Wall clock time and date at job start Fri Apr 10 2020 18:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00016 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00033 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99692 * 180.02562 * 11 10 9 14 14 O 1.45196 * 109.46959 * 180.02562 * 13 11 10 15 15 C 1.34232 * 117.00336 * 179.97438 * 14 13 11 16 16 O 1.20826 * 119.99538 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00409 * 180.02562 * 15 14 13 18 18 H 1.09006 * 109.47198 * 59.99595 * 17 15 14 19 19 C 1.53001 * 109.46827 * 300.00059 * 17 15 14 20 20 C 1.53004 * 109.46658 * 179.97438 * 19 17 15 21 21 C 1.52994 * 109.47228 * 59.99940 * 20 19 17 22 22 C 1.52993 * 109.47457 * 299.99839 * 21 20 19 23 23 H 1.08999 * 109.47845 * 180.02562 * 22 21 20 24 24 C 1.50704 * 109.46904 * 300.00112 * 22 21 20 25 25 N 1.34773 * 119.99756 * 299.99582 * 24 22 21 26 26 O 1.21280 * 119.99877 * 119.99912 * 24 22 21 27 27 C 1.52994 * 109.47198 * 179.97438 * 17 15 14 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 30 30 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 31 31 H 0.97001 * 120.00220 * 0.02562 * 10 9 7 32 32 H 1.09002 * 109.47066 * 299.99726 * 13 11 10 33 33 H 1.09000 * 109.47577 * 60.00236 * 13 11 10 34 34 H 1.09000 * 109.47252 * 299.99534 * 19 17 15 35 35 H 1.08999 * 109.47287 * 60.00048 * 19 17 15 36 36 H 1.08998 * 109.47484 * 299.99240 * 20 19 17 37 37 H 1.09006 * 109.47082 * 180.02562 * 20 19 17 38 38 H 1.09005 * 109.47221 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47280 * 60.00032 * 21 20 19 40 40 H 0.96992 * 120.00561 * 0.02562 * 25 24 22 41 41 H 0.97006 * 119.99834 * 180.02562 * 25 24 22 42 42 H 1.09001 * 109.47125 * 299.99752 * 27 17 15 43 43 H 1.09000 * 109.47280 * 60.00221 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0288 0.0006 14 8 2.0070 -7.2862 0.0005 15 6 2.7380 -8.4121 0.0004 16 8 3.9446 -8.3488 0.0009 17 6 2.0539 -9.7548 -0.0003 18 1 1.4314 -9.8450 -0.8906 19 6 1.1792 -9.8821 1.2486 20 6 0.4841 -11.2451 1.2475 21 6 1.5374 -12.3548 1.2472 22 6 2.4121 -12.2275 -0.0015 23 1 3.1623 -13.0183 -0.0020 24 6 1.5515 -12.3515 -1.2324 25 7 0.8399 -13.4759 -1.4466 26 8 1.4992 -11.4396 -2.0302 27 6 3.1076 -10.8641 -0.0009 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5571 0.8897 30 1 0.6240 -2.5568 -0.8903 31 1 3.1567 -3.4355 -0.0002 32 1 3.3597 -5.9715 -0.8894 33 1 3.3596 -5.9708 0.8906 34 1 1.8016 -9.7920 2.1388 35 1 0.4285 -9.0918 1.2485 36 1 -0.1384 -11.3349 0.3573 37 1 -0.1394 -11.3357 2.1370 38 1 1.0422 -13.3258 1.2469 39 1 2.1599 -12.2651 2.1375 40 1 0.8814 -14.2051 -0.8084 41 1 0.2862 -13.5559 -2.2390 42 1 3.7304 -10.7732 -0.8908 43 1 3.7304 -10.7741 0.8892 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787822046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:34 Heat of formation + Delta-G solvation = -185.532609 kcal Electronic energy + Delta-G solvation = -25764.967349 eV Core-core repulsion = 21809.201937 eV Total energy + Delta-G solvation = -3955.765413 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 5.59 seconds Orbital eigenvalues (eV) -41.19810 -40.13590 -38.67463 -37.32769 -36.18732 -34.24815 -34.20369 -32.38170 -31.65763 -31.22564 -29.08118 -26.68147 -24.47159 -24.03935 -22.51682 -21.96387 -20.61599 -19.88353 -19.74907 -17.89823 -17.52157 -17.26647 -16.81043 -16.54125 -16.45185 -15.63236 -15.27218 -15.09489 -14.98111 -14.65193 -14.38417 -14.13367 -14.02418 -13.41788 -12.95499 -12.86512 -12.72466 -12.53553 -12.39377 -12.28903 -11.96401 -11.71528 -11.51789 -11.28386 -10.99614 -10.98855 -10.89828 -10.59008 -10.54683 -10.32585 -10.27355 -10.10905 -9.86863 -9.41616 -9.11665 -8.75716 -7.94830 -6.17454 -4.24665 2.22672 2.30367 2.54655 3.12157 3.23650 3.24866 3.30841 3.33488 3.98043 4.24206 4.27882 4.30528 4.37289 4.61641 4.74972 4.80232 4.90842 4.97786 5.09670 5.16622 5.18615 5.21596 5.31479 5.40302 5.42504 5.51688 5.58076 5.65367 5.78336 5.86152 6.01762 6.06746 6.39370 6.48922 6.91386 7.26122 7.35421 7.48935 7.62849 7.80993 7.90033 7.94547 8.54197 8.74409 9.00889 9.41576 10.92712 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.034662 B = 0.002191 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.603592 B =12778.596091 C =12933.618473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.708 5.708 11 C 0.500 3.500 12 O -0.534 6.534 13 C 0.047 3.953 14 O -0.327 6.327 15 C 0.468 3.532 16 O -0.515 6.515 17 C -0.090 4.090 18 H 0.135 0.865 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.109 4.109 23 H 0.104 0.896 24 C 0.521 3.479 25 N -0.857 5.857 26 O -0.533 6.533 27 C -0.083 4.083 28 H 0.266 0.734 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.393 0.607 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.400 0.600 41 H 0.401 0.599 42 H 0.079 0.921 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.734 -30.319 2.577 30.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.197 1.197 6 H -0.210 1.210 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.358 5.358 11 C 0.283 3.717 12 O -0.411 6.411 13 C -0.030 4.030 14 O -0.242 6.242 15 C 0.311 3.689 16 O -0.404 6.404 17 C -0.108 4.108 18 H 0.153 0.847 19 C -0.152 4.152 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.130 4.130 23 H 0.122 0.878 24 C 0.306 3.694 25 N -0.420 5.420 26 O -0.410 6.410 27 C -0.121 4.121 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.225 0.775 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.229 0.771 41 H 0.232 0.768 42 H 0.098 0.902 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.134 -29.569 2.172 29.935 hybrid contribution 0.870 0.683 -0.070 1.108 sum 5.004 -28.886 2.102 29.391 Atomic orbital electron populations 1.69978 1.06111 1.27370 1.48746 1.24961 0.94942 0.99494 0.94649 0.86385 0.79607 0.82518 0.78224 1.20441 1.19722 1.20988 1.21214 0.93332 0.90317 1.53413 0.91771 1.19167 0.88183 0.81555 0.98004 1.46362 1.11473 1.05382 1.72569 1.19909 0.89146 0.83984 0.78685 1.90704 1.16338 1.84565 1.49502 1.22844 0.94400 0.81350 1.04429 1.86574 1.40421 1.13915 1.83272 1.23827 0.86440 0.86791 0.71807 1.90633 1.15676 1.88030 1.46077 1.21354 0.98583 0.87487 1.03415 0.84741 1.21565 0.99159 0.98429 0.96052 1.21577 0.97593 0.93870 1.02823 1.21604 0.97520 0.99213 0.96736 1.21424 0.97977 1.00300 0.93335 0.87763 1.20679 0.79651 0.81801 0.87293 1.43910 1.50277 1.19094 1.28731 1.90722 1.64572 1.38523 1.47154 1.21230 0.96408 0.90321 1.04147 0.92395 0.95292 0.95263 0.77456 0.88634 0.88653 0.91273 0.89760 0.91621 0.90726 0.91261 0.90181 0.77144 0.76809 0.90184 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.71 5.43 -5.20 -0.03 6.68 16 10 N -0.71 -15.15 5.55 -61.47 -0.34 -15.49 16 11 C 0.50 10.48 7.91 -10.98 -0.09 10.40 16 12 O -0.53 -13.51 16.50 -14.10 -0.23 -13.75 16 13 C 0.05 0.78 5.94 36.01 0.21 0.99 16 14 O -0.33 -5.64 9.66 -45.91 -0.44 -6.08 16 15 C 0.47 7.05 7.26 36.00 0.26 7.31 16 16 O -0.52 -8.41 15.73 -18.75 -0.29 -8.71 16 17 C -0.09 -1.06 2.33 -91.77 -0.21 -1.27 16 18 H 0.14 1.81 5.51 -51.93 -0.29 1.52 16 19 C -0.11 -1.11 5.14 -26.73 -0.14 -1.25 16 20 C -0.12 -0.84 5.70 -26.73 -0.15 -0.99 16 21 C -0.11 -0.52 5.35 -26.74 -0.14 -0.66 16 22 C -0.11 -0.67 3.01 -91.74 -0.28 -0.94 16 23 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 24 C 0.52 4.15 5.91 -10.99 -0.06 4.08 16 25 N -0.86 -3.50 8.77 31.22 0.27 -3.23 16 26 O -0.53 -6.80 14.49 5.56 0.08 -6.72 16 27 C -0.08 -0.78 3.67 -26.71 -0.10 -0.88 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.03 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.39 7.09 8.32 -40.82 -0.34 6.75 16 32 H 0.10 1.41 8.13 -51.93 -0.42 0.98 16 33 H 0.10 1.36 8.13 -51.93 -0.42 0.94 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 36 H 0.07 0.52 7.22 -51.93 -0.37 0.14 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.16 7.57 -51.93 -0.39 -0.23 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.40 0.39 8.25 -40.82 -0.34 0.05 16 41 H 0.40 1.50 8.93 -40.82 -0.36 1.14 16 42 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 43 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -36.86 358.32 -7.25 -44.11 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.27 Total: 3.95 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -1.14 Total: 9.99 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.67 Total: -44.14 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.89 Total: -35.25 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.86 -7.25 -44.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787822046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.421 kcal (2) G-P(sol) polarization free energy of solvation -36.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.59 seconds