Wall clock time and date at job start Fri Apr 10 2020 18:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35643 * 124.93025 * 2 1 4 4 C 1.35466 * 107.12863 * 179.69877 * 3 2 1 5 5 Cl 1.73602 * 127.23768 * 180.24448 * 4 3 2 6 6 C 1.41542 * 105.52647 * 0.26143 * 4 3 2 7 7 C 1.47663 * 126.46325 * 179.97438 * 6 4 3 8 8 O 1.21569 * 120.00019 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00000 * 180.02562 * 7 6 4 10 10 C 1.46503 * 120.00368 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47396 * 180.02562 * 10 9 7 12 12 H 1.09000 * 112.85018 * 316.19159 * 11 10 9 13 13 C 1.53778 * 113.61644 * 87.50308 * 11 10 9 14 14 C 1.53773 * 87.08598 * 139.97954 * 13 11 10 15 15 H 1.08997 * 113.69517 * 220.01040 * 14 13 11 16 16 N 1.46507 * 113.61649 * 89.11281 * 14 13 11 17 17 C 1.36937 * 119.99747 * 107.50187 * 16 14 13 18 18 H 1.08002 * 120.00196 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99848 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99878 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99796 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47408 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47048 * 120.00284 * 21 19 17 24 24 H 1.48503 * 109.47032 * 239.99752 * 21 19 17 25 25 C 1.53781 * 113.61241 * 184.99993 * 11 10 9 26 26 N 1.28472 * 124.93717 * 180.17275 * 2 1 3 27 27 H 1.09002 * 109.47196 * 90.00027 * 1 2 3 28 28 H 1.09001 * 109.47311 * 209.99613 * 1 2 3 29 29 H 1.08991 * 109.47698 * 330.00144 * 1 2 3 30 30 H 1.08002 * 126.43840 * 359.96657 * 3 2 1 31 31 H 0.97005 * 120.00100 * 0.02562 * 9 7 6 32 32 H 1.09006 * 109.46347 * 300.00267 * 10 9 7 33 33 H 1.09001 * 109.47113 * 59.99643 * 10 9 7 34 34 H 1.09002 * 113.61339 * 254.52989 * 13 11 10 35 35 H 1.09004 * 113.61406 * 25.42505 * 13 11 10 36 36 H 0.96995 * 119.99672 * 287.51319 * 16 14 13 37 37 H 0.97000 * 119.99877 * 179.97438 * 20 19 17 38 38 H 1.08998 * 113.61361 * 334.56292 * 25 11 10 39 39 H 1.09002 * 113.61636 * 105.39035 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2416 1.1121 0.0000 4 6 3.5314 0.6979 0.0068 5 17 4.9541 1.6927 0.0158 6 6 3.4753 -0.7164 0.0046 7 6 4.6270 -1.6404 0.0094 8 8 5.7600 -1.1995 0.0164 9 7 4.4223 -2.9725 0.0060 10 6 5.5650 -3.8893 0.0113 11 6 5.0602 -5.3336 0.0053 12 1 4.2319 -5.4953 0.6952 13 6 4.8078 -5.8921 -1.4050 14 6 5.4131 -7.2141 -0.9046 15 1 6.0578 -7.7045 -1.6340 16 7 4.4286 -8.1237 -0.3131 17 6 4.0474 -9.2527 -0.9878 18 1 4.4729 -9.4729 -1.9557 19 6 3.1143 -10.1142 -0.4276 20 7 2.5962 -9.8461 0.7523 21 14 2.5949 -11.6547 -1.3476 22 1 3.3188 -11.7259 -2.6422 23 1 2.9201 -12.8520 -0.5315 24 1 1.1322 -11.6106 -1.6007 25 6 6.1812 -6.3785 0.1331 26 7 2.2007 -1.0532 -0.0032 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5137 30 1 1.8966 2.1355 -0.0005 31 1 3.5183 -3.3243 0.0000 32 1 6.1752 -3.7143 -0.8748 33 1 6.1646 -3.7173 0.9052 34 1 3.7512 -5.9656 -1.6629 35 1 5.4007 -5.4059 -2.1798 36 1 4.0467 -7.9260 0.5563 37 1 1.9438 -10.4479 1.1436 38 1 7.1496 -6.0253 -0.2212 39 1 6.2344 -6.8437 1.1174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086374864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:05 Heat of formation + Delta-G solvation = 48.221182 kcal Electronic energy + Delta-G solvation = -22640.938376 eV Core-core repulsion = 19032.478109 eV Total energy + Delta-G solvation = -3608.460267 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.75655 -40.75090 -39.74282 -37.52639 -36.01302 -34.99489 -34.35086 -32.13664 -31.70394 -29.41781 -27.84806 -26.42613 -25.72789 -24.16016 -22.89279 -22.62598 -21.27539 -19.87924 -19.37108 -18.90770 -17.63391 -17.47254 -17.06127 -16.65465 -16.29090 -15.80557 -15.72726 -15.56372 -15.09450 -14.76010 -14.57717 -14.51224 -13.91018 -13.68248 -13.51728 -13.27613 -12.94421 -12.91672 -12.83182 -12.65141 -12.63136 -12.12785 -12.04446 -11.79660 -11.54646 -11.47484 -11.14191 -10.91522 -10.78252 -10.45735 -10.09334 -9.83022 -8.99564 -7.95000 -5.23290 0.36293 0.83103 0.93732 1.48146 1.48469 1.58764 1.68456 2.16898 2.22964 2.56036 3.31421 3.37728 3.66601 3.73052 3.79772 3.83280 3.97111 4.15666 4.30255 4.33431 4.41266 4.41574 4.45339 4.71250 4.72178 4.75641 4.85639 4.94232 5.00015 5.12270 5.26119 5.35529 5.47474 5.54736 5.64169 5.66997 6.28888 6.37121 6.69614 7.10834 7.33651 8.10832 8.33323 9.28613 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.002595 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.291361 B =10788.868415 C =11948.295428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.270 5.270 3 C 0.023 3.977 4 C -0.133 4.133 5 Cl -0.020 7.020 6 C -0.032 4.032 7 C 0.593 3.407 8 O -0.554 6.554 9 N -0.706 5.706 10 C 0.140 3.860 11 C -0.103 4.103 12 H 0.079 0.921 13 C -0.154 4.154 14 C 0.145 3.855 15 H 0.062 0.938 16 N -0.720 5.720 17 C -0.240 4.240 18 H 0.077 0.923 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.973 3.027 22 H -0.266 1.266 23 H -0.294 1.294 24 H -0.294 1.294 25 C -0.132 4.132 26 N -0.261 5.261 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.237 0.763 31 H 0.411 0.589 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.092 0.908 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.108 0.892 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 26.647 -1.644 26.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.059 5.059 3 C -0.122 4.122 4 C -0.170 4.170 5 Cl 0.009 6.991 6 C -0.191 4.191 7 C 0.378 3.622 8 O -0.431 6.431 9 N -0.357 5.357 10 C 0.018 3.982 11 C -0.122 4.122 12 H 0.097 0.903 13 C -0.195 4.195 14 C 0.035 3.965 15 H 0.080 0.920 16 N -0.359 5.359 17 C -0.372 4.372 18 H 0.095 0.905 19 C -0.269 4.269 20 N -0.620 5.620 21 Si 0.802 3.198 22 H -0.190 1.190 23 H -0.221 1.221 24 H -0.221 1.221 25 C -0.171 4.171 26 N -0.099 5.099 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.155 0.845 30 H 0.254 0.746 31 H 0.246 0.754 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.126 0.874 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.882 25.929 -1.790 26.279 hybrid contribution -0.367 -0.410 0.097 0.559 sum -4.250 25.519 -1.692 25.926 Atomic orbital electron populations 1.22781 0.69105 1.07814 1.06628 1.45949 1.09579 1.02003 1.48353 1.23273 0.87875 0.95801 1.05233 1.21081 0.90483 0.90540 1.14911 1.98352 1.36586 1.66911 1.97284 1.21794 0.91470 0.93123 1.12762 1.17073 0.86679 0.81978 0.76462 1.90793 1.23254 1.77547 1.51464 1.45884 1.11406 1.04939 1.73499 1.21403 0.87700 0.86858 1.02283 1.22494 0.99233 0.92136 0.98363 0.90300 1.23728 1.00796 0.98952 0.96009 1.21380 0.90765 0.89221 0.95150 0.92016 1.42327 1.48311 1.23907 1.21313 1.19712 1.17831 0.98902 1.00776 0.90533 1.25559 1.00660 1.02544 0.98099 1.69823 1.34036 1.39724 1.18441 0.85080 0.77357 0.79320 0.78045 1.19043 1.22105 1.22091 1.23345 0.98068 0.95872 0.99857 1.73626 1.01805 1.15470 1.18967 0.87612 0.88078 0.84533 0.74628 0.75359 0.90857 0.91318 0.93580 0.88960 0.79384 0.94034 0.87381 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 11.32 127.77 1.45 1.71 16 2 N -0.27 -3.84 3.72 -368.87 -1.37 -5.21 16 3 C 0.02 0.30 11.49 83.46 0.96 1.26 16 4 C -0.13 -2.94 6.80 22.44 0.15 -2.79 16 5 Cl -0.02 -0.46 28.17 -2.72 -0.08 -0.53 16 6 C -0.03 -0.85 7.13 42.45 0.30 -0.55 16 7 C 0.59 18.15 7.82 86.73 0.68 18.82 16 8 O -0.55 -19.63 15.87 -3.93 -0.06 -19.69 16 9 N -0.71 -19.74 5.55 -466.15 -2.59 -22.33 16 10 C 0.14 3.85 5.51 86.38 0.48 4.33 16 11 C -0.10 -3.13 3.63 -10.27 -0.04 -3.17 16 12 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 13 C -0.15 -5.13 7.43 31.12 0.23 -4.90 16 14 C 0.14 5.63 4.56 45.52 0.21 5.83 16 15 H 0.06 2.39 8.10 -2.39 -0.02 2.37 16 16 N -0.72 -36.14 5.31 -320.44 -1.70 -37.84 16 17 C -0.24 -13.32 9.97 84.03 0.84 -12.48 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 19 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 20 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 21 Si 0.97 46.03 29.55 68.60 2.03 48.05 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 C -0.13 -4.14 7.39 31.12 0.23 -3.91 16 26 N -0.26 -5.90 11.66 -48.17 -0.56 -6.46 16 27 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.14 -0.50 8.13 -2.39 -0.02 -0.52 16 30 H 0.24 0.71 8.06 -2.91 -0.02 0.69 16 31 H 0.41 10.97 8.19 -92.70 -0.76 10.21 16 32 H 0.07 1.98 7.84 -2.38 -0.02 1.96 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 2.65 7.90 -2.38 -0.02 2.63 16 36 H 0.37 20.10 7.90 -92.71 -0.73 19.37 16 37 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.11 2.76 8.10 -2.39 -0.02 2.74 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -75.37 351.98 1.50 -73.87 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -0.40 Total: 28.75 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.95 Total: 0.24 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -5.94 Total: -130.69 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.06 Total: -19.69 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.53 kcal Total: -75.37 1.50 -73.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086374864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.093 kcal (2) G-P(sol) polarization free energy of solvation -75.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds