.08 1.09 6.60 -51.93 -0.34 0.75 16 32 H 0.10 1.34 8.13 -51.93 -0.42 0.92 16 33 H 0.10 1.45 8.13 -51.93 -0.42 1.03 16 34 H 0.39 7.04 8.32 -40.82 -0.34 6.70 16 35 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -37.05 367.09 -7.61 -44.67 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.53 Total: 1.74 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: -0.50 Total: 15.18 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.05 Total: -46.60 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.16 Total: -36.35 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.05 -7.61 -44.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745693299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.397 kcal (2) G-P(sol) polarization free energy of solvation -37.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds