Wall clock time and date at job start Fri Apr 10 2020 18:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.51479 * 2 1 4 4 N 1.46508 * 109.47272 * 59.99520 * 3 2 1 5 5 C 1.34771 * 119.99765 * 180.02562 * 4 3 2 6 6 O 1.21729 * 120.00592 * 359.97438 * 5 4 3 7 7 C 1.46378 * 119.99682 * 179.97438 * 5 4 3 8 8 C 1.33980 * 119.23288 * 0.02562 * 7 5 4 9 9 O 1.34998 * 121.69033 * 180.36795 * 8 7 5 10 10 C 1.43246 * 116.76398 * 342.81676 * 9 8 7 11 11 C 1.53557 * 108.08655 * 45.48827 * 10 9 8 12 12 O 1.36220 * 119.23459 * 179.97438 * 7 5 4 13 13 C 1.53296 * 109.51780 * 239.89553 * 2 1 3 14 14 N 1.47156 * 108.38366 * 292.32922 * 13 2 1 15 15 C 1.36935 * 120.98090 * 129.43825 * 14 13 2 16 16 H 1.08004 * 119.99904 * 206.24101 * 15 14 13 17 17 C 1.38812 * 120.00105 * 26.23890 * 15 14 13 18 18 N 1.31621 * 119.99581 * 16.91517 * 17 15 14 19 19 Si 1.86804 * 120.00115 * 196.91014 * 17 15 14 20 20 H 1.48499 * 109.46810 * 60.00039 * 19 17 15 21 21 H 1.48501 * 109.46763 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47031 * 300.00436 * 19 17 15 23 23 C 1.47149 * 118.03492 * 309.46508 * 14 13 2 24 24 C 1.53292 * 108.38822 * 50.53214 * 23 14 13 25 25 O 1.42956 * 109.26462 * 307.72265 * 24 23 14 26 26 H 1.08994 * 109.46762 * 60.00152 * 1 2 3 27 27 H 1.08997 * 109.46720 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47412 * 300.00221 * 1 2 3 29 29 H 1.09008 * 109.47027 * 299.99793 * 3 2 1 30 30 H 1.08998 * 109.47424 * 179.97438 * 3 2 1 31 31 H 0.97001 * 119.99392 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.15561 * 0.36781 * 8 7 5 33 33 H 1.08998 * 109.74217 * 165.13379 * 10 9 8 34 34 H 1.08999 * 109.74098 * 285.79516 * 10 9 8 35 35 H 1.08996 * 109.75100 * 61.47590 * 11 10 9 36 36 H 1.09004 * 109.75199 * 182.21436 * 11 10 9 37 37 H 1.09000 * 109.67742 * 52.05032 * 13 2 1 38 38 H 1.09001 * 109.68476 * 172.56606 * 13 2 1 39 39 H 0.97010 * 119.99667 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.68364 * 170.25737 * 23 14 13 41 41 H 1.09005 * 109.68025 * 290.80879 * 23 14 13 42 42 H 1.09002 * 109.51008 * 67.62473 * 24 23 14 43 43 H 1.08996 * 109.51417 * 187.72551 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5532 2.1332 1.1962 5 6 1.8793 3.4234 1.4091 6 8 2.5797 4.0144 0.6079 7 6 1.3914 4.1140 2.6039 8 6 0.6220 3.4486 3.4759 9 8 0.1391 4.0388 4.5898 10 6 0.7715 5.2568 5.0004 11 6 0.9479 6.1441 3.7596 12 8 1.7310 5.4179 2.8039 13 6 2.0421 -0.7247 -1.2500 14 7 1.6971 -2.1505 -1.1338 15 6 1.0620 -2.8074 -2.1538 16 1 0.4494 -3.6711 -1.9411 17 6 1.2056 -2.3633 -3.4611 18 7 2.1871 -1.5440 -3.7736 19 14 0.0059 -2.9286 -4.7767 20 1 -1.3696 -2.5104 -4.4047 21 1 0.3748 -2.3169 -6.0786 22 1 0.0592 -4.4080 -4.8924 23 6 2.0542 -2.8494 0.1109 24 6 1.5416 -2.0211 1.2946 25 8 2.0075 -0.6758 1.1659 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6781 1.9562 -0.8901 30 1 3.1311 1.4413 0.0005 31 1 0.9954 1.6620 1.8348 32 1 0.3820 2.4135 3.2827 33 1 0.1461 5.7678 5.7324 34 1 1.7452 5.0368 5.4379 35 1 -0.0274 6.3807 3.3342 36 1 1.4634 7.0642 4.0350 37 1 1.5699 -0.3038 -2.1376 38 1 3.1240 -0.6129 -1.3218 39 1 2.2877 -1.2339 -4.6873 40 1 1.5901 -3.8355 0.1245 41 1 3.1375 -2.9520 0.1765 42 1 0.4516 -2.0293 1.2997 43 1 1.9133 -2.4483 2.2260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107713303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:01 Heat of formation + Delta-G solvation = -98.099033 kcal Electronic energy + Delta-G solvation = -27047.943127 eV Core-core repulsion = 23095.969119 eV Total energy + Delta-G solvation = -3951.974009 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.29301 -39.64459 -38.67281 -37.18603 -34.97577 -34.37111 -32.78764 -31.42863 -31.26067 -29.13387 -27.97370 -26.43727 -25.80884 -25.19054 -23.26160 -22.08147 -21.14003 -19.67388 -18.99571 -18.52044 -18.36180 -17.00867 -16.65450 -15.90261 -15.84466 -15.27186 -15.09406 -15.01702 -14.81638 -14.44978 -14.36674 -14.15556 -14.02139 -13.62312 -13.49600 -13.01785 -12.83316 -12.63906 -12.37608 -11.91436 -11.62044 -11.32163 -11.21678 -11.03181 -10.93422 -10.82978 -10.69988 -10.33835 -10.29188 -10.03032 -9.86166 -9.56930 -9.09516 -8.95007 -8.55385 -8.39926 -6.76445 -5.86268 -3.29761 1.17086 2.52079 2.86773 3.26882 3.33662 3.40330 3.40859 3.68046 3.97643 4.21466 4.42059 4.48691 4.57966 4.61424 4.92886 4.97993 5.10484 5.15359 5.31892 5.43723 5.46833 5.59701 5.66305 5.89057 5.91188 5.98527 6.06677 6.11217 6.27333 6.39443 6.46089 6.53696 6.63960 6.72731 6.80053 7.04264 7.05748 7.44383 7.58242 7.68743 7.84172 8.26143 8.31277 9.08864 9.71955 10.28984 11.21750 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.023986 B = 0.003193 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.050461 B = 8766.017679 C = 9230.775752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.077 3.923 3 C 0.142 3.858 4 N -0.709 5.709 5 C 0.570 3.430 6 O -0.525 6.525 7 C -0.063 4.063 8 C 0.001 3.999 9 O -0.301 6.301 10 C 0.013 3.987 11 C 0.018 3.982 12 O -0.285 6.285 13 C 0.160 3.840 14 N -0.590 5.590 15 C -0.256 4.256 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.904 3.096 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.283 1.283 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.385 6.385 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.400 0.600 32 H 0.180 0.820 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.031 0.969 39 H 0.257 0.743 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.048 0.952 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 10.666 17.307 20.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 C 0.019 3.981 4 N -0.363 5.363 5 C 0.356 3.644 6 O -0.403 6.403 7 C -0.112 4.112 8 C -0.065 4.065 9 O -0.213 6.213 10 C -0.062 4.062 11 C -0.058 4.058 12 O -0.199 6.199 13 C 0.033 3.967 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.733 3.267 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.209 1.209 23 C -0.017 4.017 24 C -0.032 4.032 25 O -0.304 6.304 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.236 0.764 32 H 0.196 0.804 33 H 0.139 0.861 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.139 0.861 37 H 0.115 0.885 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.067 0.933 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.365 11.267 16.685 20.601 hybrid contribution -0.996 -0.569 -0.476 1.242 sum -5.362 10.697 16.209 20.148 Atomic orbital electron populations 1.22219 0.95677 1.03340 1.00773 1.22578 0.93614 0.90489 0.89699 1.21440 1.00175 0.89810 0.86702 1.45808 1.53559 1.10590 1.26384 1.17096 0.81056 0.81854 0.84401 1.90858 1.37188 1.65942 1.46266 1.20495 1.06905 0.86214 0.97602 1.23155 0.99298 0.97860 0.86195 1.86100 1.56721 1.38102 1.40422 1.23723 1.00210 0.85073 0.97193 1.23674 0.97683 0.95366 0.89107 1.86448 1.54789 1.19396 1.59267 1.21289 0.97911 0.83932 0.93536 1.43986 1.68608 1.04906 1.13894 1.19111 1.21780 1.12253 0.85389 0.91449 1.25043 0.97259 1.00072 0.97096 1.70005 1.29129 1.36694 1.18663 0.86355 0.80980 0.78328 0.81021 1.20962 1.21528 1.20870 1.21594 0.97580 0.95221 0.87332 1.23045 0.98335 0.83056 0.98793 1.87811 1.73071 1.25835 1.43709 0.91723 0.90690 0.94049 0.89654 0.90424 0.76381 0.80386 0.86137 0.90039 0.90431 0.86076 0.88469 0.95142 0.93327 0.92029 0.95623 0.93346 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 7.92 37.16 0.29 -2.39 16 2 C 0.08 1.40 0.76 -90.47 -0.07 1.33 16 3 C 0.14 2.41 4.82 -4.04 -0.02 2.39 16 4 N -0.71 -10.28 5.08 -61.71 -0.31 -10.59 16 5 C 0.57 9.18 7.73 -12.99 -0.10 9.08 16 6 O -0.53 -10.63 16.92 -10.05 -0.17 -10.80 16 7 C -0.06 -0.85 6.61 -37.81 -0.25 -1.10 16 8 C 0.00 0.01 10.57 29.24 0.31 0.32 16 9 O -0.30 -2.93 10.47 -30.82 -0.32 -3.26 16 10 C 0.01 0.09 7.29 37.45 0.27 0.36 16 11 C 0.02 0.14 7.31 37.45 0.27 0.42 16 12 O -0.29 -3.83 10.28 -45.77 -0.47 -4.30 16 13 C 0.16 3.65 4.11 -3.53 -0.01 3.64 16 14 N -0.59 -14.11 2.57 -171.83 -0.44 -14.56 16 15 C -0.26 -6.71 9.65 -15.06 -0.15 -6.86 16 16 H 0.07 1.73 7.88 -52.48 -0.41 1.31 16 17 C 0.00 0.12 4.95 -17.43 -0.09 0.03 16 18 N -0.90 -25.41 11.14 55.49 0.62 -24.79 16 19 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 C 0.11 2.19 6.74 -3.54 -0.02 2.16 16 24 C 0.05 0.76 6.60 37.31 0.25 1.01 16 25 O -0.38 -6.84 9.98 -35.23 -0.35 -7.19 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 1.35 6.11 -51.93 -0.32 1.04 16 28 H 0.04 0.56 6.87 -51.93 -0.36 0.20 16 29 H 0.09 1.47 8.14 -51.92 -0.42 1.05 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.40 4.86 5.04 -40.82 -0.21 4.65 16 32 H 0.18 1.53 6.08 -52.49 -0.32 1.21 16 33 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.10 2.45 6.13 -51.93 -0.32 2.13 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.78 6.25 -51.93 -0.32 0.45 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 344.46 15.07 5.19 5.19 Total: -1.00 -33.12 344.46 -6.63 -39.75 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.03 Total: 4.11 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 0.69 Total: 10.39 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.14 Total: -49.93 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -1.31 Total: -25.55 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.12 -6.63 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107713303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.346 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds