Wall clock time and date at job start Fri Apr 10 2020 18:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99674 * 2 1 4 4 H 1.48496 * 109.46954 * 239.99637 * 3 2 1 5 5 H 1.48498 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46893 * 119.99660 * 3 2 1 7 7 C 1.37873 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99719 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00351 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47098 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99785 * 180.02562 * 10 9 7 12 12 O 1.21591 * 119.99752 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99878 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99883 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46916 * 179.97438 * 14 13 11 16 16 H 1.08990 * 109.47355 * 304.99361 * 15 14 13 17 17 O 1.42905 * 109.47166 * 64.99891 * 15 14 13 18 18 C 1.53000 * 109.46776 * 184.99371 * 15 14 13 19 19 O 1.42903 * 109.46726 * 174.99924 * 18 15 14 20 20 C 1.35904 * 116.99628 * 180.02562 * 19 18 15 21 21 C 1.38771 * 120.04254 * 359.72712 * 20 19 18 22 22 C 1.38137 * 119.99170 * 179.74512 * 21 20 19 23 23 C 1.38249 * 120.07851 * 0.52965 * 22 21 20 24 24 C 1.38476 * 120.08973 * 359.74253 * 23 22 21 25 25 F 1.35096 * 120.00395 * 179.97438 * 24 23 22 26 26 C 1.38388 * 119.99948 * 359.97438 * 24 23 22 27 27 H 0.97000 * 120.00479 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47280 * 59.99622 * 9 7 2 29 29 H 1.09009 * 109.46678 * 299.99748 * 9 7 2 30 30 H 0.96998 * 119.99891 * 359.97438 * 10 9 7 31 31 H 0.96999 * 120.00382 * 359.97438 * 13 11 10 32 32 H 1.08993 * 109.47191 * 59.99283 * 14 13 11 33 33 H 1.09001 * 109.46593 * 299.98917 * 14 13 11 34 34 H 0.96702 * 113.99974 * 59.99593 * 17 15 14 35 35 H 1.09002 * 109.47398 * 295.00168 * 18 15 14 36 36 H 1.09001 * 109.47194 * 55.00349 * 18 15 14 37 37 H 1.07997 * 120.00380 * 359.97438 * 21 20 19 38 38 H 1.07994 * 119.95751 * 180.27410 * 22 21 20 39 39 H 1.07999 * 119.95718 * 179.76792 * 23 22 21 40 40 H 1.08004 * 120.03532 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5585 -5.1055 0.0006 13 7 2.6297 -5.9077 0.0031 14 6 2.1414 -7.2889 0.0022 15 6 3.3315 -8.2506 0.0038 16 1 3.9857 -8.0204 -0.8370 17 8 4.0581 -8.1072 1.2260 18 6 2.8251 -9.6888 -0.1227 19 8 3.9384 -10.5772 -0.2383 20 6 3.6604 -11.9019 -0.3603 21 6 2.3430 -12.3380 -0.3628 22 6 2.0615 -13.6842 -0.4922 23 6 3.0912 -14.5994 -0.6083 24 6 4.4072 -14.1684 -0.6005 25 9 5.4121 -15.0643 -0.7135 26 6 4.6930 -12.8200 -0.4769 27 1 -0.4851 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 3.1568 -3.4353 0.0021 31 1 3.5834 -5.7304 0.0042 32 1 1.5375 -7.4602 -0.8888 33 1 1.5344 -7.4602 0.8912 34 1 3.5368 -8.2969 2.0181 35 1 2.2434 -9.9483 0.7619 36 1 2.1969 -9.7762 -1.0092 37 1 1.5378 -11.6247 -0.2674 38 1 1.0360 -14.0225 -0.4986 39 1 2.8690 -15.6518 -0.7055 40 1 5.7192 -12.4833 -0.4712 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785735522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:29 Heat of formation + Delta-G solvation = -142.483576 kcal Electronic energy + Delta-G solvation = -24091.254206 eV Core-core repulsion = 20013.895235 eV Total energy + Delta-G solvation = -4077.358972 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.34391 -40.66158 -39.40327 -38.25615 -37.06406 -34.38364 -33.85960 -32.33112 -31.69211 -30.71582 -29.95354 -27.45624 -25.82742 -23.52662 -22.96987 -22.28575 -21.93738 -20.18447 -19.05743 -18.14752 -17.59141 -17.06015 -16.83124 -16.51483 -16.29882 -16.04999 -15.93034 -15.48881 -15.32660 -14.72291 -14.53384 -14.47071 -14.25495 -13.90227 -13.53588 -13.13043 -13.03106 -12.87025 -12.58309 -12.40165 -11.96021 -11.76126 -11.70992 -11.44498 -11.21331 -10.98251 -10.87202 -10.53600 -10.30781 -9.48895 -9.39000 -9.37226 -8.87338 -8.78586 -8.69994 -7.78933 -6.15629 -4.22329 0.64196 0.80610 2.38704 3.10447 3.26111 3.27889 3.31326 3.35878 3.86474 3.88087 4.00510 4.17070 4.32463 4.39313 4.44163 4.46708 4.51307 4.59010 4.74616 4.89567 4.94248 5.04594 5.12917 5.20439 5.46200 5.54644 5.59681 5.69116 5.72517 5.83280 6.21428 6.71386 6.84558 7.08002 7.26319 7.48640 7.53410 7.55542 7.88572 8.02878 8.75079 8.91153 9.29625 9.46421 10.94526 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.046810 B = 0.001743 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.024311 B =16059.816409 C =16495.962627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.727 5.727 11 C 0.693 3.307 12 O -0.603 6.603 13 N -0.752 5.752 14 C 0.116 3.884 15 C 0.100 3.900 16 H 0.117 0.883 17 O -0.547 6.547 18 C 0.029 3.971 19 O -0.298 6.298 20 C 0.162 3.838 21 C -0.221 4.221 22 C -0.049 4.049 23 C -0.195 4.195 24 C 0.138 3.862 25 F -0.135 7.135 26 C -0.191 4.191 27 H 0.266 0.734 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.387 0.613 31 H 0.397 0.603 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.378 0.622 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.483 -28.201 -0.386 29.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.379 5.379 11 C 0.393 3.607 12 O -0.483 6.483 13 N -0.410 5.410 14 C -0.010 4.010 15 C 0.040 3.960 16 H 0.135 0.865 17 O -0.352 6.352 18 C -0.047 4.047 19 O -0.211 6.211 20 C 0.116 3.884 21 C -0.240 4.240 22 C -0.067 4.067 23 C -0.214 4.214 24 C 0.119 3.881 25 F -0.113 7.113 26 C -0.210 4.210 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.220 0.780 31 H 0.231 0.769 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.226 0.774 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.870 -27.984 -0.791 28.825 hybrid contribution 0.726 0.706 0.299 1.056 sum 7.595 -27.277 -0.492 28.319 Atomic orbital electron populations 1.69966 1.06090 1.27394 1.48861 1.24942 0.94922 0.99404 0.94737 0.86460 0.79387 0.82281 0.78673 1.20092 1.21082 1.20086 1.21195 0.93272 0.90438 1.53253 0.91954 1.18988 0.87765 0.81050 0.97613 1.45717 1.10906 1.04337 1.76973 1.16122 0.85079 0.81092 0.78403 1.90873 1.14245 1.84280 1.58856 1.44932 1.09267 1.04287 1.82563 1.21528 0.94955 0.81316 1.03245 1.22156 0.94281 0.90027 0.89509 0.86492 1.86657 1.41309 1.92114 1.15167 1.23580 0.88449 0.89772 1.02927 1.86141 1.34517 1.13380 1.87042 1.18642 0.92579 0.83502 0.93682 1.21397 0.95509 0.97592 1.09483 1.20816 0.99270 0.91864 0.94776 1.21071 0.90883 1.01391 1.08037 1.17296 0.84785 0.85996 1.00030 1.91523 1.59705 1.66889 1.93180 1.20276 1.00295 0.90394 1.10068 0.92406 0.95718 0.95727 0.78034 0.76903 0.90726 0.91246 0.77422 0.90805 0.90190 0.84576 0.84538 0.84573 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.27 7.12 5.43 -5.19 -0.03 7.09 16 10 N -0.73 -15.42 5.55 -66.41 -0.37 -15.79 16 11 C 0.69 13.93 8.57 -86.92 -0.74 13.18 16 12 O -0.60 -14.66 16.34 5.29 0.09 -14.57 16 13 N -0.75 -10.54 5.51 -65.22 -0.36 -10.90 16 14 C 0.12 1.24 5.31 -4.04 -0.02 1.22 16 15 C 0.10 0.81 3.28 -26.73 -0.09 0.73 16 16 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 17 O -0.55 -4.99 13.25 -40.09 -0.53 -5.52 16 18 C 0.03 0.19 4.37 37.16 0.16 0.36 16 19 O -0.30 -2.69 10.10 -24.29 -0.25 -2.93 16 20 C 0.16 1.38 6.68 -39.23 -0.26 1.12 16 21 C -0.22 -1.51 9.04 -39.42 -0.36 -1.87 16 22 C -0.05 -0.30 10.04 -39.61 -0.40 -0.69 16 23 C -0.19 -1.33 10.02 -39.49 -0.40 -1.72 16 24 C 0.14 1.16 7.30 -39.44 -0.29 0.87 16 25 F -0.13 -1.23 17.27 2.25 0.04 -1.19 16 26 C -0.19 -1.66 9.97 -39.37 -0.39 -2.05 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 28 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.02 0.73 8.14 -51.92 -0.42 0.30 16 30 H 0.39 7.05 8.34 -40.82 -0.34 6.71 16 31 H 0.40 4.72 8.49 -40.82 -0.35 4.37 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.38 2.32 9.05 45.56 0.41 2.74 16 35 H 0.07 0.39 7.65 -51.93 -0.40 -0.01 16 36 H 0.08 0.44 7.67 -51.93 -0.40 0.04 16 37 H 0.14 0.70 6.30 -52.49 -0.33 0.37 16 38 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 39 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 355.18 15.07 5.35 5.35 Total: -1.00 -34.78 355.18 -7.86 -42.64 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.32 Total: 7.60 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -3.23 Total: 4.82 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.01 Total: -52.01 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.69 Total: -23.02 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.78 -7.86 -42.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785735522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.847 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds