Wall clock time and date at job start Fri Apr 10 2020 18:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.55473 * 2 1 4 4 N 1.46498 * 109.46943 * 304.87446 * 3 2 1 5 5 C 1.34785 * 120.00193 * 180.02562 * 4 3 2 6 6 O 1.21734 * 119.99835 * 359.97438 * 5 4 3 7 7 C 1.46376 * 120.00002 * 179.97438 * 5 4 3 8 8 C 1.33973 * 119.23234 * 359.72224 * 7 5 4 9 9 O 1.35005 * 121.68556 * 180.12124 * 8 7 5 10 10 C 1.43241 * 116.83122 * 343.32142 * 9 8 7 11 11 C 1.53560 * 108.08707 * 45.25101 * 10 9 8 12 12 O 1.36213 * 119.22869 * 179.97438 * 7 5 4 13 13 C 1.53290 * 109.51447 * 120.12466 * 2 1 3 14 14 N 1.47170 * 108.41499 * 67.64288 * 13 2 1 15 15 C 1.36935 * 120.99701 * 230.54825 * 14 13 2 16 16 H 1.07992 * 120.00220 * 153.32579 * 15 14 13 17 17 C 1.38816 * 119.99598 * 333.33422 * 15 14 13 18 18 N 1.31616 * 120.00208 * 343.52376 * 17 15 14 19 19 Si 1.86797 * 119.99898 * 163.52863 * 17 15 14 20 20 H 1.48504 * 109.47120 * 89.99889 * 19 17 15 21 21 H 1.48504 * 109.47291 * 209.99333 * 19 17 15 22 22 H 1.48497 * 109.47353 * 329.99349 * 19 17 15 23 23 C 1.47156 * 118.02451 * 50.46879 * 14 13 2 24 24 C 1.53294 * 108.41770 * 309.53478 * 23 14 13 25 25 O 1.42961 * 109.22381 * 52.27835 * 24 23 14 26 26 H 1.09004 * 109.46863 * 180.13027 * 1 2 3 27 27 H 1.08999 * 109.47377 * 300.12547 * 1 2 3 28 28 H 1.08996 * 109.46812 * 60.13062 * 1 2 3 29 29 H 1.09003 * 109.47194 * 64.87187 * 3 2 1 30 30 H 1.08999 * 109.47292 * 184.87400 * 3 2 1 31 31 H 0.96997 * 120.00487 * 359.97438 * 4 3 2 32 32 H 1.07994 * 119.15666 * 0.37724 * 8 7 5 33 33 H 1.08995 * 109.74106 * 285.60552 * 10 9 8 34 34 H 1.08992 * 109.77893 * 164.92066 * 10 9 8 35 35 H 1.08996 * 109.75013 * 182.21787 * 11 10 9 36 36 H 1.09006 * 109.75109 * 61.47500 * 11 10 9 37 37 H 1.09000 * 109.68636 * 187.34740 * 13 2 1 38 38 H 1.09007 * 109.68606 * 307.90271 * 13 2 1 39 39 H 0.96998 * 120.00577 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.68193 * 189.78958 * 23 14 13 41 41 H 1.09002 * 109.67597 * 69.27168 * 23 14 13 42 42 H 1.08994 * 109.51442 * 172.20976 * 24 23 14 43 43 H 1.09006 * 109.50925 * 292.30722 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4417 0.0000 4 7 1.4613 2.1662 -1.1332 5 6 1.7725 3.4619 -1.3356 6 8 2.5358 4.0303 -0.5765 7 6 1.1927 4.1856 -2.4681 8 6 0.3588 3.5434 -3.2971 9 8 -0.2021 4.1618 -4.3580 10 6 -0.1736 5.5940 -4.3610 11 6 1.2363 6.0436 -3.9511 12 8 1.5175 5.4947 -2.6576 13 6 2.0421 -0.7251 1.2497 14 7 1.6967 -2.1511 1.1341 15 6 1.0621 -2.8079 2.1543 16 1 0.4437 -3.6673 1.9411 17 6 1.2134 -2.3691 3.4625 18 7 2.1956 -1.5495 3.7723 19 14 0.0232 -2.9418 4.7833 20 1 0.5363 -4.1891 5.4050 21 1 -0.1077 -1.8887 5.8221 22 1 -1.3052 -3.2030 4.1732 23 6 2.0522 -2.8498 -0.1113 24 6 1.5397 -2.0210 -1.2948 25 8 2.0076 -0.6763 -1.1655 26 1 -0.3633 -1.0277 0.0023 27 1 -0.3634 0.5158 0.8888 28 1 -0.3633 0.5118 -0.8911 29 1 1.7525 1.9302 0.9304 30 1 3.1286 1.4414 -0.0873 31 1 0.8534 1.7133 -1.7382 32 1 0.1261 2.5057 -3.1095 33 1 -0.9040 5.9782 -3.6490 34 1 -0.4026 5.9654 -5.3598 35 1 1.2773 7.1319 -3.9063 36 1 1.9648 5.6763 -4.6740 37 1 3.1241 -0.6147 1.3208 38 1 1.5704 -0.3041 2.1377 39 1 2.3016 -1.2431 4.6865 40 1 1.5873 -3.8355 -0.1248 41 1 3.1352 -2.9537 -0.1776 42 1 1.9114 -2.4479 -2.2262 43 1 0.4497 -2.0291 -1.3000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107713302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:57 Heat of formation + Delta-G solvation = -97.483528 kcal Electronic energy + Delta-G solvation = -27047.113951 eV Core-core repulsion = 23095.166633 eV Total energy + Delta-G solvation = -3951.947318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.29767 -39.65225 -38.67221 -37.18967 -34.99086 -34.37583 -32.78435 -31.41920 -31.25474 -29.13584 -27.97610 -26.46457 -25.81425 -25.19543 -23.25992 -22.09814 -21.11934 -19.67348 -18.99038 -18.52847 -18.37712 -17.01275 -16.67351 -15.96134 -15.68215 -15.34601 -15.24422 -15.00190 -14.68771 -14.45234 -14.30933 -14.28026 -14.00410 -13.61831 -13.48307 -13.02922 -12.82856 -12.62031 -12.37925 -11.93492 -11.62629 -11.31517 -11.21669 -11.04251 -10.94140 -10.84030 -10.68175 -10.34266 -10.28452 -10.03082 -9.86844 -9.56991 -9.08935 -8.95852 -8.55860 -8.40141 -6.75641 -5.86432 -3.30207 1.16839 2.51032 2.86049 3.27582 3.32711 3.40417 3.41576 3.67302 3.97297 4.21706 4.41932 4.48351 4.57495 4.60854 4.92149 4.97613 5.10119 5.15150 5.31989 5.43688 5.46624 5.58593 5.65537 5.88732 5.90940 5.98323 6.06256 6.10854 6.26759 6.39369 6.45533 6.53781 6.63823 6.72166 6.80004 7.04098 7.05671 7.44323 7.57246 7.69033 7.84717 8.25580 8.31312 9.08831 9.71860 10.29127 11.21663 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.023198 B = 0.003196 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.724192 B = 8759.424186 C = 9142.394630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.077 3.923 3 C 0.142 3.858 4 N -0.710 5.710 5 C 0.570 3.430 6 O -0.525 6.525 7 C -0.063 4.063 8 C 0.001 3.999 9 O -0.301 6.301 10 C 0.014 3.986 11 C 0.018 3.982 12 O -0.285 6.285 13 C 0.160 3.840 14 N -0.591 5.591 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.384 6.384 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.399 0.601 32 H 0.179 0.821 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.031 0.969 38 H 0.097 0.903 39 H 0.256 0.744 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.081 0.919 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.742 10.930 -16.851 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 C 0.019 3.981 4 N -0.365 5.365 5 C 0.356 3.644 6 O -0.402 6.402 7 C -0.112 4.112 8 C -0.065 4.065 9 O -0.214 6.214 10 C -0.062 4.062 11 C -0.058 4.058 12 O -0.199 6.199 13 C 0.034 3.966 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.213 1.213 21 H -0.214 1.214 22 H -0.205 1.205 23 C -0.017 4.017 24 C -0.032 4.032 25 O -0.304 6.304 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.236 0.764 32 H 0.196 0.804 33 H 0.099 0.901 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.099 0.901 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.030 11.519 -16.264 20.555 hybrid contribution -1.000 -0.563 0.497 1.250 sum -6.030 10.956 -15.767 20.124 Atomic orbital electron populations 1.22218 0.95730 1.03383 1.00682 1.22570 0.93594 0.90518 0.89705 1.21421 0.99039 0.89316 0.88374 1.45859 1.49294 1.10005 1.31313 1.17101 0.81651 0.81766 0.83886 1.90859 1.35392 1.67600 1.46361 1.20489 1.02368 0.87151 1.01214 1.23146 0.94986 0.98594 0.89778 1.86091 1.74296 1.20439 1.40525 1.23723 0.97850 0.79702 1.04902 1.23678 0.96391 1.00844 0.84926 1.86443 1.80218 1.21029 1.32200 1.21288 0.97928 0.83938 0.93493 1.43993 1.68688 1.04905 1.13833 1.19133 1.21495 1.12521 0.85309 0.91455 1.25052 0.97256 1.00029 0.97138 1.70002 1.29190 1.36739 1.18551 0.86300 0.80944 0.77947 0.81594 1.21338 1.21448 1.20461 1.21598 0.97592 0.95219 0.87334 1.23046 0.98312 0.83083 0.98791 1.87825 1.72937 1.25872 1.43764 0.90629 0.91679 0.94125 0.89564 0.90405 0.76409 0.80411 0.90054 0.86125 0.86069 0.90416 0.95126 0.88500 0.93383 0.92038 0.95623 0.90131 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 7.86 37.16 0.29 -2.37 16 2 C 0.08 1.40 0.78 -90.47 -0.07 1.33 16 3 C 0.14 2.40 4.85 -4.04 -0.02 2.38 16 4 N -0.71 -10.28 5.12 -61.71 -0.32 -10.59 16 5 C 0.57 9.17 7.73 -12.98 -0.10 9.07 16 6 O -0.53 -10.62 16.92 -10.06 -0.17 -10.79 16 7 C -0.06 -0.85 6.61 -37.81 -0.25 -1.10 16 8 C 0.00 0.01 10.58 29.23 0.31 0.32 16 9 O -0.30 -2.93 10.47 -30.84 -0.32 -3.25 16 10 C 0.01 0.09 7.30 37.45 0.27 0.37 16 11 C 0.02 0.14 7.31 37.45 0.27 0.41 16 12 O -0.29 -3.82 10.28 -45.75 -0.47 -4.29 16 13 C 0.16 3.66 4.11 -3.53 -0.01 3.64 16 14 N -0.59 -14.12 2.57 -171.81 -0.44 -14.56 16 15 C -0.26 -6.69 9.65 -15.06 -0.15 -6.83 16 16 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 17 C 0.00 0.11 4.95 -17.43 -0.09 0.03 16 18 N -0.90 -25.39 11.14 55.49 0.62 -24.77 16 19 Si 0.90 21.04 29.58 -169.99 -5.03 16.01 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.11 2.19 6.73 -3.53 -0.02 2.17 16 24 C 0.05 0.76 6.60 37.31 0.25 1.01 16 25 O -0.38 -6.88 10.17 -35.23 -0.36 -7.24 16 26 H 0.07 1.36 6.12 -51.93 -0.32 1.04 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.04 0.54 6.59 -51.93 -0.34 0.19 16 29 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.40 4.83 4.84 -40.82 -0.20 4.63 16 32 H 0.18 1.52 6.08 -52.49 -0.32 1.20 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 2.44 6.16 -51.93 -0.32 2.12 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.78 6.26 -51.93 -0.32 0.45 16 LS Contribution 344.24 15.07 5.19 5.19 Total: -1.00 -33.18 344.24 -6.63 -39.81 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.01 Total: 4.08 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 0.68 Total: 10.43 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.14 Total: -49.93 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -1.32 Total: -25.58 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.18 -6.63 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107713302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.672 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds