Wall clock time and date at job start Fri Apr 10 2020 18:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35643 * 124.93025 * 2 1 4 4 C 1.35466 * 107.12863 * 179.69877 * 3 2 1 5 5 Cl 1.73602 * 127.23768 * 180.24448 * 4 3 2 6 6 C 1.41542 * 105.52647 * 0.26143 * 4 3 2 7 7 C 1.47663 * 126.46325 * 179.97438 * 6 4 3 8 8 O 1.21569 * 120.00019 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00000 * 180.02562 * 7 6 4 10 10 C 1.46503 * 120.00368 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47396 * 180.02562 * 10 9 7 12 12 H 1.09000 * 112.85018 * 316.19159 * 11 10 9 13 13 C 1.53778 * 113.61644 * 87.50308 * 11 10 9 14 14 C 1.53773 * 87.08598 * 139.97954 * 13 11 10 15 15 H 1.08997 * 113.69517 * 220.01040 * 14 13 11 16 16 N 1.46507 * 113.61649 * 89.11281 * 14 13 11 17 17 C 1.36937 * 119.99747 * 107.50187 * 16 14 13 18 18 H 1.08002 * 120.00196 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99848 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99878 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99796 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47408 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47048 * 120.00284 * 21 19 17 24 24 H 1.48503 * 109.47032 * 239.99752 * 21 19 17 25 25 C 1.53781 * 113.61241 * 184.99993 * 11 10 9 26 26 N 1.28472 * 124.93717 * 180.17275 * 2 1 3 27 27 H 1.09002 * 109.47196 * 90.00027 * 1 2 3 28 28 H 1.09001 * 109.47311 * 209.99613 * 1 2 3 29 29 H 1.08991 * 109.47698 * 330.00144 * 1 2 3 30 30 H 1.08002 * 126.43840 * 359.96657 * 3 2 1 31 31 H 0.97005 * 120.00100 * 0.02562 * 9 7 6 32 32 H 1.09006 * 109.46347 * 300.00267 * 10 9 7 33 33 H 1.09001 * 109.47113 * 59.99643 * 10 9 7 34 34 H 1.09002 * 113.61339 * 254.52989 * 13 11 10 35 35 H 1.09004 * 113.61406 * 25.42505 * 13 11 10 36 36 H 0.96995 * 119.99672 * 287.51319 * 16 14 13 37 37 H 0.97000 * 119.99877 * 179.97438 * 20 19 17 38 38 H 1.08998 * 113.61361 * 334.56292 * 25 11 10 39 39 H 1.09002 * 113.61636 * 105.39035 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2416 1.1121 0.0000 4 6 3.5314 0.6979 0.0068 5 17 4.9541 1.6927 0.0158 6 6 3.4753 -0.7164 0.0046 7 6 4.6270 -1.6404 0.0094 8 8 5.7600 -1.1995 0.0164 9 7 4.4223 -2.9725 0.0060 10 6 5.5650 -3.8893 0.0113 11 6 5.0602 -5.3336 0.0053 12 1 4.2319 -5.4953 0.6952 13 6 4.8078 -5.8921 -1.4050 14 6 5.4131 -7.2141 -0.9046 15 1 6.0578 -7.7045 -1.6340 16 7 4.4286 -8.1237 -0.3131 17 6 4.0474 -9.2527 -0.9878 18 1 4.4729 -9.4729 -1.9557 19 6 3.1143 -10.1142 -0.4276 20 7 2.5962 -9.8461 0.7523 21 14 2.5949 -11.6547 -1.3476 22 1 3.3188 -11.7259 -2.6422 23 1 2.9201 -12.8520 -0.5315 24 1 1.1322 -11.6106 -1.6007 25 6 6.1812 -6.3785 0.1331 26 7 2.2007 -1.0532 -0.0032 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5137 30 1 1.8966 2.1355 -0.0005 31 1 3.5183 -3.3243 0.0000 32 1 6.1752 -3.7143 -0.8748 33 1 6.1646 -3.7173 0.9052 34 1 3.7512 -5.9656 -1.6629 35 1 5.4007 -5.4059 -2.1798 36 1 4.0467 -7.9260 0.5563 37 1 1.9438 -10.4479 1.1436 38 1 7.1496 -6.0253 -0.2212 39 1 6.2344 -6.8437 1.1174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086374864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:06 Heat of formation + Delta-G solvation = 72.274174 kcal Electronic energy + Delta-G solvation = -22639.895360 eV Core-core repulsion = 19032.478109 eV Total energy + Delta-G solvation = -3607.417251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.01219 -39.52065 -38.36134 -36.69779 -34.59404 -33.77903 -33.13725 -31.04337 -30.16179 -28.40197 -26.86107 -25.01395 -23.89753 -23.03062 -21.93234 -21.55477 -20.24642 -18.56708 -18.03543 -17.27118 -16.77274 -16.73859 -15.84915 -15.19789 -14.95894 -14.82757 -14.44926 -14.13380 -13.88923 -13.59035 -13.46512 -13.21930 -13.03741 -12.86166 -12.22562 -12.08706 -11.88094 -11.82666 -11.35517 -11.02515 -10.87668 -10.84584 -10.45862 -10.19743 -10.11336 -9.79763 -9.68598 -9.67813 -9.43840 -9.12674 -8.90881 -8.84771 -6.98629 -5.80022 -3.08757 1.25477 1.56529 1.61624 2.38445 3.19272 3.30153 3.41722 3.47750 3.49853 4.02002 4.28032 4.55602 4.56500 4.60295 4.85566 4.90286 5.04139 5.11209 5.14888 5.28720 5.47012 5.63624 5.68083 5.75774 5.91139 6.00654 6.14606 6.20493 6.25723 6.41218 6.46969 6.63277 6.78903 6.93946 7.08138 7.31970 7.64388 7.70408 8.22838 8.39320 9.49987 10.08078 10.42343 11.42559 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.002595 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.291361 B =10788.868415 C =11948.295428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.280 5.280 3 C -0.004 4.004 4 C -0.103 4.103 5 Cl -0.009 7.009 6 C 0.000 4.000 7 C 0.596 3.404 8 O -0.523 6.523 9 N -0.709 5.709 10 C 0.132 3.868 11 C -0.120 4.120 12 H 0.093 0.907 13 C -0.168 4.168 14 C 0.167 3.833 15 H 0.062 0.938 16 N -0.706 5.706 17 C -0.240 4.240 18 H 0.073 0.927 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C -0.147 4.147 26 N -0.243 5.243 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.192 0.808 31 H 0.408 0.592 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.077 0.923 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 25.054 -0.794 25.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.068 5.068 3 C -0.148 4.148 4 C -0.141 4.141 5 Cl 0.019 6.981 6 C -0.161 4.161 7 C 0.380 3.620 8 O -0.397 6.397 9 N -0.360 5.360 10 C 0.009 3.991 11 C -0.138 4.138 12 H 0.111 0.889 13 C -0.209 4.209 14 C 0.055 3.945 15 H 0.080 0.920 16 N -0.345 5.345 17 C -0.371 4.371 18 H 0.091 0.909 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.187 4.187 26 N -0.079 5.079 27 H 0.108 0.892 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.209 0.791 31 H 0.243 0.757 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.116 24.323 -0.905 24.539 hybrid contribution -0.550 -0.001 -0.137 0.567 sum -3.666 24.323 -1.043 24.620 Atomic orbital electron populations 1.22293 0.72037 1.05982 1.04992 1.45391 1.08072 1.02643 1.50694 1.22632 0.89363 0.94257 1.08564 1.20835 0.89380 0.91121 1.12763 1.98366 1.35626 1.66959 1.97118 1.21978 0.91350 0.92556 1.10226 1.16773 0.86332 0.81706 0.77237 1.90828 1.21947 1.77037 1.49888 1.45913 1.11345 1.05014 1.73761 1.21539 0.87680 0.87945 1.01966 1.22711 0.99983 0.91300 0.99839 0.88854 1.23888 1.01949 1.00577 0.94521 1.21061 0.90864 0.88827 0.93762 0.91958 1.42185 1.47168 1.23489 1.21635 1.19341 1.18652 0.98350 1.00764 0.90943 1.24763 0.99863 0.99319 0.97043 1.69674 1.33040 1.38572 1.16802 0.86103 0.78051 0.83135 0.78818 1.20493 1.21841 1.21888 1.23444 0.96872 0.96966 1.01411 1.73678 1.02091 1.13876 1.18299 0.89207 0.87894 0.88260 0.79114 0.75694 0.91301 0.91535 0.91517 0.91354 0.78106 0.93525 0.90403 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.30 11.32 59.85 0.68 0.97 16 2 N -0.28 -2.34 3.72 -67.94 -0.25 -2.59 16 3 C 0.00 -0.04 11.49 -16.86 -0.19 -0.23 16 4 C -0.10 -1.21 6.80 -39.31 -0.27 -1.47 16 5 Cl -0.01 -0.11 28.17 -51.86 -1.46 -1.57 16 6 C 0.00 0.00 7.13 -82.76 -0.59 -0.59 16 7 C 0.60 9.07 7.82 -12.41 -0.10 8.97 16 8 O -0.52 -9.17 15.87 5.31 0.08 -9.09 16 9 N -0.71 -9.96 5.55 -61.31 -0.34 -10.30 16 10 C 0.13 1.86 5.51 -4.04 -0.02 1.84 16 11 C -0.12 -1.85 3.63 -89.81 -0.33 -2.17 16 12 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 13 C -0.17 -2.87 7.43 -25.92 -0.19 -3.06 16 14 C 0.17 3.29 4.56 -67.11 -0.31 2.98 16 15 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 16 N -0.71 -17.50 5.31 -52.63 -0.28 -17.78 16 17 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 21 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C -0.15 -2.39 7.39 -25.91 -0.19 -2.58 16 26 N -0.24 -2.87 11.66 33.42 0.39 -2.48 16 27 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.10 0.05 8.13 -51.93 -0.42 -0.37 16 30 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.41 5.42 8.19 -40.82 -0.33 5.08 16 32 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.05 7.90 -51.93 -0.41 0.64 16 36 H 0.38 10.08 7.90 -40.82 -0.32 9.76 16 37 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -33.98 351.98 -7.85 -41.84 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.24 Total: 9.22 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.76 Total: -2.60 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.24 Total: -60.30 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.46 Total: -1.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.98 -7.85 -41.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086374864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.110 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds