Wall clock time and date at job start Fri Apr 10 2020 18:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.51479 * 2 1 4 4 N 1.46508 * 109.47272 * 59.99520 * 3 2 1 5 5 C 1.34771 * 119.99765 * 180.02562 * 4 3 2 6 6 O 1.21729 * 120.00592 * 359.97438 * 5 4 3 7 7 C 1.46378 * 119.99682 * 179.97438 * 5 4 3 8 8 C 1.33980 * 119.23288 * 0.02562 * 7 5 4 9 9 O 1.34998 * 121.69033 * 180.36795 * 8 7 5 10 10 C 1.43246 * 116.76398 * 342.81676 * 9 8 7 11 11 C 1.53557 * 108.08655 * 45.48827 * 10 9 8 12 12 O 1.36220 * 119.23459 * 179.97438 * 7 5 4 13 13 C 1.53296 * 109.51780 * 239.89553 * 2 1 3 14 14 N 1.47156 * 108.38366 * 292.32922 * 13 2 1 15 15 C 1.36935 * 120.98090 * 129.43825 * 14 13 2 16 16 H 1.08004 * 119.99904 * 206.24101 * 15 14 13 17 17 C 1.38812 * 120.00105 * 26.23890 * 15 14 13 18 18 N 1.31621 * 119.99581 * 16.91517 * 17 15 14 19 19 Si 1.86804 * 120.00115 * 196.91014 * 17 15 14 20 20 H 1.48499 * 109.46810 * 60.00039 * 19 17 15 21 21 H 1.48501 * 109.46763 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47031 * 300.00436 * 19 17 15 23 23 C 1.47149 * 118.03492 * 309.46508 * 14 13 2 24 24 C 1.53292 * 108.38822 * 50.53214 * 23 14 13 25 25 O 1.42956 * 109.26462 * 307.72265 * 24 23 14 26 26 H 1.08994 * 109.46762 * 60.00152 * 1 2 3 27 27 H 1.08997 * 109.46720 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47412 * 300.00221 * 1 2 3 29 29 H 1.09008 * 109.47027 * 299.99793 * 3 2 1 30 30 H 1.08998 * 109.47424 * 179.97438 * 3 2 1 31 31 H 0.97001 * 119.99392 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.15561 * 0.36781 * 8 7 5 33 33 H 1.08998 * 109.74217 * 165.13379 * 10 9 8 34 34 H 1.08999 * 109.74098 * 285.79516 * 10 9 8 35 35 H 1.08996 * 109.75100 * 61.47590 * 11 10 9 36 36 H 1.09004 * 109.75199 * 182.21436 * 11 10 9 37 37 H 1.09000 * 109.67742 * 52.05032 * 13 2 1 38 38 H 1.09001 * 109.68476 * 172.56606 * 13 2 1 39 39 H 0.97010 * 119.99667 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.68364 * 170.25737 * 23 14 13 41 41 H 1.09005 * 109.68025 * 290.80879 * 23 14 13 42 42 H 1.09002 * 109.51008 * 67.62473 * 24 23 14 43 43 H 1.08996 * 109.51417 * 187.72551 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5532 2.1332 1.1962 5 6 1.8793 3.4234 1.4091 6 8 2.5797 4.0144 0.6079 7 6 1.3914 4.1140 2.6039 8 6 0.6220 3.4486 3.4759 9 8 0.1391 4.0388 4.5898 10 6 0.7715 5.2568 5.0004 11 6 0.9479 6.1441 3.7596 12 8 1.7310 5.4179 2.8039 13 6 2.0421 -0.7247 -1.2500 14 7 1.6971 -2.1505 -1.1338 15 6 1.0620 -2.8074 -2.1538 16 1 0.4494 -3.6711 -1.9411 17 6 1.2056 -2.3633 -3.4611 18 7 2.1871 -1.5440 -3.7736 19 14 0.0059 -2.9286 -4.7767 20 1 -1.3696 -2.5104 -4.4047 21 1 0.3748 -2.3169 -6.0786 22 1 0.0592 -4.4080 -4.8924 23 6 2.0542 -2.8494 0.1109 24 6 1.5416 -2.0211 1.2946 25 8 2.0075 -0.6758 1.1659 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6781 1.9562 -0.8901 30 1 3.1311 1.4413 0.0005 31 1 0.9954 1.6620 1.8348 32 1 0.3820 2.4135 3.2827 33 1 0.1461 5.7678 5.7324 34 1 1.7452 5.0368 5.4379 35 1 -0.0274 6.3807 3.3342 36 1 1.4634 7.0642 4.0350 37 1 1.5699 -0.3038 -2.1376 38 1 3.1240 -0.6129 -1.3218 39 1 2.2877 -1.2339 -4.6873 40 1 1.5901 -3.8355 0.1245 41 1 3.1375 -2.9520 0.1765 42 1 0.4516 -2.0293 1.2997 43 1 1.9133 -2.4483 2.2260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107713303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:00 Heat of formation + Delta-G solvation = -122.350919 kcal Electronic energy + Delta-G solvation = -27048.994768 eV Core-core repulsion = 23095.969119 eV Total energy + Delta-G solvation = -3953.025649 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14037 -40.99296 -40.03600 -38.01809 -36.54809 -35.97429 -33.92459 -33.19999 -32.47203 -30.00272 -29.53407 -28.00711 -27.15062 -26.20182 -24.97254 -23.31942 -22.56949 -20.71511 -20.28048 -19.54988 -19.33125 -18.82942 -17.54510 -17.32392 -17.04609 -16.75683 -16.35832 -16.10576 -16.00322 -15.75101 -15.57243 -15.32648 -15.22192 -15.13056 -14.85211 -14.61208 -14.17249 -13.99033 -13.45112 -13.17963 -13.13621 -12.90618 -12.74018 -12.51340 -12.42916 -12.17363 -12.00217 -11.94450 -11.82709 -11.69319 -11.16800 -11.01841 -10.74128 -10.48146 -10.28587 -9.27436 -8.70379 -7.88212 -5.34870 0.21619 1.47339 1.49648 1.54580 1.56629 2.05307 2.22341 2.48782 2.69416 2.82314 3.26435 3.40315 3.50475 3.69158 3.91710 3.94859 3.99784 4.02379 4.11882 4.26741 4.43097 4.44573 4.49238 4.57253 4.63990 4.64730 4.73490 4.79883 4.83570 4.98019 5.05895 5.13275 5.22145 5.24856 5.38450 5.55546 5.63127 5.75422 6.17953 6.30589 6.37919 6.51586 7.07820 7.08905 7.78032 8.31795 9.17296 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.023986 B = 0.003193 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.050461 B = 8766.017679 C = 9230.775752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.094 3.906 3 C 0.150 3.850 4 N -0.693 5.693 5 C 0.569 3.431 6 O -0.580 6.580 7 C -0.098 4.098 8 C 0.043 3.957 9 O -0.304 6.304 10 C 0.011 3.989 11 C 0.010 3.990 12 O -0.322 6.322 13 C 0.167 3.833 14 N -0.607 5.607 15 C -0.260 4.260 16 H 0.074 0.926 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.274 1.274 21 H -0.298 1.298 22 H -0.276 1.276 23 C 0.101 3.899 24 C 0.052 3.948 25 O -0.385 6.385 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.414 0.586 32 H 0.201 0.799 33 H 0.159 0.841 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.147 0.853 37 H 0.067 0.933 38 H -0.007 1.007 39 H 0.250 0.750 40 H 0.072 0.928 41 H 0.011 0.989 42 H 0.063 0.937 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.360 10.559 20.460 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 C 0.026 3.974 4 N -0.348 5.348 5 C 0.358 3.642 6 O -0.461 6.461 7 C -0.147 4.147 8 C -0.025 4.025 9 O -0.215 6.215 10 C -0.064 4.064 11 C -0.065 4.065 12 O -0.237 6.237 13 C 0.040 3.960 14 N -0.331 5.331 15 C -0.389 4.389 16 H 0.092 0.908 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.794 3.206 20 H -0.200 1.200 21 H -0.225 1.225 22 H -0.202 1.202 23 C -0.024 4.024 24 C -0.025 4.025 25 O -0.304 6.304 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.253 0.747 32 H 0.218 0.782 33 H 0.176 0.824 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.165 0.835 37 H 0.086 0.914 38 H 0.011 0.989 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.029 0.971 42 H 0.082 0.918 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.723 11.132 19.917 23.787 hybrid contribution -0.263 -0.552 -1.313 1.449 sum -6.986 10.579 18.604 22.513 Atomic orbital electron populations 1.22139 0.93719 1.03078 1.02319 1.22183 0.94800 0.90157 0.87548 1.21120 0.99046 0.89545 0.87677 1.45534 1.53330 1.10286 1.25669 1.17573 0.80053 0.81794 0.84778 1.90822 1.39820 1.67117 1.48352 1.20057 1.09837 0.86993 0.97769 1.23452 0.95751 0.98153 0.85117 1.86111 1.56736 1.39199 1.39495 1.24064 1.01317 0.83789 0.97209 1.24033 0.97830 0.96029 0.88583 1.86375 1.56453 1.19626 1.61209 1.21049 0.95458 0.84405 0.95053 1.44243 1.68616 1.05494 1.14741 1.19473 1.21291 1.12083 0.86081 0.90803 1.25792 0.98782 1.00767 0.99184 1.70181 1.31044 1.38486 1.18510 0.85357 0.79190 0.77950 0.78059 1.20004 1.22481 1.20172 1.21827 0.97009 0.96400 0.87184 1.23128 0.99265 0.81643 0.98473 1.87824 1.73416 1.26486 1.42691 0.92521 0.91755 0.90179 0.90517 0.92357 0.74669 0.78218 0.82385 0.89502 0.90011 0.83538 0.91421 0.98932 0.94090 0.90947 0.97066 0.91847 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.83 7.92 71.98 0.57 -4.26 16 2 C 0.09 3.38 0.76 -10.70 -0.01 3.37 16 3 C 0.15 5.22 4.82 86.38 0.42 5.63 16 4 N -0.69 -19.46 5.08 -467.35 -2.38 -21.83 16 5 C 0.57 18.38 7.73 86.36 0.67 19.05 16 6 O -0.58 -24.51 16.92 10.11 0.17 -24.34 16 7 C -0.10 -2.51 6.61 23.42 0.15 -2.36 16 8 C 0.04 0.77 10.57 66.85 0.71 1.48 16 9 O -0.30 -4.74 10.47 -69.20 -0.72 -5.47 16 10 C 0.01 0.11 7.29 72.17 0.53 0.63 16 11 C 0.01 0.14 7.31 72.17 0.53 0.67 16 12 O -0.32 -8.42 10.28 -71.84 -0.74 -9.16 16 13 C 0.17 7.94 4.11 86.35 0.36 8.29 16 14 N -0.61 -29.33 2.57 -697.54 -1.79 -31.12 16 15 C -0.26 -13.68 9.65 84.03 0.81 -12.87 16 16 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 17 C -0.05 -2.72 4.95 84.86 0.42 -2.30 16 18 N -0.94 -55.00 11.14 21.65 0.24 -54.76 16 19 Si 0.97 43.88 29.59 68.60 2.03 45.90 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 C 0.10 3.96 6.74 86.35 0.58 4.55 16 24 C 0.05 1.58 6.60 72.08 0.48 2.05 16 25 O -0.38 -12.92 9.98 -148.98 -1.49 -14.41 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 2.17 6.11 -2.39 -0.01 2.16 16 28 H 0.08 1.86 6.87 -2.39 -0.02 1.84 16 29 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 30 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.41 8.88 5.04 -92.71 -0.47 8.41 16 32 H 0.20 2.57 6.08 -2.91 -0.02 2.55 16 33 H 0.16 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 3.60 6.13 -2.39 -0.01 3.59 16 38 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 40 H 0.07 2.64 7.96 -2.39 -0.02 2.62 16 41 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 42 H 0.06 1.78 6.25 -2.39 -0.01 1.77 16 43 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -75.94 344.46 2.10 -73.84 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.57 Total: 17.40 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: 6.20 Total: 23.95 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -3.93 Total: -107.72 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -2.78 Total: -53.37 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -75.94 2.10 -73.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107713303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.511 kcal (2) G-P(sol) polarization free energy of solvation -75.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds