Wall clock time and date at job start Fri Apr 10 2020 18:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99674 * 2 1 4 4 H 1.48496 * 109.46954 * 239.99637 * 3 2 1 5 5 H 1.48498 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46893 * 119.99660 * 3 2 1 7 7 C 1.37873 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99719 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00351 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47098 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99785 * 180.02562 * 10 9 7 12 12 O 1.21591 * 119.99752 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99878 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99883 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46916 * 179.97438 * 14 13 11 16 16 H 1.08990 * 109.47355 * 304.99361 * 15 14 13 17 17 O 1.42905 * 109.47166 * 64.99891 * 15 14 13 18 18 C 1.53000 * 109.46776 * 184.99371 * 15 14 13 19 19 O 1.42903 * 109.46726 * 174.99924 * 18 15 14 20 20 C 1.35904 * 116.99628 * 180.02562 * 19 18 15 21 21 C 1.38771 * 120.04254 * 359.72712 * 20 19 18 22 22 C 1.38137 * 119.99170 * 179.74512 * 21 20 19 23 23 C 1.38249 * 120.07851 * 0.52965 * 22 21 20 24 24 C 1.38476 * 120.08973 * 359.74253 * 23 22 21 25 25 F 1.35096 * 120.00395 * 179.97438 * 24 23 22 26 26 C 1.38388 * 119.99948 * 359.97438 * 24 23 22 27 27 H 0.97000 * 120.00479 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47280 * 59.99622 * 9 7 2 29 29 H 1.09009 * 109.46678 * 299.99748 * 9 7 2 30 30 H 0.96998 * 119.99891 * 359.97438 * 10 9 7 31 31 H 0.96999 * 120.00382 * 359.97438 * 13 11 10 32 32 H 1.08993 * 109.47191 * 59.99283 * 14 13 11 33 33 H 1.09001 * 109.46593 * 299.98917 * 14 13 11 34 34 H 0.96702 * 113.99974 * 59.99593 * 17 15 14 35 35 H 1.09002 * 109.47398 * 295.00168 * 18 15 14 36 36 H 1.09001 * 109.47194 * 55.00349 * 18 15 14 37 37 H 1.07997 * 120.00380 * 359.97438 * 21 20 19 38 38 H 1.07994 * 119.95751 * 180.27410 * 22 21 20 39 39 H 1.07999 * 119.95718 * 179.76792 * 23 22 21 40 40 H 1.08004 * 120.03532 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5585 -5.1055 0.0006 13 7 2.6297 -5.9077 0.0031 14 6 2.1414 -7.2889 0.0022 15 6 3.3315 -8.2506 0.0038 16 1 3.9857 -8.0204 -0.8370 17 8 4.0581 -8.1072 1.2260 18 6 2.8251 -9.6888 -0.1227 19 8 3.9384 -10.5772 -0.2383 20 6 3.6604 -11.9019 -0.3603 21 6 2.3430 -12.3380 -0.3628 22 6 2.0615 -13.6842 -0.4922 23 6 3.0912 -14.5994 -0.6083 24 6 4.4072 -14.1684 -0.6005 25 9 5.4121 -15.0643 -0.7135 26 6 4.6930 -12.8200 -0.4769 27 1 -0.4851 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 3.1568 -3.4353 0.0021 31 1 3.5834 -5.7304 0.0042 32 1 1.5375 -7.4602 -0.8888 33 1 1.5344 -7.4602 0.8912 34 1 3.5368 -8.2969 2.0181 35 1 2.2434 -9.9483 0.7619 36 1 2.1969 -9.7762 -1.0092 37 1 1.5378 -11.6247 -0.2674 38 1 1.0360 -14.0225 -0.4986 39 1 2.8690 -15.6518 -0.7055 40 1 5.7192 -12.4833 -0.4712 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785735522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:28 Heat of formation + Delta-G solvation = -170.274763 kcal Electronic energy + Delta-G solvation = -24092.459323 eV Core-core repulsion = 20013.895235 eV Total energy + Delta-G solvation = -4078.564088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.98715 -41.27880 -40.84653 -39.03070 -37.76074 -36.16846 -35.25447 -34.28628 -32.33414 -31.41450 -30.63072 -29.22096 -26.91585 -24.61283 -24.02431 -23.33393 -22.62708 -21.78812 -19.81486 -19.62993 -18.36008 -18.00705 -17.70792 -17.45189 -17.17220 -16.93757 -16.77899 -16.71635 -16.46642 -16.31925 -15.64440 -15.38885 -15.07442 -14.86602 -14.72591 -14.38392 -14.21194 -13.98942 -13.71717 -13.44449 -13.15836 -12.91391 -12.89983 -12.66618 -12.31783 -12.22155 -11.97265 -11.84314 -11.48523 -11.36966 -11.12371 -10.78083 -10.28396 -9.93579 -9.58045 -9.34054 -8.27020 -6.43269 0.08735 0.26463 1.44448 1.48752 1.56201 1.63026 2.13572 2.24902 2.41507 2.56680 3.07854 3.27731 3.37170 3.51958 3.68030 3.73472 3.86773 3.91400 3.98756 4.09784 4.23756 4.30895 4.38897 4.44462 4.64777 4.93480 4.98494 5.07074 5.09858 5.19913 5.29148 5.32790 5.48156 5.51154 5.67792 5.69474 5.86717 6.25355 6.28317 6.68197 6.72619 7.25727 7.31011 7.72455 8.84896 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.046810 B = 0.001743 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.024311 B =16059.816409 C =16495.962627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.285 3.715 10 N -0.724 5.724 11 C 0.692 3.308 12 O -0.648 6.648 13 N -0.729 5.729 14 C 0.113 3.887 15 C 0.115 3.885 16 H 0.117 0.883 17 O -0.562 6.562 18 C 0.029 3.971 19 O -0.316 6.316 20 C 0.148 3.852 21 C -0.220 4.220 22 C -0.046 4.046 23 C -0.195 4.195 24 C 0.120 3.880 25 F -0.144 7.144 26 C -0.208 4.208 27 H 0.269 0.731 28 H -0.013 1.013 29 H -0.013 1.013 30 H 0.404 0.596 31 H 0.411 0.589 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.390 0.610 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.156 0.844 38 H 0.167 0.833 39 H 0.154 0.846 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.396 -28.695 -0.336 29.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.378 5.378 11 C 0.392 3.608 12 O -0.531 6.531 13 N -0.386 5.386 14 C -0.012 4.012 15 C 0.055 3.945 16 H 0.134 0.866 17 O -0.370 6.370 18 C -0.047 4.047 19 O -0.229 6.229 20 C 0.102 3.898 21 C -0.239 4.239 22 C -0.064 4.064 23 C -0.214 4.214 24 C 0.100 3.900 25 F -0.123 7.123 26 C -0.227 4.227 27 H 0.078 0.922 28 H 0.005 0.995 29 H 0.005 0.995 30 H 0.239 0.761 31 H 0.247 0.753 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.240 0.760 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.174 0.826 38 H 0.184 0.816 39 H 0.172 0.828 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.858 -28.543 -0.733 29.614 hybrid contribution 0.412 0.742 0.294 0.898 sum 8.271 -27.801 -0.439 29.008 Atomic orbital electron populations 1.70128 1.08186 1.28604 1.49874 1.26039 0.95788 1.03781 0.93887 0.85205 0.77891 0.76671 0.79410 1.18759 1.21057 1.18780 1.21584 0.94307 0.90591 1.53012 0.89939 1.18408 0.88082 0.83276 0.94052 1.45314 1.10915 1.03941 1.77595 1.16267 0.85055 0.81567 0.77951 1.90841 1.16559 1.84955 1.60735 1.44727 1.09179 1.04328 1.80415 1.21756 0.96280 0.79669 1.03520 1.21940 0.92872 0.90335 0.89314 0.86570 1.86632 1.42118 1.92243 1.15997 1.23610 0.88105 0.88397 1.04585 1.86088 1.35630 1.13832 1.87376 1.18764 0.93268 0.83232 0.94542 1.21682 0.95208 0.98489 1.08487 1.21200 1.00483 0.91353 0.93374 1.21367 0.90270 1.02650 1.07064 1.17523 0.85377 0.85861 1.01191 1.91493 1.60258 1.67119 1.93411 1.20362 1.00458 0.90914 1.11002 0.92243 0.99507 0.99537 0.76065 0.75254 0.90548 0.90960 0.75961 0.88954 0.88690 0.82638 0.81560 0.82808 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.99 42.19 29.54 68.60 2.03 44.21 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.56 -30.32 9.28 25.60 0.24 -30.08 16 8 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 9 C 0.29 15.72 5.43 85.63 0.46 16.18 16 10 N -0.72 -30.85 5.55 -482.29 -2.68 -33.53 16 11 C 0.69 27.80 8.57 179.06 1.53 29.33 16 12 O -0.65 -32.14 16.34 -4.00 -0.07 -32.21 16 13 N -0.73 -19.47 5.51 -478.53 -2.64 -22.11 16 14 C 0.11 2.23 5.31 86.38 0.46 2.69 16 15 C 0.12 1.64 3.28 30.60 0.10 1.74 16 16 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 17 O -0.56 -9.16 13.25 -144.34 -1.91 -11.08 16 18 C 0.03 0.32 4.37 71.98 0.31 0.64 16 19 O -0.32 -5.27 10.10 -87.83 -0.89 -6.16 16 20 C 0.15 2.36 6.68 22.50 0.15 2.51 16 21 C -0.22 -2.50 9.04 22.37 0.20 -2.29 16 22 C -0.05 -0.43 10.04 22.25 0.22 -0.21 16 23 C -0.19 -2.32 10.02 22.33 0.22 -2.10 16 24 C 0.12 1.97 7.30 22.36 0.16 2.14 16 25 F -0.14 -2.66 17.27 44.97 0.78 -1.88 16 26 C -0.21 -3.62 9.97 22.41 0.22 -3.39 16 27 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 28 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 29 H -0.01 -0.83 8.14 -2.38 -0.02 -0.84 16 30 H 0.40 14.30 8.34 -92.71 -0.77 13.53 16 31 H 0.41 8.96 8.49 -92.71 -0.79 8.17 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.39 4.02 9.05 -74.06 -0.67 3.35 16 35 H 0.09 0.70 7.65 -2.39 -0.02 0.68 16 36 H 0.10 0.79 7.67 -2.39 -0.02 0.77 16 37 H 0.16 1.08 6.30 -2.91 -0.02 1.06 16 38 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 39 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -77.39 355.18 -1.46 -78.84 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -1.12 Total: 21.58 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 4.76 Total: 17.87 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -5.03 Total: -111.18 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -2.87 Total: -49.44 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -77.39 -1.46 -78.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785735522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.433 kcal (2) G-P(sol) polarization free energy of solvation -77.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds