Wall clock time and date at job start Fri Apr 10 2020 18:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47232 * 2 1 4 4 H 1.09009 * 109.47055 * 305.00197 * 3 2 1 5 5 C 1.50696 * 109.47495 * 185.00193 * 3 2 1 6 6 O 1.20833 * 119.99595 * 239.99944 * 5 3 2 7 7 O 1.34224 * 120.00302 * 59.99416 * 5 3 2 8 8 C 1.45206 * 117.00077 * 180.02562 * 7 5 3 9 9 C 1.50699 * 109.47021 * 180.02562 * 8 7 5 10 10 O 1.21282 * 120.00041 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00169 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47324 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99822 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00339 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99769 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00300 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46819 * 59.99744 * 17 15 13 19 19 H 1.48494 * 109.47285 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47086 * 300.00040 * 17 15 13 21 21 N 1.46506 * 109.47382 * 64.99443 * 3 2 1 22 22 C 1.46760 * 124.35031 * 240.00544 * 21 3 2 23 23 C 1.54481 * 105.46982 * 197.01507 * 22 21 3 24 24 C 1.54631 * 101.76558 * 334.58316 * 23 22 21 25 25 C 1.34421 * 124.34330 * 59.70349 * 21 3 2 26 26 O 1.21274 * 124.94321 * 359.56831 * 25 21 3 27 27 H 1.08997 * 109.47061 * 60.00535 * 1 2 3 28 28 H 1.09003 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47466 * 300.00355 * 1 2 3 30 30 H 1.08995 * 109.47657 * 239.99623 * 2 1 3 31 31 H 1.08997 * 109.47061 * 119.99465 * 2 1 3 32 32 H 1.09000 * 109.47070 * 300.00162 * 8 7 5 33 33 H 1.09001 * 109.46626 * 60.00180 * 8 7 5 34 34 H 0.96996 * 119.99844 * 359.97438 * 11 9 8 35 35 H 1.09004 * 109.46923 * 300.00119 * 12 11 9 36 36 H 1.09004 * 109.47042 * 59.99705 * 12 11 9 37 37 H 0.97000 * 120.00540 * 180.02562 * 16 15 13 38 38 H 1.08999 * 110.24466 * 316.01418 * 22 21 3 39 39 H 1.08998 * 110.24670 * 78.01979 * 22 21 3 40 40 H 1.09001 * 110.96726 * 92.70370 * 23 22 21 41 41 H 1.09000 * 110.96740 * 216.46577 * 23 22 21 42 42 H 1.09006 * 110.47986 * 143.47637 * 24 23 22 43 43 H 1.08994 * 110.48478 * 265.98628 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5418 1.4444 -0.1239 6 8 4.2190 1.9418 0.7445 7 8 4.1273 0.8934 -1.1987 8 6 5.5780 0.9308 -1.2509 9 6 6.0521 0.2711 -2.5202 10 8 5.2468 -0.1860 -3.3034 11 7 7.3711 0.1882 -2.7845 12 6 7.8320 -0.4527 -4.0186 13 6 9.3375 -0.4140 -4.0728 14 1 9.8952 0.0427 -3.2685 15 6 10.0029 -0.9606 -5.1495 16 7 9.3238 -1.5163 -6.1291 17 14 11.8691 -0.9120 -5.2170 18 1 12.4257 -1.6361 -4.0460 19 1 12.3363 -1.5617 -6.4679 20 1 12.3288 0.4998 -5.1903 21 7 1.6523 2.0976 1.2518 22 6 0.8074 3.2949 1.3327 23 6 1.0289 3.8602 2.7532 24 6 1.4530 2.5945 3.5337 25 6 2.0201 1.6758 2.4740 26 8 2.7085 0.7021 2.6947 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 5.9156 1.9670 -1.2324 33 1 5.9862 0.4002 -0.3907 34 1 8.0152 0.5534 -2.1579 35 1 7.4938 -1.4887 -4.0382 36 1 7.4241 0.0790 -4.8783 37 1 9.7918 -1.9012 -6.8865 38 1 1.1150 4.0249 0.5840 39 1 -0.2399 3.0277 1.1922 40 1 1.8243 4.6055 2.7568 41 1 0.1052 4.2757 3.1561 42 1 2.2128 2.8406 4.2756 43 1 0.5888 2.1341 4.0124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745693299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:20 Heat of formation + Delta-G solvation = -182.439912 kcal Electronic energy + Delta-G solvation = -25963.708571 eV Core-core repulsion = 22008.077268 eV Total energy + Delta-G solvation = -3955.631303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.26369 -41.14386 -40.29762 -37.71014 -37.44595 -36.21706 -36.02279 -34.44372 -31.98779 -31.02815 -29.10719 -28.45861 -27.89945 -24.71873 -23.46682 -22.78979 -22.74864 -21.69726 -20.27042 -19.24704 -18.92280 -18.24167 -17.94462 -17.56083 -17.37188 -17.18785 -16.86558 -16.26237 -16.08155 -15.65583 -15.42752 -14.83235 -14.68205 -14.55805 -14.46117 -14.24352 -14.01816 -13.85333 -13.76663 -13.53960 -13.33994 -13.03663 -12.97876 -12.70137 -12.45137 -12.25941 -12.20505 -12.04469 -11.95415 -11.88165 -11.64374 -11.54505 -10.96914 -10.82671 -10.74582 -9.96886 -9.86104 -8.31184 -6.48050 0.90553 1.01240 1.42794 1.46264 1.49528 1.54742 1.67584 1.92978 2.32396 2.52064 3.03744 3.34855 3.52220 3.62098 3.67648 3.73553 3.86728 3.95154 3.96673 4.09490 4.17370 4.34102 4.40739 4.66686 4.69645 4.75206 4.89503 5.02296 5.05266 5.06907 5.11619 5.15394 5.19357 5.24956 5.31924 5.38218 5.43980 5.59776 5.79719 6.08005 6.46235 6.59813 6.73357 7.14602 7.16859 7.31196 8.80700 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.029787 B = 0.002359 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.770249 B =11864.492224 C =12330.644173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 C 0.174 3.826 4 H 0.164 0.836 5 C 0.446 3.554 6 O -0.518 6.518 7 O -0.342 6.342 8 C 0.061 3.939 9 C 0.502 3.498 10 O -0.579 6.579 11 N -0.699 5.699 12 C 0.267 3.733 13 C -0.559 4.559 14 H 0.084 0.916 15 C 0.005 3.995 16 N -0.929 5.929 17 Si 0.985 3.015 18 H -0.264 1.264 19 H -0.285 1.285 20 H -0.262 1.262 21 N -0.608 5.608 22 C 0.095 3.905 23 C -0.120 4.120 24 C -0.149 4.149 25 C 0.507 3.493 26 O -0.576 6.576 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.124 0.876 33 H 0.111 0.889 34 H 0.412 0.588 35 H -0.008 1.008 36 H -0.005 1.005 37 H 0.270 0.730 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.456 13.849 18.522 31.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.173 4.173 3 C 0.069 3.931 4 H 0.181 0.819 5 C 0.287 3.713 6 O -0.405 6.405 7 O -0.257 6.257 8 C -0.016 4.016 9 C 0.288 3.712 10 O -0.459 6.459 11 N -0.350 5.350 12 C 0.145 3.855 13 C -0.597 4.597 14 H 0.103 0.897 15 C -0.195 4.195 16 N -0.567 5.567 17 Si 0.808 3.192 18 H -0.188 1.188 19 H -0.210 1.210 20 H -0.186 1.186 21 N -0.343 5.343 22 C -0.025 4.025 23 C -0.157 4.157 24 C -0.189 4.189 25 C 0.297 3.703 26 O -0.455 6.455 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.141 0.859 33 H 0.129 0.871 34 H 0.248 0.752 35 H 0.010 0.990 36 H 0.013 0.987 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.145 0.855 42 H 0.116 0.884 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.396 13.056 18.085 30.908 hybrid contribution 1.735 -0.357 -0.188 1.781 sum -19.662 12.699 17.897 29.464 Atomic orbital electron populations 1.21654 0.91534 1.02920 1.03111 1.21866 0.99514 0.92761 1.03186 1.20652 0.84667 0.97942 0.89837 0.81891 1.24918 0.93855 0.73990 0.78500 1.90656 1.66104 1.43277 1.40496 1.86539 1.22357 1.72860 1.43915 1.22693 0.78453 1.04026 0.96429 1.20559 0.83094 0.80015 0.87558 1.90677 1.54890 1.49608 1.50749 1.46059 1.05862 1.58696 1.24415 1.18642 0.94590 0.91074 0.81200 1.21568 0.90761 1.40104 1.07274 0.89750 1.26048 1.04960 0.93924 0.94531 1.70119 1.38500 1.38176 1.09917 0.85201 0.77214 0.79044 0.77726 1.18832 1.20998 1.18609 1.48297 1.51213 1.30819 1.03951 1.22561 0.95447 0.84876 0.99630 1.22648 1.04696 0.95634 0.92728 1.22365 1.03584 0.96178 0.96770 1.21790 0.78123 0.84687 0.85704 1.90691 1.39675 1.30505 1.84618 0.90253 0.91923 0.91935 0.90016 0.92793 0.85852 0.87075 0.75235 0.98977 0.98701 0.92135 0.88941 0.87580 0.90218 0.85543 0.88367 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.80 71.98 0.71 -1.09 16 2 C -0.13 -2.83 5.32 30.59 0.16 -2.67 16 3 C 0.17 3.51 2.78 44.24 0.12 3.63 16 4 H 0.16 2.08 8.07 -2.38 -0.02 2.06 16 5 C 0.45 13.00 6.96 71.23 0.50 13.50 16 6 O -0.52 -17.50 14.67 26.95 0.40 -17.11 16 7 O -0.34 -11.23 9.56 -45.00 -0.43 -11.66 16 8 C 0.06 1.95 5.94 71.24 0.42 2.37 16 9 C 0.50 20.98 7.91 87.66 0.69 21.68 16 10 O -0.58 -29.58 16.50 15.76 0.26 -29.32 16 11 N -0.70 -29.94 5.55 -466.78 -2.59 -32.53 16 12 C 0.27 14.67 5.43 85.63 0.46 15.13 16 13 C -0.56 -30.41 9.28 25.60 0.24 -30.17 16 14 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 15 C 0.01 0.30 5.46 84.65 0.46 0.76 16 16 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 17 Si 0.99 42.36 29.54 68.60 2.03 44.39 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 N -0.61 -10.40 2.07 -798.20 -1.66 -12.06 16 22 C 0.10 0.62 7.30 86.83 0.63 1.26 16 23 C -0.12 -0.58 7.18 31.65 0.23 -0.35 16 24 C -0.15 -1.73 6.86 30.59 0.21 -1.52 16 25 C 0.51 11.50 6.69 87.90 0.59 12.09 16 26 O -0.58 -19.54 15.36 10.52 0.16 -19.38 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.73 7.75 -2.38 -0.02 0.71 16 30 H 0.08 1.90 7.99 -2.39 -0.02 1.88 16 31 H 0.05 1.47 6.60 -2.39 -0.02 1.46 16 32 H 0.12 3.28 8.13 -2.39 -0.02 3.26 16 33 H 0.11 3.27 8.13 -2.39 -0.02 3.25 16 34 H 0.41 14.45 8.32 -92.71 -0.77 13.68 16 35 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.00 -0.30 8.14 -2.38 -0.02 -0.32 16 37 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 38 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.08 0.48 8.14 -2.39 -0.02 0.47 16 41 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -85.78 367.09 4.13 -81.65 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.25 Total: 16.96 kcal Atomic # 6 Polarization: 29.19 SS G_CDS: 5.43 Total: 34.62 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -3.96 Total: -100.15 kcal Atomic # 8 Polarization: -77.85 SS G_CDS: 0.39 Total: -77.47 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -85.78 4.13 -81.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745693299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.789 kcal (2) G-P(sol) polarization free energy of solvation -85.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds