Wall clock time and date at job start Fri Apr 10 2020 18:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35507 * 117.00035 * 2 1 4 4 C 1.39434 * 120.46540 * 180.02562 * 3 2 1 5 5 C 1.38204 * 118.50588 * 180.02562 * 4 3 2 6 6 N 1.32460 * 119.27042 * 0.02562 * 5 4 3 7 7 C 1.32468 * 120.88610 * 359.97438 * 6 5 4 8 8 N 1.38397 * 119.18658 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99959 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 8 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21273 * 120.00093 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 179.97438 * 12 11 10 15 15 S 1.80999 * 109.47324 * 179.97438 * 14 12 11 16 16 C 1.76198 * 100.00237 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99945 * 0.02562 * 16 15 14 18 18 C 1.38795 * 119.99810 * 180.02562 * 16 15 14 19 19 N 1.31626 * 120.00234 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99877 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47143 * 89.99793 * 20 18 16 22 22 H 1.48497 * 109.47033 * 210.00093 * 20 18 16 23 23 H 1.48500 * 109.46734 * 329.99727 * 20 18 16 24 24 N 1.32487 * 121.62717 * 0.27568 * 7 6 5 25 25 H 1.08998 * 109.47284 * 299.99734 * 1 2 3 26 26 H 1.08996 * 109.47439 * 59.99879 * 1 2 3 27 27 H 1.09011 * 109.47206 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.74999 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.36298 * 180.02562 * 5 4 3 30 30 H 0.97000 * 119.99620 * 179.97438 * 8 7 6 31 31 H 1.09002 * 109.47391 * 59.99901 * 9 8 7 32 32 H 1.09001 * 109.46813 * 299.99957 * 9 8 7 33 33 H 1.09001 * 109.47194 * 299.99493 * 10 9 8 34 34 H 1.08992 * 109.47399 * 59.99666 * 10 9 8 35 35 H 0.97005 * 120.00448 * 359.97438 * 11 10 9 36 36 H 1.08998 * 109.47224 * 300.00395 * 14 12 11 37 37 H 1.09002 * 109.47152 * 59.99840 * 14 12 11 38 38 H 0.97007 * 120.00127 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4360 1.2916 -0.0005 5 6 4.0210 2.5438 0.0000 6 7 3.2482 3.6196 0.0016 7 6 1.9282 3.5087 0.0021 8 7 1.1545 4.6562 0.0031 9 6 1.7969 5.9728 0.0032 10 6 0.7242 7.0637 0.0051 11 7 1.3666 8.3803 0.0057 12 6 0.6132 9.4978 0.0069 13 8 -0.5966 9.4134 0.0070 14 6 1.2740 10.8522 0.0081 15 16 0.0050 12.1428 0.0088 16 6 1.0278 13.5776 0.0094 17 1 2.1028 13.4744 0.0089 18 6 0.4517 14.8404 0.0105 19 7 -0.8585 14.9661 0.0106 20 14 1.5360 16.3616 0.0105 21 1 1.8223 16.7654 -1.3896 22 1 0.8365 17.4680 0.7117 23 1 2.8112 16.0604 0.7094 24 7 1.3303 2.3264 0.0065 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0278 -0.0005 28 1 4.0433 0.3985 -0.0005 29 1 5.0963 2.6440 -0.0008 30 1 0.1868 4.5887 0.0031 31 1 2.4174 6.0744 -0.8873 32 1 2.4188 6.0736 0.8927 33 1 0.1020 6.9631 -0.8842 34 1 0.1041 6.9620 0.8957 35 1 2.3343 8.4479 0.0053 36 1 1.8953 10.9525 0.8981 37 1 1.8951 10.9543 -0.8818 38 1 -1.2611 15.8487 0.0118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093525398.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:28 Heat of formation + Delta-G solvation = -42.825610 kcal Electronic energy + Delta-G solvation = -21563.228864 eV Core-core repulsion = 17952.864218 eV Total energy + Delta-G solvation = -3610.364645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.10201 -40.65926 -39.61644 -37.56720 -35.49990 -34.57349 -34.13911 -32.35153 -31.10572 -28.90454 -28.31082 -27.62320 -24.95007 -24.46501 -23.21510 -21.84389 -19.88659 -19.72413 -19.22309 -17.82989 -17.54162 -17.32286 -16.92684 -16.87069 -16.72130 -16.25198 -16.06750 -16.02309 -15.65847 -15.22936 -15.15019 -14.71223 -14.56400 -14.35376 -13.76952 -13.15412 -13.10335 -12.94312 -12.87797 -12.85075 -12.58772 -12.57961 -11.88681 -11.72294 -11.67164 -11.13305 -11.03365 -10.63836 -10.31832 -10.26407 -10.18403 -9.11765 -8.65583 -8.33717 -6.11636 0.23095 0.25831 1.23027 1.42199 1.43588 1.54138 1.59569 1.67445 2.03712 2.28219 2.45224 2.89198 3.00633 3.19681 3.33178 3.64700 3.77222 4.01394 4.03613 4.04798 4.33335 4.37141 4.37466 4.39951 4.46519 4.54160 4.56949 4.73071 4.84827 4.86809 5.14631 5.34792 5.43395 5.73891 5.91572 6.10284 6.21032 6.39757 6.47157 7.07845 7.21158 7.29147 8.75414 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.043387 B = 0.001784 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.194321 B =15687.049843 C =16301.193550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.309 6.309 3 C 0.381 3.619 4 C -0.304 4.304 5 C 0.215 3.785 6 N -0.601 5.601 7 C 0.586 3.414 8 N -0.693 5.693 9 C 0.145 3.855 10 C 0.114 3.886 11 N -0.708 5.708 12 C 0.537 3.463 13 O -0.564 6.564 14 C -0.130 4.130 15 S -0.153 6.153 16 C -0.546 4.546 17 H 0.084 0.916 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.257 1.257 24 N -0.641 5.641 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.126 0.874 28 H 0.172 0.828 29 H 0.212 0.788 30 H 0.418 0.582 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.420 0.580 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.045 -29.990 -0.042 32.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.213 6.213 3 C 0.193 3.807 4 C -0.330 4.330 5 C 0.052 3.948 6 N -0.328 5.328 7 C 0.228 3.772 8 N -0.331 5.331 9 C 0.021 3.979 10 C -0.010 4.010 11 N -0.364 5.364 12 C 0.322 3.678 13 O -0.442 6.442 14 C -0.281 4.281 15 S 0.074 5.926 16 C -0.694 4.694 17 H 0.102 0.898 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.181 1.181 24 N -0.382 5.382 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.144 0.856 28 H 0.189 0.811 29 H 0.229 0.771 30 H 0.256 0.744 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.258 0.742 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.516 -29.377 -0.030 30.880 hybrid contribution 1.483 0.405 -0.011 1.537 sum 10.999 -28.971 -0.041 30.989 Atomic orbital electron populations 1.23103 0.75584 1.04949 1.02314 1.86251 1.24582 1.23842 1.86663 1.20165 0.90255 0.83924 0.86387 1.21939 0.91857 1.02246 1.16983 1.23454 1.01579 0.85204 0.84592 1.68055 1.03625 1.35268 1.25900 1.18984 0.86031 0.84895 0.87260 1.43875 1.08639 1.01584 1.78958 1.21219 0.93978 0.78771 1.03951 1.21329 0.95600 0.81287 1.02823 1.45441 1.11012 1.04046 1.75859 1.20043 0.86841 0.85897 0.74973 1.90702 1.16009 1.87495 1.50029 1.23370 1.03218 0.94355 1.07128 1.85589 1.11881 0.98094 1.97069 1.23216 0.95034 0.92339 1.58769 0.89755 1.26128 0.96855 1.02444 0.93778 1.70184 1.11436 1.25125 1.48066 0.84952 0.78059 0.76195 0.78765 1.19349 1.20409 1.18128 1.67319 1.42179 0.98372 1.30288 0.92509 0.92515 0.85572 0.81057 0.77111 0.74361 0.89957 0.89973 0.91398 0.91410 0.74207 0.86909 0.86893 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.41 113.37 1.18 1.59 16 2 O -0.31 -5.15 10.49 -88.09 -0.92 -6.07 16 3 C 0.38 7.03 7.53 84.84 0.64 7.67 16 4 C -0.30 -4.09 10.12 22.55 0.23 -3.87 16 5 C 0.22 2.69 11.29 84.59 0.95 3.64 16 6 N -0.60 -10.90 9.58 -198.21 -1.90 -12.80 16 7 C 0.59 11.81 8.42 261.51 2.20 14.02 16 8 N -0.69 -11.91 5.70 -351.07 -2.00 -13.91 16 9 C 0.15 2.20 5.76 86.38 0.50 2.69 16 10 C 0.11 2.24 5.79 86.38 0.50 2.74 16 11 N -0.71 -16.09 5.56 -463.07 -2.57 -18.66 16 12 C 0.54 18.84 7.85 87.66 0.69 19.52 16 13 O -0.56 -25.36 15.86 -3.01 -0.05 -25.41 16 14 C -0.13 -4.92 6.16 71.24 0.44 -4.49 16 15 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 16 C -0.55 -30.82 9.50 67.95 0.65 -30.17 16 17 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 18 C 0.01 0.71 5.49 84.86 0.47 1.18 16 19 N -0.91 -55.79 13.22 21.65 0.29 -55.51 16 20 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 N -0.64 -13.29 9.40 -310.88 -2.92 -16.21 16 25 H 0.06 0.73 8.11 -2.39 -0.02 0.71 16 26 H 0.06 0.72 8.12 -2.39 -0.02 0.70 16 27 H 0.13 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 29 H 0.21 0.83 8.06 -2.91 -0.02 0.81 16 30 H 0.42 6.61 8.59 -92.71 -0.80 5.82 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.42 6.52 8.47 -92.70 -0.79 5.73 16 36 H 0.11 3.81 8.14 -2.40 -0.02 3.80 16 37 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 38 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -80.70 352.09 -1.25 -81.95 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -0.48 Total: 16.36 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 8.44 Total: 14.54 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -9.11 Total: -117.08 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.97 Total: -31.48 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -80.70 -1.25 -81.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093525398.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.129 kcal (2) G-P(sol) polarization free energy of solvation -80.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds