Wall clock time and date at job start Fri Apr 10 2020 18:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00178 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.00069 * 180.02562 * 11 10 9 14 14 O 1.45195 * 109.46904 * 180.02562 * 13 11 10 15 15 C 1.34228 * 116.99467 * 179.97438 * 14 13 11 16 16 O 1.20824 * 120.00614 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99942 * 179.97438 * 15 14 13 18 18 H 1.08997 * 109.47239 * 300.00567 * 17 15 14 19 19 C 1.53003 * 109.47241 * 60.00038 * 17 15 14 20 20 C 1.52995 * 109.47468 * 179.97438 * 19 17 15 21 21 C 1.53001 * 109.47238 * 300.00128 * 20 19 17 22 22 C 1.53000 * 109.47151 * 59.99915 * 21 20 19 23 23 H 1.09005 * 109.47067 * 59.99852 * 22 21 20 24 24 C 1.50693 * 109.47444 * 180.02562 * 22 21 20 25 25 N 1.34782 * 119.99681 * 300.00034 * 24 22 21 26 26 O 1.21278 * 120.00500 * 120.00031 * 24 22 21 27 27 C 1.53001 * 109.47282 * 180.02562 * 17 15 14 28 28 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 30 30 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 31 31 H 0.96998 * 120.00140 * 0.02562 * 10 9 7 32 32 H 1.09000 * 109.46736 * 300.00153 * 13 11 10 33 33 H 1.08997 * 109.46873 * 59.99459 * 13 11 10 34 34 H 1.08999 * 109.47033 * 300.00259 * 19 17 15 35 35 H 1.09005 * 109.46874 * 60.00126 * 19 17 15 36 36 H 1.09002 * 109.46982 * 179.97438 * 20 19 17 37 37 H 1.09005 * 109.46901 * 60.00228 * 20 19 17 38 38 H 1.08997 * 109.47402 * 300.00163 * 21 20 19 39 39 H 1.08999 * 109.47166 * 179.97438 * 21 20 19 40 40 H 0.96994 * 119.99963 * 359.97438 * 25 24 22 41 41 H 0.97000 * 119.99662 * 179.97438 * 25 24 22 42 42 H 1.09005 * 109.47256 * 300.00133 * 27 17 15 43 43 H 1.09002 * 109.47313 * 60.00233 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7332 -6.0288 0.0016 14 8 2.0072 -7.2862 0.0015 15 6 2.7383 -8.4119 0.0015 16 8 3.9449 -8.3487 0.0010 17 6 2.0542 -9.7547 0.0019 18 1 1.4316 -9.8450 0.8920 19 6 1.1795 -9.8819 -1.2470 20 6 0.4855 -11.2454 -1.2469 21 6 1.5396 -12.3543 -1.2474 22 6 2.4142 -12.2271 0.0015 23 1 1.7917 -12.3179 0.8918 24 6 3.4529 -13.3189 0.0008 25 7 3.0716 -14.6117 0.0005 26 8 4.6318 -13.0344 0.0005 27 6 3.1079 -10.8640 0.0024 28 1 -0.4850 -0.8401 -0.0004 29 1 0.6241 -2.5566 0.8903 30 1 0.6247 -2.5571 -0.8897 31 1 3.1568 -3.4353 0.0009 32 1 3.3599 -5.9714 -0.8883 33 1 3.3598 -5.9706 0.8916 34 1 0.4288 -9.0916 -1.2469 35 1 1.8021 -9.7916 -2.1372 36 1 -0.1379 -11.3358 -2.1365 37 1 -0.1370 -11.3361 -0.3567 38 1 2.1621 -12.2636 -2.1375 39 1 1.0451 -13.3257 -1.2469 40 1 2.1287 -14.8393 0.0012 41 1 3.7402 -15.3145 -0.0003 42 1 3.7308 -10.7738 -0.8876 43 1 3.7306 -10.7732 0.8924 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787822055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:56 Heat of formation + Delta-G solvation = -223.822995 kcal Electronic energy + Delta-G solvation = -25352.180554 eV Core-core repulsion = 21394.754745 eV Total energy + Delta-G solvation = -3957.425809 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 3.99 seconds Orbital eigenvalues (eV) -42.07879 -41.01199 -40.46480 -38.53841 -37.54465 -36.47332 -34.75733 -34.56270 -32.49468 -31.89258 -30.63648 -28.19241 -25.38218 -24.99579 -24.53067 -22.27964 -21.76467 -21.41634 -20.67944 -19.63415 -19.06498 -18.33080 -18.04550 -17.88943 -17.54941 -17.17445 -16.50764 -16.42730 -16.09788 -15.68609 -15.59063 -15.12203 -14.97487 -14.73946 -14.52448 -14.44216 -14.24438 -13.80396 -13.76498 -13.48293 -13.33373 -13.14068 -12.57356 -12.48039 -12.27184 -11.99018 -11.89886 -11.89659 -11.73412 -11.48479 -11.24325 -11.11999 -10.89938 -10.81163 -10.79553 -10.62074 -10.09405 -8.81158 -6.57138 1.01191 1.16699 1.41649 1.56298 1.64524 1.65052 1.82459 2.35156 2.55640 2.63565 3.06686 3.39094 3.56035 3.62066 3.67836 3.81922 3.94723 3.95340 4.05384 4.17412 4.24738 4.34922 4.39837 4.49385 4.63339 4.72856 4.91531 4.94519 5.03780 5.09483 5.13485 5.17056 5.25976 5.28627 5.31770 5.45340 5.49405 5.92504 6.04491 6.28826 6.49205 6.51647 6.64403 7.09696 7.30690 7.38297 8.58463 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.040559 B = 0.002037 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.180059 B =13744.758219 C =14278.435461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.031 4.031 3 Si 1.132 2.868 4 H -0.271 1.271 5 H -0.262 1.262 6 H -0.285 1.285 7 C -0.632 4.632 8 H 0.077 0.923 9 C 0.253 3.747 10 N -0.696 5.696 11 C 0.502 3.498 12 O -0.579 6.579 13 C 0.058 3.942 14 O -0.343 6.343 15 C 0.462 3.538 16 O -0.531 6.531 17 C -0.069 4.069 18 H 0.137 0.863 19 C -0.117 4.117 20 C -0.109 4.109 21 C -0.108 4.108 22 C -0.100 4.100 23 H 0.134 0.866 24 C 0.517 3.483 25 N -0.834 5.834 26 O -0.598 6.598 27 C -0.080 4.080 28 H 0.255 0.745 29 H -0.010 1.010 30 H -0.010 1.010 31 H 0.413 0.587 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.420 0.580 41 H 0.406 0.594 42 H 0.055 0.945 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 -30.917 -0.920 31.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.230 4.230 3 Si 0.952 3.048 4 H -0.196 1.196 5 H -0.186 1.186 6 H -0.210 1.210 7 C -0.669 4.669 8 H 0.095 0.905 9 C 0.130 3.870 10 N -0.348 5.348 11 C 0.288 3.712 12 O -0.460 6.460 13 C -0.019 4.019 14 O -0.258 6.258 15 C 0.307 3.693 16 O -0.420 6.420 17 C -0.088 4.088 18 H 0.155 0.845 19 C -0.154 4.154 20 C -0.146 4.146 21 C -0.146 4.146 22 C -0.121 4.121 23 H 0.151 0.849 24 C 0.303 3.697 25 N -0.398 5.398 26 O -0.479 6.479 27 C -0.119 4.119 28 H 0.065 0.935 29 H 0.008 0.992 30 H 0.007 0.993 31 H 0.249 0.751 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.123 0.877 40 H 0.252 0.748 41 H 0.237 0.763 42 H 0.073 0.927 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.131 -29.048 -0.929 29.231 hybrid contribution 0.543 -1.584 0.037 1.675 sum 3.674 -30.633 -0.892 30.865 Atomic orbital electron populations 1.70879 1.08213 1.30049 1.47265 1.27619 0.96370 1.07089 0.91943 0.82753 0.74131 0.70037 0.77928 1.19635 1.18590 1.21035 1.22452 0.95685 0.91631 1.57178 0.90470 1.18766 0.89237 0.84976 0.93985 1.45904 1.11591 1.04559 1.72726 1.20679 0.89343 0.84569 0.76600 1.90674 1.18685 1.85263 1.51334 1.22692 0.92623 0.79654 1.06897 1.86567 1.41199 1.14318 1.83729 1.24594 0.86408 0.87177 0.71148 1.90677 1.16758 1.88100 1.46495 1.21224 0.98090 0.85300 1.04215 0.84539 1.21625 0.98482 1.00576 0.94754 1.21520 0.97296 0.91104 1.04656 1.21613 0.96658 1.01119 0.95181 1.21329 0.95997 0.91240 1.03521 0.84861 1.20938 0.89300 0.85427 0.74032 1.43724 1.13468 1.06411 1.76223 1.90769 1.21240 1.84055 1.51805 1.21124 0.95807 0.91840 1.03082 0.93539 0.99245 0.99252 0.75077 0.86201 0.86067 0.90770 0.92124 0.89499 0.89185 0.92356 0.87712 0.74839 0.76305 0.92659 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.65 21.45 0.29 -56.66 16 2 C -0.03 -1.75 5.46 84.65 0.46 -1.29 16 3 Si 1.13 47.73 29.90 68.60 2.05 49.78 16 4 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.63 -34.34 9.28 25.60 0.24 -34.10 16 8 H 0.08 3.84 7.60 -2.91 -0.02 3.82 16 9 C 0.25 13.58 4.74 85.64 0.41 13.99 16 10 N -0.70 -29.14 5.55 -466.77 -2.59 -31.72 16 11 C 0.50 20.16 7.91 87.66 0.69 20.86 16 12 O -0.58 -28.56 16.50 15.77 0.26 -28.30 16 13 C 0.06 1.73 5.94 71.24 0.42 2.16 16 14 O -0.34 -10.44 9.66 -45.05 -0.44 -10.88 16 15 C 0.46 12.26 7.26 71.24 0.52 12.78 16 16 O -0.53 -16.71 15.73 21.97 0.35 -16.36 16 17 C -0.07 -1.23 2.63 -11.54 -0.03 -1.26 16 18 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 19 C -0.12 -1.74 5.14 30.59 0.16 -1.58 16 20 C -0.11 -0.78 5.92 30.59 0.18 -0.60 16 21 C -0.11 -0.67 5.10 30.59 0.16 -0.51 16 22 C -0.10 -1.02 2.52 -11.56 -0.03 -1.05 16 23 H 0.13 0.59 8.14 -2.38 -0.02 0.57 16 24 C 0.52 7.59 7.43 87.65 0.65 8.24 16 25 N -0.83 -4.38 8.77 -173.53 -1.52 -5.91 16 26 O -0.60 -15.97 16.82 -3.02 -0.05 -16.02 16 27 C -0.08 -1.49 3.06 30.58 0.09 -1.40 16 28 H 0.26 16.19 7.22 -92.71 -0.67 15.52 16 29 H -0.01 -0.61 8.01 -2.39 -0.02 -0.63 16 30 H -0.01 -0.61 8.01 -2.38 -0.02 -0.63 16 31 H 0.41 14.28 8.32 -92.71 -0.77 13.51 16 32 H 0.12 3.07 8.13 -2.39 -0.02 3.05 16 33 H 0.12 3.08 8.13 -2.39 -0.02 3.06 16 34 H 0.07 1.31 8.11 -2.39 -0.02 1.29 16 35 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 38 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.10 -0.02 7.56 -2.39 -0.02 -0.03 16 40 H 0.42 -0.92 8.25 -92.71 -0.76 -1.69 16 41 H 0.41 1.88 8.93 -92.71 -0.83 1.05 16 42 H 0.05 1.31 8.05 -2.38 -0.02 1.29 16 43 H 0.06 1.36 8.06 -2.39 -0.02 1.34 16 Total: -1.00 -85.82 363.52 1.07 -84.76 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -1.20 Total: 15.06 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 3.92 Total: 16.24 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -3.82 Total: -94.29 kcal Atomic # 8 Polarization: -71.67 SS G_CDS: 0.12 Total: -71.55 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.05 Total: 49.78 kcal Total: -85.82 1.07 -84.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787822055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.066 kcal (2) G-P(sol) polarization free energy of solvation -85.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.00 seconds