Wall clock time and date at job start Fri Apr 10 2020 18:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47261 * 135.94051 * 359.63112 * 9 7 2 11 11 C 1.52688 * 87.62898 * 153.84364 * 10 9 7 12 12 C 1.47256 * 135.93747 * 179.97438 * 9 7 2 13 13 C 1.53381 * 115.77956 * 141.57315 * 11 10 9 14 14 C 1.54774 * 101.45028 * 156.73412 * 13 11 10 15 15 H 1.09003 * 110.47431 * 94.51310 * 14 13 11 16 16 N 1.46500 * 110.45402 * 217.09421 * 14 13 11 17 17 C 1.34775 * 119.99979 * 201.33630 * 16 14 13 18 18 O 1.21284 * 119.99841 * 0.02562 * 17 16 14 19 19 C 1.50696 * 120.00122 * 180.02562 * 17 16 14 20 20 F 1.39907 * 109.47068 * 185.00241 * 19 17 16 21 21 F 1.39893 * 109.47117 * 305.00022 * 19 17 16 22 22 C 1.51659 * 104.31116 * 335.80135 * 14 13 11 23 23 N 1.30850 * 141.38632 * 196.15588 * 22 14 13 24 24 C 1.33975 * 109.36234 * 180.09261 * 23 22 14 25 25 C 1.34519 * 108.04560 * 359.97438 * 24 23 22 26 26 N 1.35146 * 110.00770 * 16.19175 * 22 14 13 27 27 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 1.09006 * 113.50495 * 268.51314 * 10 9 7 29 29 H 1.08996 * 113.50923 * 39.07945 * 10 9 7 30 30 H 1.09002 * 113.50997 * 320.90485 * 12 9 7 31 31 H 1.08999 * 113.50873 * 91.48526 * 12 9 7 32 32 H 1.09004 * 111.02930 * 274.76843 * 13 11 10 33 33 H 1.09005 * 111.03165 * 38.68675 * 13 11 10 34 34 H 0.96996 * 120.00431 * 21.34385 * 16 14 13 35 35 H 1.09000 * 109.47199 * 65.00482 * 19 17 16 36 36 H 1.07997 * 125.97934 * 180.02562 * 24 23 22 37 37 H 1.08006 * 126.53462 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.0903 -2.7925 0.0067 11 6 0.3430 -4.0898 -0.6720 12 6 1.6835 -3.8165 0.0005 13 6 -0.3883 -5.3583 -0.2150 14 6 -0.1877 -6.2859 -1.4376 15 1 0.6845 -6.9236 -1.2933 16 7 -1.3853 -7.0982 -1.6659 17 6 -1.2982 -8.2443 -2.3697 18 8 -0.2281 -8.6034 -2.8136 19 6 -2.5302 -9.0795 -2.6051 20 9 -2.1722 -10.2658 -3.2546 21 9 -3.1297 -9.3824 -1.3779 22 6 0.0369 -5.3346 -2.5972 23 7 0.0400 -5.2997 -3.9052 24 6 0.3393 -4.0600 -4.3158 25 6 0.5291 -3.2946 -3.2260 26 7 0.3369 -4.1016 -2.1322 27 1 -0.4850 0.8401 0.0004 28 1 -0.4960 -2.9399 1.0076 29 1 -0.7247 -2.1640 -0.6182 30 1 2.5416 -4.0497 -0.6298 31 1 1.7640 -4.2445 0.9997 32 1 0.0780 -5.7791 0.6759 33 1 -1.4464 -5.1597 -0.0440 34 1 -2.2410 -6.8111 -1.3107 35 1 -3.2331 -8.5234 -3.2255 36 1 0.4142 -3.7323 -5.3421 37 1 0.7842 -2.2451 -3.2139 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092338036.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:21 Heat of formation + Delta-G solvation = 12.484327 kcal Electronic energy + Delta-G solvation = -26150.513603 eV Core-core repulsion = 21988.706990 eV Total energy + Delta-G solvation = -4161.806613 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.40658 -47.42776 -42.31331 -39.66715 -38.66058 -35.85531 -33.53550 -31.93887 -30.88427 -28.52268 -28.35196 -27.08260 -25.20185 -24.44382 -22.05414 -21.48887 -21.40270 -19.96640 -18.85842 -18.73370 -17.99043 -17.67808 -16.99962 -16.41458 -15.74106 -15.38438 -14.95283 -14.90307 -14.56211 -14.23127 -14.11237 -13.96622 -13.76817 -13.70062 -13.46608 -13.38752 -13.12577 -12.60606 -12.39048 -12.26145 -12.05954 -11.60608 -11.51527 -10.98895 -10.93857 -10.28226 -10.27393 -10.09995 -9.75833 -9.68367 -9.49440 -9.08221 -8.97518 -7.99454 -7.19646 -6.00430 -3.35143 1.99218 2.16616 2.56436 3.13454 3.27106 3.31848 3.32702 3.47803 3.58955 3.81674 4.00366 4.23748 4.30675 4.30915 4.49730 4.62142 4.73354 5.01646 5.22740 5.32032 5.40528 5.59020 5.66750 5.75849 5.93463 5.99267 6.08046 6.15805 6.19431 6.65918 6.83190 6.86930 6.95603 7.19638 7.22744 7.52636 7.67292 7.71246 8.49805 8.78876 9.45857 10.30609 11.16621 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.029328 B = 0.003397 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.485602 B = 8240.941191 C = 8665.836170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.001 4.001 3 Si 0.916 3.084 4 H -0.288 1.288 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.083 0.917 9 N -0.603 5.603 10 C 0.161 3.839 11 C 0.095 3.905 12 C 0.119 3.881 13 C -0.114 4.114 14 C 0.235 3.765 15 H 0.118 0.882 16 N -0.701 5.701 17 C 0.478 3.522 18 O -0.486 6.486 19 C 0.259 3.741 20 F -0.176 7.176 21 F -0.190 7.190 22 C 0.147 3.853 23 N -0.468 5.468 24 C -0.048 4.048 25 C 0.011 3.989 26 N -0.426 5.426 27 H 0.257 0.743 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.408 0.592 35 H 0.138 0.862 36 H 0.170 0.830 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.926 -13.386 -1.341 15.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.198 4.198 3 Si 0.745 3.255 4 H -0.214 1.214 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.352 4.352 8 H 0.101 0.899 9 N -0.328 5.328 10 C 0.034 3.966 11 C 0.008 3.992 12 C -0.008 4.008 13 C -0.154 4.154 14 C 0.129 3.871 15 H 0.135 0.865 16 N -0.354 5.354 17 C 0.259 3.741 18 O -0.358 6.358 19 C 0.202 3.798 20 F -0.157 7.157 21 F -0.171 7.171 22 C -0.117 4.117 23 N -0.187 5.187 24 C -0.196 4.196 25 C -0.123 4.123 26 N -0.107 5.107 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.244 0.756 35 H 0.155 0.845 36 H 0.187 0.813 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.198 -13.760 -2.038 15.228 hybrid contribution 0.230 1.893 0.701 2.031 sum -5.969 -11.867 -1.337 13.351 Atomic orbital electron populations 1.69779 1.05075 1.25958 1.55697 1.24794 0.95713 0.97654 1.01684 0.86147 0.78525 0.82657 0.78134 1.21383 1.20975 1.20863 1.18866 0.90183 0.81003 1.45186 0.89904 1.45606 1.01890 0.99149 1.86180 1.22306 0.89917 0.87300 0.97038 1.22523 1.01041 0.97912 0.77703 1.22660 0.93472 0.87500 0.97214 1.22776 1.02851 0.92734 0.97011 1.19993 0.89043 0.89378 0.88725 0.86466 1.45804 1.12306 1.22388 1.54948 1.20968 0.90655 0.82601 0.79913 1.90853 1.28047 1.70174 1.46720 1.21657 0.93362 0.83811 0.80985 1.93063 1.93054 1.48750 1.80847 1.93050 1.84484 1.94168 1.45387 1.24311 1.08246 0.87448 0.91658 1.69735 1.19506 1.21967 1.07497 1.22192 1.09682 0.89272 0.98468 1.22552 1.07360 0.98384 0.84003 1.45615 1.49212 1.09953 1.05903 0.93285 0.93420 0.90034 0.93229 0.92624 0.87150 0.88472 0.75592 0.84465 0.81265 0.80937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.26 11.51 55.49 0.64 -24.62 16 2 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16 3 Si 0.92 20.95 29.55 -169.99 -5.02 15.92 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.23 -5.87 10.74 -15.06 -0.16 -6.04 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -13.93 3.79 -184.72 -0.70 -14.63 16 10 C 0.16 3.28 6.94 -7.77 -0.05 3.23 16 11 C 0.10 1.56 1.64 -133.43 -0.22 1.34 16 12 C 0.12 2.16 8.18 -7.90 -0.06 2.09 16 13 C -0.11 -1.29 6.24 -25.60 -0.16 -1.45 16 14 C 0.24 3.03 3.23 -67.68 -0.22 2.81 16 15 H 0.12 1.57 7.67 -51.93 -0.40 1.17 16 16 N -0.70 -7.29 5.16 -53.56 -0.28 -7.56 16 17 C 0.48 5.75 7.62 -10.99 -0.08 5.67 16 18 O -0.49 -8.07 16.33 5.55 0.09 -7.98 16 19 C 0.26 2.29 5.72 36.00 0.21 2.50 16 20 F -0.18 -2.04 16.95 2.25 0.04 -2.00 16 21 F -0.19 -1.65 17.32 2.25 0.04 -1.61 16 22 C 0.15 2.49 8.22 -154.56 -1.27 1.22 16 23 N -0.47 -8.74 11.25 -10.49 -0.12 -8.86 16 24 C -0.05 -0.84 11.86 -17.93 -0.21 -1.05 16 25 C 0.01 0.21 12.03 -16.43 -0.20 0.01 16 26 N -0.43 -7.63 3.42 -100.97 -0.34 -7.97 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.93 7.15 -51.93 -0.37 1.56 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.89 7.98 -51.93 -0.41 0.48 16 32 H 0.11 0.98 7.87 -51.93 -0.41 0.57 16 33 H 0.10 0.91 7.80 -51.93 -0.40 0.51 16 34 H 0.41 2.92 8.38 -40.82 -0.34 2.58 16 35 H 0.14 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.17 2.46 8.06 -52.49 -0.42 2.03 16 37 H 0.17 3.34 8.06 -52.48 -0.42 2.92 16 LS Contribution 328.05 15.07 4.94 4.94 Total: -1.00 -33.80 328.05 -7.24 -41.04 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.00 Total: 3.12 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -2.53 Total: 10.21 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -0.80 Total: -63.65 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.09 Total: -7.98 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.08 Total: -3.61 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.80 -7.24 -41.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092338036.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.525 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds