Wall clock time and date at job start Fri Apr 10 2020 18:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99891 * 2 1 4 4 H 1.48500 * 109.46770 * 269.99300 * 3 2 1 5 5 H 1.48492 * 109.47455 * 29.99464 * 3 2 1 6 6 H 1.48502 * 109.47068 * 150.00028 * 3 2 1 7 7 C 1.37877 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00415 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99641 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46989 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47329 * 180.02562 * 10 9 7 12 12 O 1.20825 * 119.99861 * 359.97438 * 11 10 9 13 13 O 1.34229 * 120.00090 * 180.02562 * 11 10 9 14 14 C 1.45204 * 116.99723 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.46695 * 179.97438 * 14 13 11 16 16 O 1.21277 * 120.00023 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00003 * 180.02562 * 15 14 13 18 18 C 1.46491 * 120.00091 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46957 * 179.97438 * 18 17 15 20 20 O 1.21283 * 120.00262 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99928 * 179.72354 * 19 18 17 22 22 C 1.47021 * 125.64880 * 359.97385 * 21 19 18 23 23 C 1.54315 * 107.27662 * 180.96527 * 22 21 19 24 24 C 1.55159 * 102.86487 * 22.52300 * 23 22 21 25 25 C 1.47428 * 125.65051 * 180.27344 * 21 19 18 26 26 H 0.97003 * 120.00063 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47174 * 60.00521 * 9 7 2 28 28 H 1.08998 * 109.47223 * 300.00177 * 9 7 2 29 29 H 1.09003 * 109.47115 * 59.99849 * 10 9 7 30 30 H 1.08998 * 109.47189 * 300.00083 * 10 9 7 31 31 H 1.08998 * 109.46790 * 60.00394 * 14 13 11 32 32 H 1.08994 * 109.47172 * 300.00012 * 14 13 11 33 33 H 0.97003 * 119.99349 * 0.02562 * 17 15 14 34 34 H 1.09004 * 109.47166 * 60.00164 * 18 17 15 35 35 H 1.08994 * 109.47507 * 299.99870 * 18 17 15 36 36 H 1.08998 * 109.88109 * 300.51046 * 22 21 19 37 37 H 1.09001 * 109.88624 * 61.67549 * 22 21 19 38 38 H 1.09000 * 110.92562 * 264.10677 * 23 22 21 39 39 H 1.09003 * 110.59336 * 140.78334 * 23 22 21 40 40 H 1.08994 * 111.00670 * 206.22889 * 24 23 22 41 41 H 1.09000 * 110.99915 * 82.37681 * 24 23 22 42 42 H 1.08994 * 110.37091 * 274.68026 * 25 21 19 43 43 H 1.09002 * 110.36001 * 36.89286 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5285 -2.6366 0.0022 12 8 6.1327 -1.5902 0.0026 13 8 6.1997 -3.7991 0.0018 14 6 7.6497 -3.7231 0.0025 15 6 8.2256 -5.1157 0.0025 16 8 7.4868 -6.0774 0.0016 17 7 9.5618 -5.2923 0.0036 18 6 10.1217 -6.6460 0.0031 19 6 11.6266 -6.5672 0.0039 20 8 12.1773 -5.4865 0.0053 21 7 12.3607 -7.6975 0.0092 22 6 11.8254 -9.0668 0.0151 23 6 13.0307 -10.0299 0.0447 24 6 14.1634 -9.1478 0.6331 25 6 13.8334 -7.7657 0.0163 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8752 -0.6804 -0.8888 29 1 3.6585 -3.1502 -0.8893 30 1 3.6579 -3.1506 0.8907 31 1 7.9852 -3.1915 0.8929 32 1 7.9860 -3.1904 -0.8870 33 1 10.1527 -4.5230 0.0047 34 1 9.7866 -7.1775 -0.8877 35 1 9.7850 -7.1789 0.8923 36 1 11.2054 -9.2186 0.8987 37 1 11.2377 -9.2391 -0.8866 38 1 13.2858 -10.3653 -0.9605 39 1 12.8263 -10.8800 0.6957 40 1 15.1419 -9.4984 0.3051 41 1 14.1068 -9.1137 1.7211 42 1 14.2210 -7.7016 -1.0003 43 1 14.2471 -6.9658 0.6305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:46 Heat of formation + Delta-G solvation = -184.273763 kcal Electronic energy + Delta-G solvation = -24585.548309 eV Core-core repulsion = 20629.837484 eV Total energy + Delta-G solvation = -3955.710825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81629 -41.35828 -40.39329 -38.52580 -37.61633 -35.70076 -35.62609 -33.46633 -32.97960 -31.06600 -30.03203 -28.65689 -27.52908 -24.48115 -23.69989 -22.14255 -21.83488 -21.47991 -20.62423 -19.43866 -18.90532 -18.49546 -18.01068 -17.88532 -17.62482 -17.03649 -16.87888 -16.54776 -16.25296 -15.94019 -15.52772 -15.07968 -14.81222 -14.65854 -14.46304 -14.36226 -14.10262 -13.89263 -13.77251 -13.52357 -13.30852 -13.25319 -12.92019 -12.24802 -12.21814 -12.15974 -12.02790 -11.91027 -11.78558 -11.60831 -11.56260 -11.41484 -11.25681 -11.17469 -10.77593 -10.44062 -9.80806 -8.30479 -6.35046 1.06903 1.14484 1.28118 1.34563 1.36183 1.38174 1.51740 1.77330 2.33036 2.35955 3.04936 3.21712 3.47100 3.65212 3.78473 3.85089 3.97922 4.03442 4.06450 4.20022 4.23054 4.31059 4.33461 4.39489 4.46231 4.63958 4.82539 4.82885 4.91686 4.96950 5.01534 5.12402 5.18389 5.20849 5.30969 5.35192 5.37541 5.59094 6.17849 6.22597 6.27986 6.66385 6.75320 6.83186 6.92385 7.30000 8.85127 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.048841 B = 0.001784 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.147179 B =15692.494469 C =16197.194642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.255 1.255 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.002 3.998 10 C -0.092 4.092 11 C 0.474 3.526 12 O -0.532 6.532 13 O -0.344 6.344 14 C 0.039 3.961 15 C 0.529 3.471 16 O -0.553 6.553 17 N -0.708 5.708 18 C 0.109 3.891 19 C 0.524 3.476 20 O -0.574 6.574 21 N -0.615 5.615 22 C 0.083 3.917 23 C -0.126 4.126 24 C -0.127 4.127 25 C 0.096 3.904 26 H 0.268 0.732 27 H 0.021 0.979 28 H 0.019 0.981 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.419 0.581 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.012 -22.760 0.303 40.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.179 1.179 7 C -0.572 4.572 8 H 0.068 0.932 9 C -0.035 4.035 10 C -0.129 4.129 11 C 0.318 3.682 12 O -0.421 6.421 13 O -0.260 6.260 14 C -0.037 4.037 15 C 0.315 3.685 16 O -0.430 6.430 17 N -0.365 5.365 18 C -0.018 4.018 19 C 0.312 3.688 20 O -0.455 6.455 21 N -0.349 5.349 22 C -0.039 4.039 23 C -0.164 4.164 24 C -0.165 4.165 25 C -0.026 4.026 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.258 0.742 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 32.801 -22.435 0.301 39.741 hybrid contribution 0.264 1.376 -0.042 1.402 sum 33.065 -21.059 0.259 39.203 Atomic orbital electron populations 1.70030 1.07932 1.28205 1.52145 1.25823 0.95514 1.02986 0.94064 0.85792 0.79381 0.79110 0.79234 1.19257 1.20530 1.17933 1.21351 0.91000 0.93900 1.50910 0.93225 1.19339 0.94306 0.92512 0.97383 1.21358 0.84197 1.00854 1.06502 1.24367 0.92284 0.80707 0.70794 1.90622 1.70868 1.33800 1.46854 1.86582 1.20470 1.34767 1.84168 1.22827 0.78580 0.95241 1.07091 1.20050 0.82209 0.90380 0.75898 1.90752 1.59745 1.42886 1.49602 1.45437 1.05902 1.09803 1.75401 1.21130 0.89169 0.85261 1.06220 1.20262 0.89428 0.83115 0.75959 1.90712 1.73664 1.28772 1.52330 1.48547 1.08169 1.06439 1.71709 1.22469 0.98313 0.79554 1.03525 1.22672 0.92900 0.97536 1.03281 1.22796 1.00363 0.92407 1.00942 1.22436 0.79032 0.99539 1.01584 0.92315 0.96110 0.96238 0.86849 0.86880 0.86266 0.86236 0.74157 0.86955 0.86949 0.89782 0.89750 0.89449 0.88069 0.87894 0.90446 0.90864 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 2 C 0.01 0.82 5.47 84.65 0.46 1.29 16 3 Si 0.94 45.55 27.47 68.60 1.88 47.44 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.26 -12.02 6.54 99.48 0.65 -11.37 16 7 C -0.53 -30.52 9.66 25.60 0.25 -30.27 16 8 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 9 C 0.00 0.11 3.33 29.85 0.10 0.21 16 10 C -0.09 -3.55 5.75 29.85 0.17 -3.38 16 11 C 0.47 17.09 7.96 71.24 0.57 17.66 16 12 O -0.53 -21.30 15.73 21.97 0.35 -20.95 16 13 O -0.34 -10.99 9.75 -45.06 -0.44 -11.43 16 14 C 0.04 0.94 5.94 71.24 0.42 1.36 16 15 C 0.53 12.42 7.91 87.66 0.69 13.11 16 16 O -0.55 -17.06 16.50 15.78 0.26 -16.79 16 17 N -0.71 -12.56 5.53 -466.81 -2.58 -15.14 16 18 C 0.11 1.55 5.35 85.64 0.46 2.00 16 19 C 0.52 8.43 7.92 87.66 0.69 9.12 16 20 O -0.57 -13.34 15.92 -3.04 -0.05 -13.38 16 21 N -0.62 -6.76 3.33 -811.81 -2.70 -9.46 16 22 C 0.08 0.38 6.48 86.73 0.56 0.94 16 23 C -0.13 -0.14 6.95 31.78 0.22 0.08 16 24 C -0.13 -0.37 7.08 31.99 0.23 -0.14 16 25 C 0.10 0.87 6.91 86.85 0.60 1.47 16 26 H 0.27 15.59 8.31 -92.71 -0.77 14.81 16 27 H 0.02 1.02 7.16 -2.39 -0.02 1.00 16 28 H 0.02 0.94 7.53 -2.39 -0.02 0.92 16 29 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 30 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 31 H 0.12 2.44 8.13 -2.39 -0.02 2.42 16 32 H 0.12 2.44 8.13 -2.39 -0.02 2.42 16 33 H 0.42 6.82 7.44 -92.71 -0.69 6.13 16 34 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.10 -0.14 8.14 -2.39 -0.02 -0.15 16 40 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.06 0.80 8.03 -2.39 -0.02 0.78 16 Total: -1.00 -79.51 367.94 2.72 -76.79 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.27 Total: 7.96 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 5.43 Total: 13.45 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -4.98 Total: -83.08 kcal Atomic # 8 Polarization: -62.67 SS G_CDS: 0.12 Total: -62.56 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.44 kcal Total: -79.51 2.72 -76.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.488 kcal (2) G-P(sol) polarization free energy of solvation -79.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds