Wall clock time and date at job start Fri Apr 10 2020 18:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86805 * 120.00026 * 2 1 4 4 H 1.48498 * 109.47328 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46909 * 299.99729 * 3 2 1 6 6 H 1.48499 * 109.46993 * 59.99535 * 3 2 1 7 7 C 1.38944 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00334 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99793 * 359.97438 * 7 2 1 10 10 C 1.34786 * 120.00165 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99456 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00293 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.47406 * 180.02562 * 12 10 9 14 14 C 1.34230 * 117.00173 * 180.02562 * 13 12 10 15 15 O 1.20827 * 119.99597 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99758 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.46919 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47300 * 179.97438 * 17 16 14 19 19 O 1.21284 * 120.00109 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00137 * 179.97438 * 18 17 16 21 21 C 1.46506 * 119.99873 * 179.97438 * 20 18 17 22 22 C 1.54268 * 110.03351 * 272.90833 * 21 20 18 23 23 C 1.54960 * 104.16081 * 217.13577 * 22 21 20 24 24 C 1.54894 * 102.77798 * 37.89146 * 23 22 21 25 25 C 1.53876 * 110.02735 * 155.69309 * 21 20 18 26 26 H 0.97003 * 120.00284 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00382 * 0.02562 * 9 7 2 28 28 H 1.09003 * 109.47377 * 59.99509 * 12 10 9 29 29 H 1.09003 * 109.47273 * 300.00342 * 12 10 9 30 30 H 1.09000 * 109.47319 * 60.00517 * 16 14 13 31 31 H 1.08987 * 109.47394 * 299.99672 * 16 14 13 32 32 H 1.09004 * 109.46930 * 60.00101 * 17 16 14 33 33 H 1.09000 * 109.47312 * 300.00045 * 17 16 14 34 34 H 0.96995 * 120.00018 * 0.27749 * 20 18 17 35 35 H 1.08996 * 110.01518 * 34.30257 * 21 20 18 36 36 H 1.09004 * 110.48628 * 335.78894 * 22 21 20 37 37 H 1.09007 * 110.48293 * 98.42755 * 22 21 20 38 38 H 1.08999 * 110.72063 * 279.58023 * 23 22 21 39 39 H 1.09000 * 110.91947 * 156.29644 * 23 22 21 40 40 H 1.09000 * 110.48739 * 203.40857 * 24 23 22 41 41 H 1.09000 * 110.59948 * 80.80998 * 24 23 22 42 42 H 1.08997 * 110.03107 * 238.56635 * 25 21 20 43 43 H 1.08992 * 110.03504 * 0.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 8 2.1873 -5.9666 -0.0004 14 6 1.6743 -7.2069 -0.0013 15 8 0.4764 -7.3652 -0.0022 16 6 2.5923 -8.4020 -0.0012 17 6 1.7591 -9.6852 -0.0018 18 6 2.6770 -10.8803 -0.0023 19 8 3.8794 -10.7214 -0.0018 20 7 2.1619 -12.1257 -0.0023 21 6 3.0544 -13.2876 -0.0034 22 6 3.4335 -13.6614 -1.4513 23 6 3.4776 -15.2103 -1.4438 24 6 2.2949 -15.5822 -0.5151 25 6 2.3310 -14.5083 0.5919 26 1 -0.4851 0.8400 -0.0004 27 1 0.3533 -2.3906 -0.0005 28 1 0.6174 -4.9205 -0.8913 29 1 0.6167 -4.9209 0.8886 30 1 3.2205 -8.3776 0.8892 31 1 3.2217 -8.3768 -0.8907 32 1 1.1305 -9.7099 -0.8920 33 1 1.1299 -9.7103 0.8880 34 1 1.2003 -12.2528 -0.0060 35 1 3.9530 -13.0682 0.5731 36 1 2.6751 -13.3048 -2.1484 37 1 4.4109 -13.2524 -1.7074 38 1 4.4206 -15.5673 -1.0299 39 1 3.3217 -15.6090 -2.4462 40 1 2.4420 -16.5745 -0.0889 41 1 1.3514 -15.5376 -1.0592 42 1 2.8792 -14.8820 1.4567 43 1 1.3159 -14.2365 0.8811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767765661.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:28 Heat of formation + Delta-G solvation = -203.591863 kcal Electronic energy + Delta-G solvation = -24552.401084 eV Core-core repulsion = 20595.852563 eV Total energy + Delta-G solvation = -3956.548521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.75001 -40.95759 -40.03628 -38.71407 -37.57689 -36.04233 -34.69344 -34.03543 -33.41776 -30.27704 -29.64161 -28.89875 -26.95692 -25.99466 -22.36938 -21.60669 -21.43408 -21.30621 -21.05977 -20.08068 -19.15598 -18.02977 -17.95776 -17.82303 -17.25738 -16.96051 -16.67296 -16.37510 -16.06881 -15.76385 -15.71217 -15.30026 -14.74078 -14.51604 -14.29192 -14.23392 -13.71006 -13.65558 -13.56203 -13.11577 -12.95109 -12.93403 -12.47288 -12.47108 -12.27173 -12.11391 -12.01454 -11.95175 -11.84835 -11.75108 -11.65956 -11.59028 -11.47825 -10.92745 -10.52032 -10.12187 -10.05447 -8.53097 -6.03683 1.09477 1.33355 1.34414 1.44529 1.58731 1.60205 1.86459 2.21771 2.33596 3.05729 3.12455 3.48543 3.60953 3.71111 3.79601 3.96527 4.02569 4.04608 4.13084 4.17440 4.22860 4.47354 4.52923 4.55442 4.58008 4.64054 4.75589 4.78493 4.88178 4.92338 5.05211 5.17257 5.23707 5.28898 5.33986 5.37491 5.45834 5.61982 5.88745 6.45256 6.53627 6.63501 7.02719 7.24604 7.39340 7.93465 8.64090 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.054717 B = 