Wall clock time and date at job start Fri Apr 10 2020 18:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35507 * 117.00035 * 2 1 4 4 C 1.39434 * 120.46540 * 180.02562 * 3 2 1 5 5 C 1.38204 * 118.50588 * 180.02562 * 4 3 2 6 6 N 1.32460 * 119.27042 * 0.02562 * 5 4 3 7 7 C 1.32468 * 120.88610 * 359.97438 * 6 5 4 8 8 N 1.38397 * 119.18658 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99959 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 8 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21273 * 120.00093 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 179.97438 * 12 11 10 15 15 S 1.80999 * 109.47324 * 179.97438 * 14 12 11 16 16 C 1.76198 * 100.00237 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99945 * 0.02562 * 16 15 14 18 18 C 1.38795 * 119.99810 * 180.02562 * 16 15 14 19 19 N 1.31626 * 120.00234 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99877 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47143 * 89.99793 * 20 18 16 22 22 H 1.48497 * 109.47033 * 210.00093 * 20 18 16 23 23 H 1.48500 * 109.46734 * 329.99727 * 20 18 16 24 24 N 1.32487 * 121.62717 * 0.27568 * 7 6 5 25 25 H 1.08998 * 109.47284 * 299.99734 * 1 2 3 26 26 H 1.08996 * 109.47439 * 59.99879 * 1 2 3 27 27 H 1.09011 * 109.47206 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.74999 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.36298 * 180.02562 * 5 4 3 30 30 H 0.97000 * 119.99620 * 179.97438 * 8 7 6 31 31 H 1.09002 * 109.47391 * 59.99901 * 9 8 7 32 32 H 1.09001 * 109.46813 * 299.99957 * 9 8 7 33 33 H 1.09001 * 109.47194 * 299.99493 * 10 9 8 34 34 H 1.08992 * 109.47399 * 59.99666 * 10 9 8 35 35 H 0.97005 * 120.00448 * 359.97438 * 11 10 9 36 36 H 1.08998 * 109.47224 * 300.00395 * 14 12 11 37 37 H 1.09002 * 109.47152 * 59.99840 * 14 12 11 38 38 H 0.97007 * 120.00127 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4360 1.2916 -0.0005 5 6 4.0210 2.5438 0.0000 6 7 3.2482 3.6196 0.0016 7 6 1.9282 3.5087 0.0021 8 7 1.1545 4.6562 0.0031 9 6 1.7969 5.9728 0.0032 10 6 0.7242 7.0637 0.0051 11 7 1.3666 8.3803 0.0057 12 6 0.6132 9.4978 0.0069 13 8 -0.5966 9.4134 0.0070 14 6 1.2740 10.8522 0.0081 15 16 0.0050 12.1428 0.0088 16 6 1.0278 13.5776 0.0094 17 1 2.1028 13.4744 0.0089 18 6 0.4517 14.8404 0.0105 19 7 -0.8585 14.9661 0.0106 20 14 1.5360 16.3616 0.0105 21 1 1.8223 16.7654 -1.3896 22 1 0.8365 17.4680 0.7117 23 1 2.8112 16.0604 0.7094 24 7 1.3303 2.3264 0.0065 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0278 -0.0005 28 1 4.0433 0.3985 -0.0005 29 1 5.0963 2.6440 -0.0008 30 1 0.1868 4.5887 0.0031 31 1 2.4174 6.0744 -0.8873 32 1 2.4188 6.0736 0.8927 33 1 0.1020 6.9631 -0.8842 34 1 0.1041 6.9620 0.8957 35 1 2.3343 8.4479 0.0053 36 1 1.8953 10.9525 0.8981 37 1 1.8951 10.9543 -0.8818 38 1 -1.2611 15.8487 0.0118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093525398.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:28 Heat of formation + Delta-G solvation = -15.155860 kcal Electronic energy + Delta-G solvation = -21562.029013 eV Core-core repulsion = 17952.864218 eV Total energy + Delta-G solvation = -3609.164795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45755 -39.33274 -38.94984 -36.72844 -34.43214 -33.43987 -32.44044 -31.49786 -29.89615 -27.99205 -27.62345 -25.49699 -24.28631 -23.71599 -22.44952 -20.50506 -19.07076 -18.62786 -17.82812 -16.73845 -16.66664 -16.39858 -15.96634 -15.69937 -15.55058 -15.30313 -14.98894 -14.81252 -14.61444 -14.23328 -14.04964 -13.82114 -13.18474 -12.67047 -12.57924 -12.45123 -12.06716 -12.02241 -11.71793 -11.25268 -11.07194 -11.03653 -11.00048 -10.77441 -9.97607 -9.83398 -9.63676 -9.50754 -9.08903 -9.00218 -8.46572 -8.25770 -6.51803 -6.22807 -3.93683 0.84286 0.92989 2.20795 2.61549 3.03110 3.07727 3.21932 3.28031 3.32871 3.55443 3.70832 3.80423 4.19252 4.40546 4.47828 4.56941 4.81652 4.83419 4.87222 4.96728 5.08770 5.11632 5.12532 5.18662 5.21949 5.55316 5.63881 5.64475 5.80231 5.86832 6.11679 6.38414 6.48297 6.54827 6.73210 7.07197 7.58290 7.60707 7.96460 8.34138 8.53112 9.22606 10.84595 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.043387 B = 0.001784 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.194321 B =15687.049843 C =16301.193550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.302 6.302 3 C 0.402 3.598 4 C -0.307 4.307 5 C 0.217 3.783 6 N -0.586 5.586 7 C 0.603 3.397 8 N -0.692 5.692 9 C 0.129 3.871 10 C 0.110 3.890 11 N -0.736 5.736 12 C 0.534 3.466 13 O -0.516 6.516 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 N -0.625 5.625 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.149 0.851 29 H 0.175 0.825 30 H 0.417 0.583 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.117 -29.071 -0.040 30.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.205 6.205 3 C 0.214 3.786 4 C -0.334 4.334 5 C 0.052 3.948 6 N -0.313 5.313 7 C 0.245 3.755 8 N -0.329 5.329 9 C 0.004 3.996 10 C -0.016 4.016 11 N -0.391 5.391 12 C 0.320 3.680 13 O -0.389 6.389 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 N -0.365 5.365 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.166 0.834 29 H 0.192 0.808 30 H 0.254 0.746 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.235 0.765 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.530 -28.398 -0.027 29.139 hybrid contribution 2.348 0.321 -0.010 2.370 sum 8.878 -28.077 -0.038 29.447 Atomic orbital electron populations 1.22952 0.76595 1.03334 1.02912 1.86257 1.23502 1.24111 1.86664 1.19748 0.89248 0.83890 0.85762 1.21592 0.92439 1.01093 1.18270 1.22784 1.00105 0.85901 0.85982 1.68002 1.03833 1.34130 1.25359 1.18771 0.85486 0.84678 0.86516 1.43896 1.08500 1.01695 1.78793 1.21413 0.95045 0.79708 1.03450 1.21303 0.95065 0.81963 1.03230 1.45774 1.10279 1.04739 1.78341 1.20327 0.87426 0.85219 0.74996 1.90710 1.13989 1.86914 1.47319 1.23528 1.05576 0.96151 1.05115 1.85406 1.06726 0.94517 1.96736 1.22867 0.94612 0.91927 1.59005 0.90862 1.24995 0.95388 0.98695 0.94512 1.70017 1.09209 1.24229 1.46827 0.86160 0.79891 0.81051 0.78353 1.20265 1.20753 1.19681 1.67357 1.41492 0.97975 1.29646 0.91918 0.91939 0.88267 0.83367 0.80781 0.74582 0.90525 0.90531 0.90922 0.90928 0.76452 0.89041 0.89045 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.41 101.05 1.05 1.28 16 2 O -0.30 -2.62 10.49 -18.21 -0.19 -2.82 16 3 C 0.40 3.89 7.53 -16.71 -0.13 3.76 16 4 C -0.31 -2.37 10.12 -39.15 -0.40 -2.76 16 5 C 0.22 1.62 11.29 -17.29 -0.20 1.42 16 6 N -0.59 -5.85 9.58 -14.00 -0.13 -5.98 16 7 C 0.60 6.36 8.42 -322.86 -2.72 3.64 16 8 N -0.69 -6.25 5.70 -62.32 -0.36 -6.60 16 9 C 0.13 1.09 5.76 -4.04 -0.02 1.06 16 10 C 0.11 1.14 5.79 -4.04 -0.02 1.12 16 11 N -0.74 -9.08 5.56 -60.30 -0.33 -9.41 16 12 C 0.53 9.60 7.85 -10.98 -0.09 9.51 16 13 O -0.52 -11.41 15.86 5.56 0.09 -11.32 16 14 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 15 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 16 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.04 13.22 55.49 0.73 -25.30 16 20 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 N -0.63 -6.60 9.40 -13.99 -0.13 -6.73 16 25 H 0.06 0.40 8.11 -51.93 -0.42 -0.02 16 26 H 0.06 0.40 8.12 -51.93 -0.42 -0.02 16 27 H 0.10 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 29 H 0.18 0.66 8.06 -52.49 -0.42 0.23 16 30 H 0.42 3.35 8.59 -40.82 -0.35 3.00 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.40 3.74 8.47 -40.82 -0.35 3.39 16 36 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 37 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -36.19 352.09 -9.24 -45.43 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -4.89 Total: 1.62 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -2.10 Total: 3.40 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.22 Total: -54.04 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.10 Total: -14.14 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.19 -9.24 -45.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093525398.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.278 kcal (2) G-P(sol) polarization free energy of solvation -36.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds