Wall clock time and date at job start Fri Apr 10 2020 18:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99891 * 2 1 4 4 H 1.48500 * 109.46770 * 269.99300 * 3 2 1 5 5 H 1.48492 * 109.47455 * 29.99464 * 3 2 1 6 6 H 1.48502 * 109.47068 * 150.00028 * 3 2 1 7 7 C 1.37877 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00415 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99641 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46989 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47329 * 180.02562 * 10 9 7 12 12 O 1.20825 * 119.99861 * 359.97438 * 11 10 9 13 13 O 1.34229 * 120.00090 * 180.02562 * 11 10 9 14 14 C 1.45204 * 116.99723 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.46695 * 179.97438 * 14 13 11 16 16 O 1.21277 * 120.00023 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00003 * 180.02562 * 15 14 13 18 18 C 1.46491 * 120.00091 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46957 * 179.97438 * 18 17 15 20 20 O 1.21283 * 120.00262 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99928 * 179.72354 * 19 18 17 22 22 C 1.47021 * 125.64880 * 359.97385 * 21 19 18 23 23 C 1.54315 * 107.27662 * 180.96527 * 22 21 19 24 24 C 1.55159 * 102.86487 * 22.52300 * 23 22 21 25 25 C 1.47428 * 125.65051 * 180.27344 * 21 19 18 26 26 H 0.97003 * 120.00063 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47174 * 60.00521 * 9 7 2 28 28 H 1.08998 * 109.47223 * 300.00177 * 9 7 2 29 29 H 1.09003 * 109.47115 * 59.99849 * 10 9 7 30 30 H 1.08998 * 109.47189 * 300.00083 * 10 9 7 31 31 H 1.08998 * 109.46790 * 60.00394 * 14 13 11 32 32 H 1.08994 * 109.47172 * 300.00012 * 14 13 11 33 33 H 0.97003 * 119.99349 * 0.02562 * 17 15 14 34 34 H 1.09004 * 109.47166 * 60.00164 * 18 17 15 35 35 H 1.08994 * 109.47507 * 299.99870 * 18 17 15 36 36 H 1.08998 * 109.88109 * 300.51046 * 22 21 19 37 37 H 1.09001 * 109.88624 * 61.67549 * 22 21 19 38 38 H 1.09000 * 110.92562 * 264.10677 * 23 22 21 39 39 H 1.09003 * 110.59336 * 140.78334 * 23 22 21 40 40 H 1.08994 * 111.00670 * 206.22889 * 24 23 22 41 41 H 1.09000 * 110.99915 * 82.37681 * 24 23 22 42 42 H 1.08994 * 110.37091 * 274.68026 * 25 21 19 43 43 H 1.09002 * 110.36001 * 36.89286 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5285 -2.6366 0.0022 12 8 6.1327 -1.5902 0.0026 13 8 6.1997 -3.7991 0.0018 14 6 7.6497 -3.7231 0.0025 15 6 8.2256 -5.1157 0.0025 16 8 7.4868 -6.0774 0.0016 17 7 9.5618 -5.2923 0.0036 18 6 10.1217 -6.6460 0.0031 19 6 11.6266 -6.5672 0.0039 20 8 12.1773 -5.4865 0.0053 21 7 12.3607 -7.6975 0.0092 22 6 11.8254 -9.0668 0.0151 23 6 13.0307 -10.0299 0.0447 24 6 14.1634 -9.1478 0.6331 25 6 13.8334 -7.7657 0.0163 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8752 -0.6804 -0.8888 29 1 3.6585 -3.1502 -0.8893 30 1 3.6579 -3.1506 0.8907 31 1 7.9852 -3.1915 0.8929 32 1 7.9860 -3.1904 -0.8870 33 1 10.1527 -4.5230 0.0047 34 1 9.7866 -7.1775 -0.8877 35 1 9.7850 -7.1789 0.8923 36 1 11.2054 -9.2186 0.8987 37 1 11.2377 -9.2391 -0.8866 38 1 13.2858 -10.3653 -0.9605 39 1 12.8263 -10.8800 0.6957 40 1 15.1419 -9.4984 0.3051 41 1 14.1068 -9.1137 1.7211 42 1 14.2210 -7.7016 -1.0003 43 1 14.2471 -6.9658 0.6305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:48 Heat of formation + Delta-G solvation = -158.569114 kcal Electronic energy + Delta-G solvation = -24584.433672 eV Core-core repulsion = 20629.837484 eV Total energy + Delta-G solvation = -3954.596188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = -0.19 seconds Orbital eigenvalues (eV) -40.89168 -40.31939 -39.39785 -37.99477 -36.22213 -34.81088 -33.62162 -32.53040 -31.47371 -30.24704 -29.52208 -27.47328 -26.05558 -23.98184 -22.01667 -21.81184 -20.93145 -20.07010 -19.85151 -18.21312 -17.63829 -17.35693 -17.10987 -16.73161 -16.64549 -16.13712 -15.87638 -15.51649 -14.97252 -14.68520 -14.19689 -14.11577 -14.06056 -13.82833 -13.65442 -13.30891 -13.03158 -12.79810 -12.74500 -12.38390 -12.34047 -12.03890 -11.90345 -11.46422 -11.43808 -11.01804 -10.66096 -10.56194 -10.33397 -10.25803 -10.14313 -9.93670 -9.71502 -9.60450 -9.32588 -9.24713 -8.54454 -6.05799 -4.05721 1.94693 1.97280 2.27695 2.51385 2.63035 3.35018 3.35669 3.42334 3.51075 3.67633 3.87112 4.12889 4.22280 4.40763 4.47285 4.56264 4.68761 4.76700 4.83342 4.94138 4.97260 4.98321 5.06674 5.17292 5.19740 5.27889 5.28811 5.34393 5.45414 5.59714 5.84298 6.01448 6.02758 6.42478 6.70995 6.78015 7.04539 7.24118 7.31608 7.44087 7.71447 7.82677 8.13643 8.48239 8.96882 9.55757 11.06758 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.048841 B = 0.001784 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.147179 B =15692.494469 C =16197.194642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.094 4.094 11 C 0.460 3.540 12 O -0.510 6.510 13 O -0.339 6.339 14 C 0.047 3.953 15 C 0.521 3.479 16 O -0.514 6.514 17 N -0.721 5.721 18 C 0.108 3.892 19 C 0.526 3.474 20 O -0.534 6.534 21 N -0.617 5.617 22 C 0.092 3.908 23 C -0.132 4.132 24 C -0.135 4.135 25 C 0.104 3.896 26 H 0.264 0.736 27 H 0.026 0.974 28 H 0.022 0.978 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.414 0.586 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.886 -21.812 0.339 37.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.131 4.131 11 C 0.304 3.696 12 O -0.397 6.397 13 O -0.256 6.256 14 C -0.031 4.031 15 C 0.307 3.693 16 O -0.388 6.388 17 N -0.380 5.380 18 C -0.019 4.019 19 C 0.314 3.686 20 O -0.411 6.411 21 N -0.353 5.353 22 C -0.030 4.030 23 C -0.170 4.170 24 C -0.173 4.173 25 C -0.018 4.018 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.252 0.748 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 30.621 -21.428 0.337 37.376 hybrid contribution 0.850 1.233 -0.050 1.499 sum 31.471 -20.195 0.287 37.394 Atomic orbital electron populations 1.69906 1.06267 1.27052 1.50612 1.24952 0.94721 0.99173 0.94236 0.86802 0.80579 0.83435 0.78763 1.20184 1.21322 1.18597 1.21033 0.88809 0.94854 1.51819 0.90574 1.19500 0.96968 0.89536 0.97966 1.21572 0.82777 1.03572 1.05197 1.24917 0.92824 0.80599 0.71267 1.90629 1.70495 1.32991 1.45616 1.86650 1.18079 1.36129 1.84728 1.22475 0.80981 0.94370 1.05226 1.20181 0.81685 0.91113 0.76336 1.90762 1.58757 1.41971 1.47267 1.45527 1.06821 1.08620 1.76997 1.20992 0.89535 0.86199 1.05145 1.20197 0.89225 0.83034 0.76133 1.90733 1.73026 1.27268 1.50058 1.48416 1.07571 1.05892 1.73393 1.22196 0.97345 0.80851 1.02642 1.22648 0.94118 0.97719 1.02507 1.22812 0.99278 0.94060 1.01137 1.22287 0.79673 0.98367 1.01458 0.92607 0.95543 0.95997 0.88050 0.88036 0.88075 0.88062 0.74797 0.88077 0.88066 0.90636 0.90644 0.90183 0.89559 0.89456 0.90352 0.91082 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 7 C -0.53 -14.98 9.66 -34.44 -0.33 -15.31 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C 0.00 -0.05 3.33 -27.88 -0.09 -0.15 16 10 C -0.09 -1.86 5.75 -27.88 -0.16 -2.02 16 11 C 0.46 8.66 7.96 36.01 0.29 8.95 16 12 O -0.51 -10.65 15.73 -18.75 -0.29 -10.95 16 13 O -0.34 -5.70 9.75 -45.90 -0.45 -6.14 16 14 C 0.05 0.61 5.94 36.01 0.21 0.82 16 15 C 0.52 6.49 7.91 -10.98 -0.09 6.41 16 16 O -0.51 -8.20 16.50 -14.10 -0.23 -8.44 16 17 N -0.72 -6.88 5.53 -61.48 -0.34 -7.22 16 18 C 0.11 0.84 5.35 -5.20 -0.03 0.82 16 19 C 0.53 4.43 7.92 -10.98 -0.09 4.34 16 20 O -0.53 -6.22 15.92 5.55 0.09 -6.13 16 21 N -0.62 -3.74 3.33 -170.53 -0.57 -4.31 16 22 C 0.09 0.30 6.48 -3.07 -0.02 0.28 16 23 C -0.13 -0.24 6.95 -24.90 -0.17 -0.41 16 24 C -0.13 -0.32 7.08 -24.58 -0.17 -0.50 16 25 C 0.10 0.51 6.91 -2.53 -0.02 0.50 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.03 0.66 7.16 -51.93 -0.37 0.29 16 28 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 29 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 30 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 31 H 0.10 1.14 8.13 -51.93 -0.42 0.72 16 32 H 0.10 1.14 8.13 -51.93 -0.42 0.72 16 33 H 0.41 3.61 7.44 -40.82 -0.30 3.31 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 40 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.49 8.03 -51.93 -0.42 0.07 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -37.09 367.94 -7.48 -44.57 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -6.56 Total: -3.25 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -0.77 Total: 5.71 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: -0.13 Total: -38.48 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.89 Total: -31.66 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.09 -7.48 -44.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.004 kcal (2) G-P(sol) polarization free energy of solvation -37.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.19 seconds