0.001716 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.597648 B =16314.509108 C =16607.651581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.998 3.002 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.340 4.340 8 H 0.083 0.917 9 N -0.557 5.557 10 C 0.434 3.566 11 O -0.620 6.620 12 C 0.072 3.928 13 O -0.348 6.348 14 C 0.464 3.536 15 O -0.527 6.527 16 C -0.093 4.093 17 C -0.120 4.120 18 C 0.517 3.483 19 O -0.581 6.581 20 N -0.712 5.712 21 C 0.135 3.865 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.126 4.126 26 H 0.281 0.719 27 H 0.400 0.600 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.417 0.583 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 -30.747 -0.545 30.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.208 4.208 3 Si 0.821 3.179 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.101 0.899 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.507 6.507 12 C -0.006 4.006 13 O -0.263 6.263 14 C 0.309 3.691 15 O -0.417 6.417 16 C -0.130 4.130 17 C -0.160 4.160 18 C 0.304 3.696 19 O -0.461 6.461 20 N -0.364 5.364 21 C 0.030 3.970 22 C -0.175 4.175 23 C -0.161 4.161 24 C -0.158 4.158 25 C -0.164 4.164 26 H 0.091 0.909 27 H 0.235 0.765 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.254 0.746 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.115 -30.503 -0.526 30.528 hybrid contribution -0.551 1.098 -0.036 1.229 sum -1.666 -29.406 -0.563 29.458 Atomic orbital electron populations 1.69670 1.06902 1.29677 1.49171 1.26109 0.96591 1.02525 0.95614 0.84797 0.78006 0.76590 0.78474 1.19721 1.19385 1.19394 1.19762 0.92938 0.83471 1.50692 0.89902 1.41742 1.09555 1.04157 1.64030 1.20201 0.88099 0.85553 0.84074 1.90533 1.15634 1.87751 1.56771 1.22521 0.90098 0.82412 1.05520 1.86568 1.41000 1.15342 1.83422 1.24249 0.88932 0.84498 0.71420 1.90635 1.17443 1.86804 1.46822 1.21078 0.97020 0.87180 1.07770 1.21404 0.97683 0.89177 1.07713 1.20765 0.88696 0.85347 0.74789 1.90731 1.17404 1.86710 1.51211 1.46099 1.11147 1.04658 1.74537 1.21705 0.93373 0.85254 0.96662 1.22785 1.01239 0.97143 0.96333 1.22493 0.99197 0.93821 1.00593 1.22359 0.98678 0.98655 0.96104 1.22419 1.01428 0.93640 0.98900 0.90939 0.76496 0.87341 0.87340 0.86616 0.86668 0.86277 0.86192 0.74578 0.91336 0.91077 0.93029 0.91321 0.90677 0.90385 0.90692 0.90377 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.47 13.05 21.66 0.28 -48.19 16 2 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 3 Si 1.00 42.28 29.55 68.60 2.03 44.31 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.34 -19.25 9.68 84.04 0.81 -18.43 16 8 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -28.77 5.29 -306.99 -1.62 -30.39 16 10 C 0.43 21.47 7.86 87.65 0.69 22.16 16 11 O -0.62 -36.08 16.08 15.74 0.25 -35.83 16 12 C 0.07 2.68 5.94 71.23 0.42 3.11 16 13 O -0.35 -12.88 9.75 -45.06 -0.44 -13.32 16 14 C 0.46 13.48 7.96 71.23 0.57 14.05 16 15 O -0.53 -16.01 15.73 21.96 0.35 -15.67 16 16 C -0.09 -2.04 5.10 29.85 0.15 -1.89 16 17 C -0.12 -1.89 4.99 29.85 0.15 -1.75 16 18 C 0.52 9.46 7.82 87.66 0.69 10.15 16 19 O -0.58 -15.82 15.65 -3.04 -0.05 -15.86 16 20 N -0.71 -8.61 5.04 -439.09 -2.21 -10.83 16 21 C 0.13 1.73 3.23 45.72 0.15 1.88 16 22 C -0.14 -1.78 6.54 31.69 0.21 -1.57 16 23 C -0.12 -1.09 6.91 31.91 0.22 -0.87 16 24 C -0.12 -0.74 6.83 31.67 0.22 -0.53 16 25 C -0.13 -0.92 6.57 31.32 0.21 -0.71 16 26 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 27 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 28 H 0.11 3.59 8.13 -2.39 -0.02 3.57 16 29 H 0.11 3.59 8.13 -2.39 -0.02 3.57 16 30 H 0.12 2.56 8.10 -2.39 -0.02 2.54 16 31 H 0.12 2.56 8.10 -2.39 -0.02 2.54 16 32 H 0.12 1.56 8.10 -2.38 -0.02 1.54 16 33 H 0.12 1.56 8.10 -2.39 -0.02 1.54 16 34 H 0.42 2.47 8.31 -92.71 -0.77 1.70 16 35 H 0.07 1.22 7.58 -2.39 -0.02 1.21 16 36 H 0.07 0.91 8.05 -2.39 -0.02 0.89 16 37 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.09 0.41 7.61 -2.39 -0.02 0.39 16 Total: -1.00 -75.11 368.84 3.07 -72.04 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: -0.46 Total: 28.07 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: 4.94 Total: 25.67 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -3.55 Total: -89.41 kcal Atomic # 8 Polarization: -80.79 SS G_CDS: 0.11 Total: -80.68 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -75.11 3.07 -72.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767765661.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.552 kcal (2) G-P(sol) polarization free energy of solvation -75.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds